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Aliases for BARX1-AS1 Gene

Subcategory (RNA class) for BARX1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BARX1-AS1 Gene

  • BARX1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for BARX1-AS1 Gene

Summaries for BARX1-AS1 Gene

GeneCards Summary for BARX1-AS1 Gene

BARX1-AS1 (BARX1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BARX1-AS1 Gene

Genomics for BARX1-AS1 Gene

Regulatory Elements for BARX1-AS1 Gene

Enhancers for BARX1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G093949 1.3 Ensembl ENCODE dbSUPER 6.2 -4.2 -4156 4.5 ESRRA SUZ12 JUN MAX RBBP5 ZBTB40 FOSL1 ELK1 EGR1 FOS PTPDC1 BARX1-AS1 BARX1 ENSG00000231990
GH09G093954 1.1 ENCODE dbSUPER 6.2 +0.2 182 1.6 KLF1 ZNF777 ZBTB21 SUZ12 KLF17 ZEB1 HIC1 ZFHX2 GLIS2 ZBTB20 BARX1-AS1 PTPDC1 PIR58475
GH09G093985 0.4 FANTOM5 12.5 +29.9 29937 0.3 TRIM28 BARX1-AS1 BARX1 PTPDC1 PIR58475
GH09G093959 0.8 ENCODE dbSUPER 6.1 +3.8 3797 0.2 CBX8 RNF2 SUZ12 CBX2 MAX MYC EZH2 BARX1-AS1 PTPDC1 PIR58475
GH09G094110 0.9 ENCODE 5.4 +155.5 155454 1.0 HDAC1 PKNOX1 ATF1 TBL1XR1 ARNT ZBTB40 TCF12 GATA2 CEBPB NCOA1 MIRLET7A1 MIRLET7F1 MIRLET7D BARX1-AS1 LOC105376152 CYCSP24
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BARX1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BARX1-AS1 Gene

Chromosome:
9
Start:
93,955,597 bp from pter
End:
93,959,140 bp from pter
Size:
3,544 bases
Orientation:
Plus strand

Genomic View for BARX1-AS1 Gene

Genes around BARX1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BARX1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BARX1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for BARX1-AS1 Gene

Proteins for BARX1-AS1 Gene

Post-translational modifications for BARX1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BARX1-AS1 Gene

Domains & Families for BARX1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BARX1-AS1 Gene

Function for BARX1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BARX1-AS1 Gene

Localization for BARX1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BARX1-AS1 Gene

Pathways & Interactions for BARX1-AS1 Gene

SuperPathways for BARX1-AS1 Gene

No Data Available

Interacting Proteins for BARX1-AS1 Gene

Gene Ontology (GO) - Biological Process for BARX1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BARX1-AS1 Gene

Drugs & Compounds for BARX1-AS1 Gene

No Compound Related Data Available

Transcripts for BARX1-AS1 Gene

mRNA/cDNA for BARX1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BARX1-AS1 Gene

No ASD Table

Relevant External Links for BARX1-AS1 Gene

GeneLoc Exon Structure for
BARX1-AS1
ECgene alternative splicing isoforms for
BARX1-AS1

Expression for BARX1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BARX1-AS1 Gene

genes like me logo Genes that share expression patterns with BARX1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BARX1-AS1 Gene

Orthologs for BARX1-AS1 Gene

Evolution for BARX1-AS1 Gene

ENSEMBL:
Gene Tree for BARX1-AS1 (if available)
TreeFam:
Gene Tree for BARX1-AS1 (if available)

No data available for Orthologs for BARX1-AS1 Gene

Paralogs for BARX1-AS1 Gene

No data available for Paralogs for BARX1-AS1 Gene

Variants for BARX1-AS1 Gene

Sequence variations from dbSNP and Humsavar for BARX1-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000515212 -- 93,958,275(+) CCTGA(C/T)CCCCC intron-variant
rs1000994459 -- 93,956,936(+) CTCCA(C/G)CTGCT upstream-variant-2KB
rs1001778056 -- 93,956,073(+) TTTCT(C/T)TCCGG nc-transcript-variant, upstream-variant-2KB
rs1002024232 -- 93,954,461(+) GGGCC(A/C)GCGTC intron-variant, upstream-variant-2KB
rs1002053091 -- 93,954,167(+) CAGAC(A/G/T)GTTGG intron-variant, upstream-variant-2KB

Relevant External Links for BARX1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BARX1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BARX1-AS1 Gene

Disorders for BARX1-AS1 Gene

Relevant External Links for BARX1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BARX1-AS1

No disorders were found for BARX1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BARX1-AS1 Gene

Publications for BARX1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for BARX1-AS1 Gene

Sources for BARX1-AS1 Gene

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