Free for academic non-profit institutions. Other users need a Commercial license

Aliases for BAZ2B Gene

Aliases for BAZ2B Gene

  • Bromodomain Adjacent To Zinc Finger Domain 2B 2 3 5
  • Bromodomain Adjacent To Zinc Finger Domain Protein 2B 3
  • KIAA1476 4
  • HWALp4 4
  • WALp4 3

External Ids for BAZ2B Gene

Previous GeneCards Identifiers for BAZ2B Gene

  • GC02M158107
  • GC02M158704
  • GC02M160139
  • GC02M160378
  • GC02M160000
  • GC02M159883
  • GC02M152059

Summaries for BAZ2B Gene

Entrez Gene Summary for BAZ2B Gene

  • This gene belongs to the bromodomain gene family. Members of this gene family encode proteins that are integral components of chromatin remodeling complexes. The encoded protein showed strong preference for the activating H3K14Ac mark in a histone peptide screen, suggesting a potential role in transcriptional activation. This gene may be associated with susceptibility to sudden cardiac death (SCD). [provided by RefSeq, Aug 2016]

GeneCards Summary for BAZ2B Gene

BAZ2B (Bromodomain Adjacent To Zinc Finger Domain 2B) is a Protein Coding gene. GO annotations related to this gene include binding. An important paralog of this gene is BAZ2A.

UniProtKB/Swiss-Prot for BAZ2B Gene

  • May play a role in transcriptional regulation interacting with ISWI.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BAZ2B Gene

Genomics for BAZ2B Gene

Regulatory Elements for BAZ2B Gene

Enhancers for BAZ2B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around BAZ2B on UCSC Golden Path with GeneCards custom track

Genomic Location for BAZ2B Gene

Chromosome:
2
Start:
159,315,312 bp from pter
End:
159,712,439 bp from pter
Size:
397,128 bases
Orientation:
Minus strand

Genomic View for BAZ2B Gene

Genes around BAZ2B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BAZ2B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BAZ2B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BAZ2B Gene

Proteins for BAZ2B Gene

  • Protein details for BAZ2B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UIF8-BAZ2B_HUMAN
    Recommended name:
    Bromodomain adjacent to zinc finger domain protein 2B
    Protein Accession:
    Q9UIF8
    Secondary Accessions:
    • D3DPA8
    • Q96EA1
    • Q96SQ8
    • Q9P252
    • Q9Y4N8

    Protein attributes for BAZ2B Gene

    Size:
    2168 amino acids
    Molecular mass:
    240459 Da
    Quaternary structure:
    • Interacts with acetylated lysine residues on histone H1.4, H2A, H2B, H3 and H4 (in vitro).
    SequenceCaution:
    • Sequence=AAH12576.1; Type=Frameshift; Positions=927; Evidence={ECO:0000305}; Sequence=AAH12576.1; Type=Miscellaneous discrepancy; Note=contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=BAA96000.2; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB55231.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for BAZ2B Gene

    Alternative splice isoforms for BAZ2B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BAZ2B Gene

Post-translational modifications for BAZ2B Gene

  • Ubiquitination at Lys 1538
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for BAZ2B Gene

Domains & Families for BAZ2B Gene

Suggested Antigen Peptide Sequences for BAZ2B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9UIF8

UniProtKB/Swiss-Prot:

BAZ2B_HUMAN :
  • Contains 1 bromo domain.
  • Belongs to the WAL family.
  • Contains 1 PHD-type zinc finger.
Domain:
  • Contains 1 bromo domain.
  • Contains 1 DDT domain.
  • Contains 1 MBD (methyl-CpG-binding) domain.
Family:
  • Belongs to the WAL family.
Similarity:
  • Contains 1 PHD-type zinc finger.
genes like me logo Genes that share domains with BAZ2B: view

Function for BAZ2B Gene

Molecular function for BAZ2B Gene

UniProtKB/Swiss-Prot Function:
May play a role in transcriptional regulation interacting with ISWI.

Gene Ontology (GO) - Molecular Function for BAZ2B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0005515 protein binding IPI 10662543
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with BAZ2B: view
genes like me logo Genes that share phenotypes with BAZ2B: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for BAZ2B Gene

Localization for BAZ2B Gene

Subcellular locations from UniProtKB/Swiss-Prot for BAZ2B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BAZ2B Gene COMPARTMENTS Subcellular localization image for BAZ2B gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for BAZ2B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with BAZ2B: view

Pathways & Interactions for BAZ2B Gene

SuperPathways for BAZ2B Gene

No Data Available

Gene Ontology (GO) - Biological Process for BAZ2B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated NAS 10662543
GO:0006355 regulation of transcription, DNA-templated NAS 10662543
genes like me logo Genes that share ontologies with BAZ2B: view

No data available for Pathways by source and SIGNOR curated interactions for BAZ2B Gene

Drugs & Compounds for BAZ2B Gene

(1) Drugs for BAZ2B Gene - From: ApexBio

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
GSK2801 Pharma inhibitor of BAZ2A and BAZ2B bromodomains 0

(1) ApexBio Compounds for BAZ2B Gene

Compound Action Cas Number
GSK2801 inhibitor of BAZ2A and BAZ2B bromodomains 1619994-68-1
genes like me logo Genes that share compounds with BAZ2B: view

Transcripts for BAZ2B Gene

Unigene Clusters for BAZ2B Gene

Bromodomain adjacent to zinc finger domain, 2B:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BAZ2B Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26a ·
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:

ExUns: 26b ^ 27a · 27b ^ 28a · 28b ^ 29a · 29b ^ 30 ^ 31 ^ 32 ^ 33
SP1:
SP2: -
SP3:
SP4:
SP5:
SP6:

