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Aliases for BANCR Gene

Subcategory (RNA class) for BANCR Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BANCR Gene

  • BRAF-Activated Non-Protein Coding RNA 2 3 5
  • LINC00586 3

External Ids for BANCR Gene

Previous GeneCards Identifiers for BANCR Gene

  • GC00U934042
  • GC09U901795

Summaries for BANCR Gene

GeneCards Summary for BANCR Gene

BANCR (BRAF-Activated Non-Protein Coding RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BANCR Gene

Genomics for BANCR Gene

Regulatory Elements for BANCR Gene

Enhancers for BANCR Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around BANCR on UCSC Golden Path with GeneCards custom track

Genomic Location for BANCR Gene

Chromosome:
9
Start:
69,296,681 bp from pter
End:
69,307,056 bp from pter
Size:
10,376 bases
Orientation:
Minus strand

Genomic View for BANCR Gene

Genes around BANCR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BANCR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BANCR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BANCR Gene

Proteins for BANCR Gene

Post-translational modifications for BANCR Gene

No Post-translational modifications

No data available for DME Specific Peptides for BANCR Gene

Domains & Families for BANCR Gene

Gene Families for BANCR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BANCR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BANCR Gene

Function for BANCR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BANCR Gene

Localization for BANCR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BANCR Gene

Pathways & Interactions for BANCR Gene

SuperPathways for BANCR Gene

No Data Available

Interacting Proteins for BANCR Gene

Gene Ontology (GO) - Biological Process for BANCR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BANCR Gene

Drugs & Compounds for BANCR Gene

No Compound Related Data Available

Transcripts for BANCR Gene

mRNA/cDNA for BANCR Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BANCR Gene

BRAF-activated non-protein coding RNA:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BANCR Gene

No ASD Table

Relevant External Links for BANCR Gene

GeneLoc Exon Structure for
BANCR
ECgene alternative splicing isoforms for
BANCR

Expression for BANCR Gene

SOURCE GeneReport for Unigene cluster for BANCR Gene Hs.49768

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for BANCR Gene

Orthologs for BANCR Gene

Evolution for BANCR Gene

ENSEMBL:
Gene Tree for BANCR (if available)
TreeFam:
Gene Tree for BANCR (if available)

No data available for Orthologs for BANCR Gene

Paralogs for BANCR Gene

No data available for Paralogs for BANCR Gene

Variants for BANCR Gene

Sequence variations from dbSNP and Humsavar for BANCR Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1339545 -- 69,297,819(-) TCACA(A/T)TGAAC intron-variant
rs1416737 -- 69,298,334(-) GCAGA(C/G)AGCTG intron-variant
rs7853984 -- 69,298,296(+) AGCAG(A/G)TTGTG intron-variant
rs7857529 -- 69,304,114(+) agata(C/T)gtgat intron-variant
rs7859876 -- 69,308,096(+) CCAGA(A/T)GGTTT upstream-variant-2KB

Relevant External Links for BANCR Gene

HapMap Linkage Disequilibrium report
BANCR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BANCR Gene

Disorders for BANCR Gene

Relevant External Links for BANCR

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BANCR

No disorders were found for BANCR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BANCR Gene

Publications for BANCR Gene

  1. Downregulation of BRAF activated non-coding RNA is associated with poor prognosis for non-small cell lung cancer and promotes metastasis by affecting epithelial-mesenchymal transition. (PMID: 24655544) Sun M. … Wang Z.X. (Mol. Cancer 2014) 2 3 67
  2. BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration. (PMID: 22581800) Flockhart R.J. … Khavari P.A. (Genome Res. 2012) 2 3
  3. Epigenetics. Going places with BANCR. (PMID: 22673151) McCarthy N. (Nat. Rev. Cancer 2012) 2 3
  4. Long non-coding RNA BANCR promotes proliferation and migration of lung carcinoma via MAPK pathways. (PMID: 25661343) Jiang W. … Tian D. (Biomed. Pharmacother. 2015) 3
  5. Long non-coding RNA BANCR regulates growth and metastasis and is associated with poor prognosis in retinoblastoma. (PMID: 25894373) Su S. … Wang Z. (Tumour Biol. 2015) 3

Products for BANCR Gene

Sources for BANCR Gene

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