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BANCR Gene(RNA Gene)

BRAF-Activated Non-Protein Coding RNA

GCID:
GC09M069296
GIFtS:
12
Genes Participants
UDN Logo

Aliases for BANCR Gene

Subcategory (RNA class) for BANCR Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BANCR Gene

  • BRAF-Activated Non-Protein Coding RNA 2 3 5
  • LINC00586 3

External Ids for BANCR Gene

Previous GeneCards Identifiers for BANCR Gene

  • GC00U934042
  • GC09U901795

Summaries for BANCR Gene

GeneCards Summary for BANCR Gene

BANCR (BRAF-Activated Non-Protein Coding RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BANCR Gene

Genomics for BANCR Gene

Products:

  1. Regulatory Element

Regulatory Elements for BANCR Gene

Enhancers for BANCR Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G069306 1.1 Ensembl ENCODE 0.7 -1.0 -1002 2.8 CAVIN1 HDAC8 POLR2H CREB3 SP1 NR2C1 KDM1A ZNF24 ESRRA TEAD4 FAM189A2 BANCR
GH09G069296 1.1 ENCODE 0.4 +10.6 10554 0.8 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF143 SMC5 FAM189A2 PTAR1 MAMDC2 FAM122A BANCR GC09P069244
GH09G069283 0.4 ENCODE 0.3 +23.9 23857 0.2 EZH2 FAM189A2 BANCR GC09P069244
GH09G069273 0.2 ENCODE 0.3 +33.6 33607 0.5 FAM189A2 GC09P069244 BANCR
GH09G069253 0.2 ENCODE 0.2 +53.8 53827 0.1 GC09P069244 BANCR
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BANCR on UCSC Golden Path with GeneCards custom track

Genomic Location for BANCR Gene

Chromosome:
9
Start:
69,296,681 bp from pter
End:
69,307,056 bp from pter
Size:
10,376 bases
Orientation:
Minus strand

Genomic View for BANCR Gene

Genes around BANCR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BANCR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BANCR Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for BANCR Gene

Proteins for BANCR Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for BANCR Gene

No Post-translational modifications

No data available for DME Specific Peptides for BANCR Gene

Domains & Families for BANCR Gene

Gene Families for BANCR Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BANCR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BANCR Gene

Function for BANCR Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BANCR Gene

Localization for BANCR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BANCR Gene

Pathways & Interactions for BANCR Gene

SuperPathways for BANCR Gene

PathCards logo More details on SuperPathways for BANCR
No Data Available

Interacting Proteins for BANCR Gene

Gene Ontology (GO) - Biological Process for BANCR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BANCR Gene

Drugs & Compounds for BANCR Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for BANCR Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for BANCR Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BANCR Gene

BRAF-activated non-protein coding RNA:
Representative Sequences:

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BANCR Gene

No ASD Table

Relevant External Links for BANCR Gene

GeneLoc Exon Structure for
BANCR
ECgene alternative splicing isoforms for
BANCR

Expression for BANCR Gene

Products:

  1. Primer

NURSA nuclear receptor signaling pathways regulating expression of BANCR Gene:

BANCR

SOURCE GeneReport for Unigene cluster for BANCR Gene:

Hs.49768
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BANCR Gene

Orthologs for BANCR Gene

Evolution for BANCR Gene

ENSEMBL:
Gene Tree for BANCR (if available)
TreeFam:
Gene Tree for BANCR (if available)

No data available for Orthologs for BANCR Gene

Paralogs for BANCR Gene

No data available for Paralogs for BANCR Gene

Variants for BANCR Gene

Sequence variations from dbSNP and Humsavar for BANCR Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000337160 -- 69,303,131(+) GTCAC(-/AT)GTGTA intron-variant
rs1000729292 -- 69,304,825(+) ATGAT(C/T)GAGTA intron-variant
rs1000814958 -- 69,305,439(+) GATTT(C/T)CCCCA intron-variant
rs1000857162 -- 69,298,463(+) AGGCG(C/T)AAGCT intron-variant
rs1000918313 -- 69,300,440(+) TAGGG(C/G)TTGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BANCR Gene

Variant ID Type Subtype PubMed ID
dgv7665n100 CNV gain 25217958
nsv614548 CNV gain 21841781
nsv831610 CNV gain 17160897

Relevant External Links for BANCR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BANCR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BANCR Gene

Disorders for BANCR Gene

Relevant External Links for BANCR

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BANCR

No disorders were found for BANCR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BANCR Gene

Publications for BANCR Gene

  1. Downregulation of BRAF activated non-coding RNA is associated with poor prognosis for non-small cell lung cancer and promotes metastasis by affecting epithelial-mesenchymal transition. (PMID: 24655544) Sun M. … Wang Z.X. (Mol. Cancer 2014) 2 3 64
  2. BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration. (PMID: 22581800) Flockhart R.J. … Khavari P.A. (Genome Res. 2012) 2 3 64
  3. Epigenetics. Going places with BANCR. (PMID: 22673151) McCarthy N. (Nat. Rev. Cancer 2012) 2 3 64
  4. Upregulation of the long non-coding RNA BANCR correlates with tumor progression and poor prognosis in esophageal squamous cell carcinoma. (PMID: 27470379) Liu Z. … Cao X. (Biomed. Pharmacother. 2016) 3 64
  5. Long Non-Coding RNA BANCR Promotes Endometrial Cancer Cell Proliferation and Invasion by Regulating MMP2 and MMP1 via ERK/MAPK Signaling Pathway. (PMID: 27898420) Wang D. … Ren X. (Cell. Physiol. Biochem. 2016) 3 64

Products for BANCR Gene

Sources for BANCR Gene

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