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BAIAP3 Gene(Protein Coding)

BAI1 Associated Protein 3

GCID:
GC16P001333
GIFtS:
54
Genes Participants
UDN Logo

Aliases for BAIAP3 Gene

Aliases for BAIAP3 Gene

  • BAI1 Associated Protein 3 2 3 5
  • BAI1-Associated Protein 3 2 3
  • BAP3 3 4
  • BAI-Associated Protein 3 3
  • KIAA0734 4

External Ids for BAIAP3 Gene

Previous GeneCards Identifiers for BAIAP3 Gene

  • GC16P001400
  • GC16P001324
  • GC16P001383

Summaries for BAIAP3 Gene

Entrez Gene Summary for BAIAP3 Gene

  • This p53-target gene encodes a brain-specific angiogenesis inhibitor. The protein is a seven-span transmembrane protein and a member of the secretin receptor family. It interacts with the cytoplasmic region of brain-specific angiogenesis inhibitor 1. This protein also contains two C2 domains, which are often found in proteins involved in signal transduction or membrane trafficking. Its expression pattern and similarity to other proteins suggest that it may be involved in synaptic functions. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2010]

GeneCards Summary for BAIAP3 Gene

BAIAP3 (BAI1 Associated Protein 3) is a Protein Coding gene. Diseases associated with BAIAP3 include Alpha Thalassemia-Intellectual Disability Syndrome Type 1. Among its related pathways are Transcriptional misregulation in cancer. GO annotations related to this gene include protein C-terminus binding. An important paralog of this gene is UNC13D.

Gene Wiki entry for BAIAP3 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BAIAP3 Gene

Genomics for BAIAP3 Gene

Products:

  1. Regulatory Element

Regulatory Elements for BAIAP3 Gene

Enhancers for BAIAP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G001330 1.9 FANTOM5 Ensembl ENCODE dbSUPER 23.3 -0.8 -764 5.1 PKNOX1 FOXA2 ZFP64 ARID4B SIN3A ETS1 GLIS2 CBX5 ZNF143 ZNF263 BAIAP3 UBE2I MAPK8IP3 UNKL SPSB3 EME2 RPS20P2
GH16G001296 1.6 Ensembl ENCODE dbSUPER 17.2 -34.4 -34418 5.3 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 ARID4B SIN3A ZBTB7B YY1 BAIAP3 UBE2I RPS20P2 TPSD1 GNPTG TSR3 ENSG00000261505 WFIKKN1 JPT2 ENSG00000260710
GH16G001342 1.3 ENCODE dbSUPER 15 +9.4 9379 1.5 HDGF PKNOX1 ATF1 AGO1 ARID4B SIN3A ZNF2 ZBTB7B YY1 GLIS2 BAIAP3 GNPTG CCDC154 GC16M001350
GH16G001375 0.7 dbSUPER 25.4 +42.4 42355 1.6 CTCF PKNOX1 AGO1 NFXL1 POLR2A PATZ1 ZNF143 ZNF263 SP3 MAZ GNPTG BAIAP3 CCDC154 TSR3 RPS20P2 TPSD1 MAPK8IP3 GC16P001373 GC16P001386
GH16G001350 1.1 ENCODE 14.5 +18.0 18010 2.4 MLX ARNT CREB3L1 ARID4B SIN3A YY1 ZNF207 ZNF143 FOS KLF13 BAIAP3 GNPTG LOC102724014
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BAIAP3 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the BAIAP3 gene promoter:

Genomic Location for BAIAP3 Gene

Chromosome:
16
Start:
1,333,601 bp from pter
End:
1,349,441 bp from pter
Size:
15,841 bases
Orientation:
Plus strand

Genomic View for BAIAP3 Gene

Genes around BAIAP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BAIAP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BAIAP3 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for BAIAP3 Gene

Proteins for BAIAP3 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for BAIAP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O94812-BAIP3_HUMAN
    Recommended name:
    BAI1-associated protein 3
    Protein Accession:
    O94812
    Secondary Accessions:
    • A2A2B2
    • B2RCD7
    • B4DGS5
    • B4DIK3
    • B4DRK9
    • B4DRP1
    • E7EUB9
    • H3BUH8
    • H3BVI3
    • H7C2Q1
    • O94839
    • Q2M226
    • Q658J2
    • Q76N05
    • Q96RZ3
    • Q9UJK1

