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Aliases & Descriptions for BAP1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DKFZp686N04275 2 | | EC 3.4.19.12 3 | | FLJ35406 2 | | FLJ37180 2 | | HUCEP-13 2 | | KIAA0272 1, 2, 3 | | UCHL2 1, 2 | | hucep-6 1, 2 |
| | | Descriptions |
|---|
| BRCA1 associated protein-1 2 | BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) 2 | | BRCA1-associated protein 1 3 | | Cerebral protein 6 3 | | cerebral protein-13 2 | | cerebral protein-6 2 | | ubiquitin carboxy-terminal hydrolase 2 |
|
| | Search outside databases for aliases for BAP1 genePrevious GC identifers: GC03M051527 GC03M051687 GC03M052290 GC03M052393 |
Summaries for BAP1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for BAP1: The protein encoded by this gene localizes to the nucleus and it interacts with the RING finger domain of the breast cancer 1, early onset protein (BRCA1). This gene is thought to be a tumor suppressor gene that functions in the BRCA1 growth control pathway. There are multiple polyadenylation sites found in this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: BAP1_HUMAN, Q92560Function: Deubiquitinating enzyme which may be involved in BRCA1 signal transduction pathwayGene Wiki entry for BAP1 |
Genomic Location for BAP1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the BAP1 gene 
Entrez Gene cytogenetic band: 3p21.31-p21.2 Ensembl cytogenetic band: 3p21.1 HGNC cytogenetic band: 3p21.31-p21.2BAP1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03M052410:
(about GC identifiers)
Start:
|
52,410,064 bp from pter |
End:
|
52,419,058 bp from pter |
Size:
|
8,995 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000003.10 NT_022517.17
| Proteins for BAP1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: BAP1_HUMAN, Q92560 (See
protein sequence)Recommended Name: Ubiquitin carboxyl-terminal hydrolase BAP1 Size: 729 amino acids; 80362 Da
Subunit: Interacts with the RING finger domain of BRCA1
Subcellular location: Nucleus
Secondary accessions: Q6LEM0 Q7Z5E8Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_004647.1
ENSEMBL proteins: ENSP00000296288
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: BAP1 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for BAP1: Assays for BAP1: | Protein
Domains/ Families for BAP1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q92560
ProtoNet protein and cluster: Q92560 1 Blocks protein family: IPB001578 Ubiquitin carboxyl-terminal hydrolase
UniProtKB/Swiss-Prot: BAP1_HUMAN, Q92560Similarity: Belongs to the peptidase C12 family | Gene Function for BAP1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004656
Applied Biosystems Silencer® siRNAs for BAP1
Sigma-Aldrich siRNA and siRNA Panels for BAP1  Sigma-Aldrich shRNA Panels and shRNA for BAP1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004656                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004656                                  untagged cDNA clones in CMV expression vector (see all 3): NM_004656 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004656
UniProtKB/Swiss-Prot: BAP1_HUMAN, Q92560Function: Deubiquitinating enzyme which may be involved in BRCA1 signal transduction pathwayCatalytic activity: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal)Enzyme Number (IUBMB): EC 3.4.19.12 Genatlas biochemistry entry for BAP1:BRCA1 associated protein 1,widely expressed,binding to the BRCA1 RING finger domain and enhancing BRCA1-mediated cell growth suppression1 MGI phenotypic allele for Bap1 (no phenotypes)
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for BAP1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for BAP1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for BAP1 
1 Interacting protein for BAP1 (ENSP000002962883 Q925601) via UniProtKB, MINT, and/or STRINGAbout this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for BAP1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for BAP1
|
Transcripts for BAP1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004656
Sigma-Aldrich siRNA and siRNA Panels for BAP1  Sigma-Aldrich shRNA Panels and shRNA for BAP1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004656 REFSEQ mRNAs for BAP1 gene: NM_004656.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004656               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004656                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004656                                  untagged cDNA clones in CMV expression vector (see all 3): NM_004656  Additional cDNA sequence: AB002534.1 AF045581.1 AK092725.1 AK094499.1 AK225494.1 AK292608.1 AK295395.1 AK307274.1 AY130008.1 BC001596.1 BX647318.1 D87462.2 D88812.1 18 DOTS entries: DT.217303 DT.91763316 DT.102820838 DT.100795050 DT.100795049 DT.120914317 DT.120914340 DT.120914236 DT.100032503 DT.120914364 DT.86854177 DT.97791879 DT.100029516 DT.100795048 DT.102820839 DT.120914363 DT.120914282 DT.80100384 24/369 AceView cDNA sequences (see all 369
