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Aliases for BARX1 Gene

Aliases for BARX1 Gene

  • BARX Homeobox 1 2 3
  • BarH-Like Homeobox 1 2

External Ids for BARX1 Gene

Previous GeneCards Identifiers for BARX1 Gene

  • GC09M087540
  • GC09M088441
  • GC09M090013
  • GC09M092055
  • GC09M093793
  • GC09M095753
  • GC09M096713
  • GC09M066390

Summaries for BARX1 Gene

Entrez Gene Summary for BARX1 Gene

  • This gene encodes a member of the Bar subclass of homeobox transcription factors. Studies of the mouse and chick homolog suggest the encoded protein may play a role in developing teeth and craniofacial mesenchyme of neural crest origin. The protein may also be associated with differentiation of stomach epithelia. [provided by RefSeq, Jul 2008]

GeneCards Summary for BARX1 Gene

BARX1 (BARX Homeobox 1) is a Protein Coding gene. Diseases associated with BARX1 include hard palate cancer. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and transcription regulatory region sequence-specific DNA binding. An important paralog of this gene is DLX5.

UniProtKB/Swiss-Prot for BARX1 Gene

  • Transcription factor, which is involved in craniofacial development, in odontogenesis and in stomach organogenesis. May have a role in the differentiation of molars from incisors. Plays a role in suppressing endodermal Wnt activity (By similarity). Binds to a regulatory module of the NCAM promoter.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BARX1 Gene

Genomics for BARX1 Gene

Regulatory Elements for BARX1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for BARX1 Gene

Start:
93,951,622 bp from pter
End:
93,955,372 bp from pter
Size:
3,751 bases
Orientation:
Minus strand

Genomic View for BARX1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BARX1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BARX1 Gene

Proteins for BARX1 Gene

  • Protein details for BARX1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9HBU1-BARX1_HUMAN
    Recommended name:
    Homeobox protein BarH-like 1
    Protein Accession:
    Q9HBU1
    Secondary Accessions:
    • Q6P2R4
    • Q96GH8

    Protein attributes for BARX1 Gene

    Size:
    254 amino acids
    Molecular mass:
    27298 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAG23738.1; Type=Frameshift; Positions=Several; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for BARX1 Gene

    Alternative splice isoforms for BARX1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BARX1 Gene

Proteomics data for BARX1 Gene at MOPED

Post-translational modifications for BARX1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for BARX1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for BARX1 Gene

Domains for BARX1 Gene

Gene Families for BARX1 Gene

HGNC:
  • NKL :Homeoboxes / ANTP class : NKL subclass

Suggested Antigen Peptide Sequences for BARX1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9HBU1

UniProtKB/Swiss-Prot:

BARX1_HUMAN :
  • Q9HBU1
Domain:
  • Contains 1 homeobox DNA-binding domain.
Family:
  • Belongs to the BAR homeobox family.
genes like me logo Genes that share domains with BARX1: view

Function for BARX1 Gene

Molecular function for BARX1 Gene

UniProtKB/Swiss-Prot Function: Transcription factor, which is involved in craniofacial development, in odontogenesis and in stomach organogenesis. May have a role in the differentiation of molars from incisors. Plays a role in suppressing endodermal Wnt activity (By similarity). Binds to a regulatory module of the NCAM promoter.

Gene Ontology (GO) - Molecular Function for BARX1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding --
GO:0003700 sequence-specific DNA binding transcription factor activity NAS 10995576
GO:0043565 sequence-specific DNA binding IEA --
genes like me logo Genes that share ontologies with BARX1: view
genes like me logo Genes that share phenotypes with BARX1: view

Animal Models for BARX1 Gene

MGI Knock Outs for BARX1:

Animal Model Products

CRISPR Products

miRNA for BARX1 Gene

miRTarBase miRNAs that target BARX1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for BARX1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for BARX1 Gene

Localization for BARX1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BARX1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BARX1 Gene COMPARTMENTS Subcellular localization image for BARX1 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for BARX1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with BARX1: view

Pathways for BARX1 Gene

SuperPathways for BARX1 Gene

No Data Available

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for BARX1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0007267 cell-cell signaling IEA --
GO:0009888 tissue development --
GO:0009952 anterior/posterior pattern specification IEA --
genes like me logo Genes that share ontologies with BARX1: view

No data available for Pathways by source for BARX1 Gene

Transcripts for BARX1 Gene

mRNA/cDNA for BARX1 Gene

(34) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BARX1 Gene

BARX homeobox 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for BARX1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BARX1 Gene

No ASD Table

Relevant External Links for BARX1 Gene

GeneLoc Exon Structure for
BARX1
ECgene alternative splicing isoforms for
BARX1

Expression for BARX1 Gene

mRNA expression in normal human tissues for BARX1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for BARX1 Gene

