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Aliases for BASP1P1 Gene

Subcategory (RNA class) for BASP1P1 Gene

lncRNA

Aliases for BASP1P1 Gene

  • Brain Abundant, Membrane Attached Signal Protein 1 Pseudogene 1 2 3 5

External Ids for BASP1P1 Gene

ORGUL Members for BASP1P1 Gene

Previous GeneCards Identifiers for BASP1P1 Gene

  • GC13M023473

Summaries for BASP1P1 Gene

GeneCards Summary for BASP1P1 Gene

BASP1P1 (Brain Abundant, Membrane Attached Signal Protein 1 Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BASP1P1 Gene

Genomics for BASP1P1 Gene

Regulatory Elements for BASP1P1 Gene

Enhancers for BASP1P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F022883 0.8 Ensembl ENCODE 6 +14.1 14091 0.7 HDGF MTA2 POLR2A MLLT1 ZBTB40 SPI1 BASP1P1 GC13P022850
GH13F022884 0.5 FANTOM5 0.4 +13.6 13578 0.2 MLLT1 ZBTB40 BASP1P1 GC13P022850
GH13F022880 0.6 Ensembl ENCODE 0.3 +16.9 16903 1.7 YY1 BASP1P1 GC13P022850
GH13F022858 0.2 Ensembl 0.3 +39.8 39781 0.4 GC13P022850 BASP1P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BASP1P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BASP1P1 Gene

Chromosome:
13
Start:
22,897,030 bp from pter
End:
22,898,181 bp from pter
Size:
1,152 bases
Orientation:
Minus strand

Genomic View for BASP1P1 Gene

Genes around BASP1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BASP1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BASP1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BASP1P1 Gene

Proteins for BASP1P1 Gene

Post-translational modifications for BASP1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BASP1P1 Gene

Domains & Families for BASP1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BASP1P1 Gene

Function for BASP1P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BASP1P1 Gene

Localization for BASP1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BASP1P1 Gene

Pathways & Interactions for BASP1P1 Gene

SuperPathways for BASP1P1 Gene

No Data Available

Interacting Proteins for BASP1P1 Gene

Gene Ontology (GO) - Biological Process for BASP1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BASP1P1 Gene

Transcripts for BASP1P1 Gene

mRNA/cDNA for BASP1P1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BASP1P1 Gene

Brain abundant, membrane attached signal protein 1 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BASP1P1 Gene

No ASD Table

Relevant External Links for BASP1P1 Gene

GeneLoc Exon Structure for
BASP1P1
ECgene alternative splicing isoforms for
BASP1P1

Expression for BASP1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BASP1P1 Gene

mRNA differential expression in normal tissues according to GTEx for BASP1P1 Gene

This gene is overexpressed in Cervix - Endocervix (x46.6).

NURSA nuclear receptor signaling pathways regulating expression of BASP1P1 Gene:

BASP1P1

SOURCE GeneReport for Unigene cluster for BASP1P1 Gene:

Hs.729338
genes like me logo Genes that share expression patterns with BASP1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for BASP1P1 Gene

Orthologs for BASP1P1 Gene

Evolution for BASP1P1 Gene

ENSEMBL:
Gene Tree for BASP1P1 (if available)
TreeFam:
Gene Tree for BASP1P1 (if available)

No data available for Orthologs for BASP1P1 Gene

Paralogs for BASP1P1 Gene

No data available for Paralogs for BASP1P1 Gene

Variants for BASP1P1 Gene

Sequence variations from dbSNP and Humsavar for BASP1P1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs111402919 -- 22,896,681(+) AAAAA(-/G)GGGGC intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs111664996 -- 22,899,340(+) TCTAA(A/G)TAGAC intron-variant, upstream-variant-2KB
rs112639841 -- 22,899,579(+) GGCCG(C/T)GGCCC intron-variant, upstream-variant-2KB
rs112647465 -- 22,899,250(+) GTTCA(C/T)TTAAT intron-variant, upstream-variant-2KB
rs112689650 -- 22,899,883(+) GGACC(C/T)AAAGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BASP1P1 Gene

Variant ID Type Subtype PubMed ID
nsv832564 CNV loss 17160897
nsv832563 CNV gain 17160897
nsv561279 CNV gain 21841781
nsv561262 CNV gain 21841781
nsv526435 CNV gain 19592680
nsv518408 CNV loss 19592680
nsv517940 CNV gain 19592680
nsv1151909 OTHER inversion 26484159
nsv1140246 OTHER inversion 24896259
nsv1078303 OTHER inversion 25765185
nsv1046767 CNV gain 25217958
esv3892311 CNV gain 25118596
esv3631500 CNV loss 21293372
esv2761277 CNV gain+loss 21179565
esv2422502 CNV duplication 17116639
esv2422445 CNV duplication 17116639
esv2422437 CNV duplication 17116639
dgv74e55 CNV gain 17911159
dgv3083n54 CNV loss 21841781
dgv3082n54 CNV gain 21841781
dgv1614n100 CNV gain 25217958

Relevant External Links for BASP1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BASP1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BASP1P1 Gene

Disorders for BASP1P1 Gene

Relevant External Links for BASP1P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BASP1P1

No disorders were found for BASP1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BASP1P1 Gene

Publications for BASP1P1 Gene

  1. Mutational screening of BASP1 and transcribed processed pseudogene TPPsig-BASP1 in patients with MAPbius syndrome. (PMID: 19376485) Uzumcu A. … Basaran S. (J Genet Genomics 2009) 3 64

Products for BASP1P1 Gene

Sources for BASP1P1 Gene

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