):BU846231 BX508658 AI963987 Z45707 BE713073 AI917782 BU145192 CK430805 BE535499 AI675206 BM451889 BQ941857 AI401328 AA742202 BQ058097 BM556538 BQ955178 BQ217330 BC001596 BE464104 Z41371 BF196085 AU125284 BX500239
highest scoring ESTs for BAP1:AF045581 BC001596 BE207318 BE277104 BE730762 BE736910 BF309296 BF966464 BF967313 BG036825 Unigene Cluster for BAP1: BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) Hs.106674 [show with all ESTs]Unigene Representative Sequence: NM_004656
GeneLoc Exon Structure
5/13 Alternative Splicing Database (ASD) splice patterns (SP) for BAP1 (see all 13
)
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7a | · | 7b | · | 7c | ^ | 8a | · | 8b | ^ | 9 | ^ | 10a | · | 10b | ^ | 11a | · | 11b | · | 11c | ^ | 12 | ^ | 13 | ^ | 14a | · | 14b | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18a | · | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |
| SP2: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |
| SP4: | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 18b | · | 18c | ^ | 19 | ^ | 20a | · | 20b | · | 20c | · | 20d | · | 20e | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for BAP1
1 Ensembl transcript including schematic representation: ENST00000296288
|
Expression for BAP1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| BAP1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for BAP1
1 / 2 / 3 4 probe-sets matching BAP1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GCCTCTGCCA
SOURCE GeneReport for Unigene cluster: Hs.106674
Expression variation in blood from EXPOLDB for BAP1 UniProtKB/Swiss-Prot: BAP1_HUMAN, Q92560Tissue specificity: Highly expressed in testis, placenta and ovary. Expressed in breast |
Orthologs for BAP1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for BAP1 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for BAP1
ENSEMBL Gene Tree for BAP1 | Paralogs for BAP1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for BAP1 gene
- UCHL52
|
SNPs/Variants for BAP1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for BAP1 (up to first 250kb)
|
Disorders & Mutations for BAP1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 603089
UniProtKB/Swiss-Prot: BAP1_HUMAN, Q92560
Defects in BAP1 are found in non-small cell lung cancer (NSCLC) cell lines Tumor-associated antigen found in several childhood medulloblastoma3 Novoseek disease relationships for BAP1 gene
About this table
Human Genome Epidemiology Navigator: BAP1 (4 documents)
|
Medical News for BAP1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for BAP1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/32 PubMed articles for BAP1 gene (see all 32
):- BAP1: a novel ubiquitin hydrolase which binds to the BRCA1 RING finger and enhances BRCA1-mediated cell growth suppression. (PubMed id 9528852)1, 2, 3, 4 Jensen D.E.... Rauscher F.J. III (1998)
- Novel tumor antigens identified by autologous antibody screening of childhood medulloblastoma cDNA libraries. (PubMed id 12800201)1, 3, 4 Behrends U.... Mautner J. (2003)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935)3, 4 Beausoleil S.A....Gygi S.P. (2004)
- Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PubMed id 12168954)3, 4 Nakajima D.... Nagase T. (2002)
- Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain. (PubMed id 9039502)3, 4 Nagase T....Nomura N. (1996)
- BRCA1-associated protein 1 interferes with BRCA1/BARD1 RING heterodimer activity. (PubMed id 19117993)1, 3 Nishikawa H....Ohta T. (2009)
- Genetic sequence variations of BRCA1-interacting genes AURKA, BAP1, BARD1 and DHX9 in French Canadian Families with high risk of breast cancer. (PubMed id 19197335)1, 3 GuAcnard F....Durocher F. (2009)
- Identification of neuroglycan C and interacting partners as potential susceptibility genes for schizophrenia in a Southern Chinese population. (PubMed id 19367581)3 So H.C....Sham P.C. (2009)
- Evaluating new candidate SNPs as low penetrance risk factors in sporadic breast cancer: a two-stage Spanish case-control study. (PubMed id 18950845)3 Vega A....Carracedo A. (2009)
|
Search for BAP1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing BAP1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing BAP1
(According to HUGE)
About This Section
| |
Specialized Databases showing BAP1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for BAP1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for BAP1:

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Incremental update: 13 Oct 2009
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