This gene is overexpressed in Stomach (27.6) and Esophagus - Gastroesophageal Junction (18.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for BARX1 Gene

SOURCE GeneReport for Unigene cluster for BARX1 Gene Hs.164960

mRNA Expression by UniProt/SwissProt for BARX1 Gene

Q9HBU1-BARX1_HUMAN
Tissue specificity: Widely expressed. Expressed at higher levels in testis and heart. Detected in craniofacial tissue and adult iris, but not in lymphocytes, fibroblasts, choroid retina, retinal pigment epithelium, kidney, or fetal liver
genes like me logo Genes that share expressions with BARX1: view

In Situ Assay Products

Orthologs for BARX1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for BARX1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BARX1 35
  • 99.44 (n)
  • 100 (a)
BARX1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia BARX1 35
  • 90.16 (n)
  • 95.67 (a)
BARX1 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia BARX1 35
  • 89.76 (n)
  • 94.49 (a)
BARX1 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Barx1 35
  • 88.06 (n)
  • 95.67 (a)
Barx1 16
Barx1 36
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia BARX1 36
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia BARX1 36
  • 82 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Barx1 35
  • 88.58 (n)
  • 96.06 (a)
chicken
(Gallus gallus)
Aves BARX1 35
  • 80.43 (n)
  • 82.19 (a)
BARX1 36
  • 75 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia BARX1 36
  • 73 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100491751 35
  • 69.1 (n)
  • 76.52 (a)
zebrafish
(Danio rerio)
Actinopterygii barx1 35
  • 65.8 (n)
  • 72.73 (a)
barx1 36
  • 69 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 30 (a)
OneToMany
Species with no ortholog for BARX1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BARX1 Gene

ENSEMBL:
Gene Tree for BARX1 (if available)
TreeFam:
Gene Tree for BARX1 (if available)

Paralogs for BARX1 Gene

Selected SIMAP similar genes for BARX1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with BARX1: view

Variants for BARX1 Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for BARX1 Gene

Q9HBU1-BARX1_HUMAN
The polymorphism is not associated with Axenfeld-Reiger syndrome (ARS), iridogoniodysgenesis syndrome (IGDS) or related ocular malformations

Sequence variations from dbSNP and Humsavar for BARX1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs1057713 -- 93,951,879(-) ACGCG(C/T)ATTCA utr-variant-3-prime
rs1057715 -- 93,951,837(-) TCTGG(A/G)GCCTG utr-variant-3-prime
rs1343899 -- 93,953,125(+) CAGCC(C/T)TGAAC missense, reference
rs2297835 -- 93,952,147(+) GGCCC(A/C)GCACC utr-variant-3-prime
rs4743940 -- 93,953,447(+) TCTGA(A/G)ATCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BARX1 Gene

Variant ID Type Subtype PubMed ID
nsv893589 CNV Gain 21882294
nsv509312 CNV Insertion 20534489
nsv824993 CNV Gain 20364138
nsv893590 CNV Loss 21882294

Relevant External Links for BARX1 Gene

HapMap Linkage Disequilibrium report
BARX1
Human Gene Mutation Database (HGMD)
BARX1

Disorders for BARX1 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for BARX1 Gene including...

Search for BARX1 Gene in MalaCards »

(1) University of Copenhagen DISEASES for BARX1 Gene

Relevant External Links for BARX1

Genetic Association Database (GAD)
BARX1
Human Genome Epidemiology (HuGE) Navigator
BARX1
genes like me logo Genes that share disorders with BARX1: view

No data available for UniProtKB/Swiss-Prot for BARX1 Gene

Publications for BARX1 Gene

  1. Cloning, characterization, localization, and mutational screening of the human BARX1 gene. (PMID: 10995576) Gould D.B. … Walter M.A. (Genomics 2000) 3 4 23
  2. Candidate gene/loci studies in cleft lip/palate and dental anomalies finds novel susceptibility genes for clefts. (PMID: 18978678) Vieira A.R. … Marazita M.L. (Genet. Med. 2008) 3 48
  3. Maternal genes and facial clefts in offspring: a comprehensive search for genetic associations in two population-based cleft studies from Scandinavia. (PMID: 20634891) Jugessur A. … Murray J.C. (PLoS ONE 2010) 3 48
  4. A directed protein interaction network for investigating intracellular signal transduction. (PMID: 21900206) Vinayagam A. … Wanker E.E. (Sci Signal 2011) 3
  5. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J. … Yang X. (Mol. Syst. Biol. 2011) 3

Products for BARX1 Gene

Sources for BARX1 Gene

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