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Aliases for BANCR Gene

Subcategory (RNA class) for BANCR Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BANCR Gene

  • BRAF-Activated Non-Protein Coding RNA 2 3 5
  • LINC00586 3

External Ids for BANCR Gene

Previous GeneCards Identifiers for BANCR Gene

  • GC00U934042
  • GC09U901795

Summaries for BANCR Gene

GeneCards Summary for BANCR Gene

BANCR (BRAF-Activated Non-Protein Coding RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BANCR Gene

Genomics for BANCR Gene

Regulatory Elements for BANCR Gene

Enhancers for BANCR Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F069306 1 Ensembl ENCODE 0.8 -1.0 -1002 2.8 ESRRA DDX20 TEAD4 ZNF175 PTRF BACH1 PYGO2 TEAD3 POLR2A NFE2 FAM189A2 BANCR
GH09F069296 1.1 ENCODE 0.4 +10.6 10554 0.8 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 SMC5 FAM189A2 PTAR1 MAMDC2 FAM122A BANCR GC09P069244
GH09F069283 0.2 ENCODE 0.3 +23.9 23857 0.2 FAM189A2 BANCR GC09P069244
GH09F069273 0.2 ENCODE 0.3 +33.6 33607 0.5 FAM189A2 GC09P069244 BANCR
GH09F069265 0.2 Ensembl 0.2 +41.1 41056 0.4 FAM189A2 GC09P069244 BANCR
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BANCR on UCSC Golden Path with GeneCards custom track

Genomic Location for BANCR Gene

Chromosome:
9
Start:
69,296,681 bp from pter
End:
69,307,056 bp from pter
Size:
10,376 bases
Orientation:
Minus strand

Genomic View for BANCR Gene

Genes around BANCR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BANCR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BANCR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BANCR Gene

Proteins for BANCR Gene

Post-translational modifications for BANCR Gene

No Post-translational modifications

No data available for DME Specific Peptides for BANCR Gene

Domains & Families for BANCR Gene

Gene Families for BANCR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BANCR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BANCR Gene

Function for BANCR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BANCR Gene

Localization for BANCR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BANCR Gene

Pathways & Interactions for BANCR Gene

SuperPathways for BANCR Gene

No Data Available

Interacting Proteins for BANCR Gene

Gene Ontology (GO) - Biological Process for BANCR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BANCR Gene

Transcripts for BANCR Gene

mRNA/cDNA for BANCR Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BANCR Gene

BRAF-activated non-protein coding RNA:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BANCR Gene

No ASD Table

Relevant External Links for BANCR Gene

GeneLoc Exon Structure for
BANCR
ECgene alternative splicing isoforms for
BANCR

Expression for BANCR Gene

NURSA nuclear receptor signaling pathways regulating expression of BANCR Gene:

BANCR

SOURCE GeneReport for Unigene cluster for BANCR Gene:

Hs.49768
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for BANCR Gene

Orthologs for BANCR Gene

Evolution for BANCR Gene

ENSEMBL:
Gene Tree for BANCR (if available)
TreeFam:
Gene Tree for BANCR (if available)

No data available for Orthologs for BANCR Gene

Paralogs for BANCR Gene

No data available for Paralogs for BANCR Gene

Variants for BANCR Gene

Sequence variations from dbSNP and Humsavar for BANCR Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10118064 -- 69,297,334(+) TAGAT(C/T)GCGTC intron-variant
rs10121733 -- 69,296,650(+) TATTT(C/T)TGTGG downstream-variant-500B
rs10122850 -- 69,298,780(+) gagtg(A/T)gttgc intron-variant
rs10123485 -- 69,298,782(+) gtgag(A/T)tgccc intron-variant
rs10249 -- 69,296,768(-) ACCAC(A/C)TTGAT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for BANCR Gene

Variant ID Type Subtype PubMed ID
nsv831610 CNV gain 17160897
nsv614548 CNV gain 21841781
dgv7665n100 CNV gain 25217958

Relevant External Links for BANCR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BANCR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BANCR Gene

Disorders for BANCR Gene

Relevant External Links for BANCR

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BANCR

No disorders were found for BANCR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BANCR Gene

Publications for BANCR Gene

  1. Downregulation of BRAF activated non-coding RNA is associated with poor prognosis for non-small cell lung cancer and promotes metastasis by affecting epithelial-mesenchymal transition. (PMID: 24655544) Sun M. … Wang Z.X. (Mol. Cancer 2014) 2 3 64
  2. BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration. (PMID: 22581800) Flockhart R.J. … Khavari P.A. (Genome Res. 2012) 2 3 64
  3. Epigenetics. Going places with BANCR. (PMID: 22673151) McCarthy N. (Nat. Rev. Cancer 2012) 2 3 64
  4. Downregulated Long Noncoding RNA BANCR Promotes the Proliferation of Colorectal Cancer Cells via Downregualtion of p21 Expression. (PMID: 25928067) Shi Y. … Feng J. (PLoS ONE 2015) 3 64
  5. Fentanyl inhibits the invasion and migration of colorectal cancer cells via inhibiting the negative regulation of Ets-1 on BANCR. (PMID: 26296467) Li A.X. … Ma C.G. (Biochem. Biophys. Res. Commun. 2015) 3 64

Products for BANCR Gene

Sources for BANCR Gene

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