Relevant External Links for BAZ2B Gene

GeneLoc Exon Structure for
BAZ2B
ECgene alternative splicing isoforms for
BAZ2B

Expression for BAZ2B Gene

mRNA expression in normal human tissues for BAZ2B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for BAZ2B Gene

This gene is overexpressed in Adipocyte (28.0), Frontal cortex (12.6), and Plasma (11.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for BAZ2B Gene



Protein tissue co-expression partners for BAZ2B Gene

NURSA nuclear receptor signaling pathways regulating expression of BAZ2B Gene:

BAZ2B

SOURCE GeneReport for Unigene cluster for BAZ2B Gene:

Hs.470369

mRNA Expression by UniProt/SwissProt for BAZ2B Gene:

Q9UIF8-BAZ2B_HUMAN
Tissue specificity: Expressed at varying levels in several tissues, whereas a smaller transcript was expressed specifically in testis.
genes like me logo Genes that share expression patterns with BAZ2B: view

Primer Products

No data available for mRNA differential expression in normal tissues for BAZ2B Gene

Orthologs for BAZ2B Gene

This gene was present in the common ancestor of animals.

Orthologs for BAZ2B Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia BAZ2B 34
  • 93.86 (n)
  • 94.04 (a)
BAZ2B 35
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia BAZ2B 34
  • 94.86 (n)
  • 96.08 (a)
BAZ2B 35
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Baz2b 34
  • 84.49 (n)
  • 85.38 (a)
Baz2b 16
Baz2b 35
  • 86 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia BAZ2B 34
  • 99.34 (n)
  • 99.45 (a)
BAZ2B 35
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Baz2b 34
  • 85 (n)
  • 85.75 (a)
oppossum
(Monodelphis domestica)
Mammalia BAZ2B 35
  • 88 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia BAZ2B 35
  • 88 (a)
OneToOne
chicken
(Gallus gallus)
Aves BAZ2B 34
  • 78.71 (n)
  • 78.65 (a)
BAZ2B 35
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia BAZ2B 35
  • 81 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia baz2b 34
  • 71.49 (n)
  • 70.88 (a)
Str.12647 34
zebrafish
(Danio rerio)
Actinopterygii baz2ba 34
  • 59.26 (n)
  • 59.18 (a)
Dr.28164 34
BAZ2B (1 of 3) 35
  • 38 (a)
OneToMany
baz2ba 35
  • 48 (a)
OneToMany
CABZ01028287.1 35
  • 52 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta tou 36
  • 61 (a)
tou 35
  • 18 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea flt-1 35
  • 24 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 37 (a)
OneToMany
Species where no ortholog for BAZ2B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for BAZ2B Gene

ENSEMBL:
Gene Tree for BAZ2B (if available)
TreeFam:
Gene Tree for BAZ2B (if available)

Paralogs for BAZ2B Gene

Paralogs for BAZ2B Gene

genes like me logo Genes that share paralogs with BAZ2B: view

Variants for BAZ2B Gene

Sequence variations from dbSNP and Humsavar for BAZ2B Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10202670 - 159,453,735(+) TGACC(A/G)TTGGG intron-variant, reference, missense
rs3213790 - 159,438,331(-) TAGTT(C/T)ATTGA reference, missense
rs3732287 - 159,433,068(+) AAAAA(A/G)GGGTG reference, missense
rs2302924 - 159,430,952(-) CCCAG(A/G/T)CTCTG intron-variant, reference, missense
rs415793 - 159,325,791(-) AAGTA(A/G)TTCAC reference, missense, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for BAZ2B Gene

Variant ID Type Subtype PubMed ID
esv1568454 CNV deletion 17803354
esv2445750 CNV deletion 19546169
esv2530003 CNV deletion 19546169
esv2674258 CNV deletion 23128226
esv3325646 CNV insertion 20981092
esv3388272 CNV insertion 20981092
esv3560433 CNV deletion 23714750
esv3593112 CNV loss 21293372
esv3593114 CNV loss 21293372
esv3593117 CNV loss 21293372
esv3593119 CNV loss 21293372
esv3593120 CNV loss 21293372
nsv1003926 CNV loss 25217958
nsv1008665 CNV gain 25217958
nsv1010774 CNV gain 25217958
nsv2994 CNV deletion 18451855
nsv2995 CNV insertion 18451855
nsv459918 CNV loss 19166990
nsv470497 CNV loss 18288195
nsv473025 CNV novel sequence insertion 20440878
nsv475333 CNV novel sequence insertion 20440878
nsv507042 OTHER sequence alteration 20534489
nsv583496 CNV loss 21841781
nsv955272 CNV duplication 24416366
nsv955273 CNV duplication 24416366
nsv961903 CNV duplication 23825009
nsv979139 CNV duplication 23825009

Variation tolerance for BAZ2B Gene

Residual Variation Intolerance Score: 5.18% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 13.23; 95.25% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BAZ2B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BAZ2B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BAZ2B Gene

Disorders for BAZ2B Gene

Relevant External Links for BAZ2B

Genetic Association Database (GAD)
BAZ2B
Human Genome Epidemiology (HuGE) Navigator
BAZ2B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BAZ2B

No disorders were found for BAZ2B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BAZ2B Gene

Publications for BAZ2B Gene

  1. A novel family of bromodomain genes. (PMID: 10662543) Jones M.H. … Shimane M. (Genomics 2000) 2 3 4 65
  2. Identification of a sudden cardiac death susceptibility locus at 2q24.2 through genome-wide association in European ancestry individuals. (PMID: 21738491) Arking D.E. … Chugh S.S. (PLoS Genet. 2011) 3 46 65
  3. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3 4 65
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 65
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 65

Products for BAZ2B Gene

Sources for BAZ2B Gene

Content
Loading form....