    Protein attributes for BAIAP3 Gene

    Size:
    1187 amino acids
    Molecular mass:
    131901 Da
    Quaternary structure:
    • Interacts with BAI1.
    SequenceCaution:
    • Sequence=BAA34454.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=BAG57886.1; Type=Erroneous termination; Positions=717; Note=Translated as Gly.; Evidence={ECO:0000305};

    Alternative splice isoforms for BAIAP3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BAIAP3 Gene

Protein Expression for BAIAP3 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for BAIAP3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for BAIAP3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for BAIAP3 Gene

Domains & Families for BAIAP3 Gene

Gene Families for BAIAP3 Gene

HGNC:

Protein Domains for BAIAP3 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for BAIAP3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BAIAP3: view

No data available for UniProtKB/Swiss-Prot for BAIAP3 Gene

Function for BAIAP3 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for BAIAP3 Gene

GENATLAS Biochemistry:
brain-specific angiogenesis inhibitor (BAI1)-associated protein 3,predominantly expressed in brain,homolog to synaptotagmin,potentially regulating the release of neurotransmitters

Gene Ontology (GO) - Molecular Function for BAIAP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008022 protein C-terminus binding TAS 9790924
genes like me logo Genes that share ontologies with BAIAP3: view
genes like me logo Genes that share phenotypes with BAIAP3: view

Animal Models for BAIAP3 Gene

MGI Knock Outs for BAIAP3:

Animal Model Products

CRISPR Products

miRNA for BAIAP3 Gene

miRTarBase miRNAs that target BAIAP3

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for BAIAP3 Gene

Localization for BAIAP3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BAIAP3 gene
Compartment Confidence
endoplasmic reticulum 3
nucleus 2
extracellular 1
mitochondrion 1
peroxisome 1
cytosol 1
lysosome 1

Gene Ontology (GO) - Cellular Components for BAIAP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IBA --
GO:0098793 presynapse IEA --
genes like me logo Genes that share ontologies with BAIAP3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for BAIAP3 Gene

Pathways & Interactions for BAIAP3 Gene

genes like me logo Genes that share pathways with BAIAP3: view

Pathways by source for BAIAP3 Gene

1 KEGG pathway for BAIAP3 Gene

Interacting Proteins for BAIAP3 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000324510%0d%0a9606.ENSP00000313046%0d%0a9606.ENSP00000380256%0d%0a
Selected Interacting proteins: O94812-BAIP3_HUMAN ENSP00000324510 for BAIAP3 Gene via IID STRING

Gene Ontology (GO) - Biological Process for BAIAP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IPI 9790924
GO:0007269 neurotransmitter secretion TAS 9790924
genes like me logo Genes that share ontologies with BAIAP3: view

No data available for SIGNOR curated interactions for BAIAP3 Gene

Drugs & Compounds for BAIAP3 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for BAIAP3 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for BAIAP3 Gene

(9) REFSEQ mRNAs :
(12) Additional mRNA sequences :
(87) Selected AceView cDNA sequences:
(16) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BAIAP3 Gene

BAI1-associated protein 3:
Representative Sequences:

CRISPR Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BAIAP3 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11a · 11b · 11c ^ 12a · 12b ^ 13a · 13b ^ 14 ^
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11: -
SP12: - -
SP13: -
SP14: - -
SP15: -
SP16:
SP17:
SP18:
SP19:
SP20:
SP21:
SP22: - -
SP23:
SP24: -

ExUns: 15a · 15b · 15c · 15d ^ 16a · 16b · 16c ^ 17a · 17b ^ 18 ^ 19 ^ 20 ^ 21a · 21b · 21c ^ 22 ^ 23a · 23b ^ 24a · 24b ^ 25a · 25b · 25c ^ 26 ^ 27a · 27b ^
SP1: -
SP2:
SP3:
SP4:
SP5:
SP6:
SP7: -
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:
SP19:
SP20:
SP21:
SP22:
SP23:
SP24:

ExUns: 28a · 28b · 28c ^ 29 ^ 30a · 30b ^ 31 ^ 32 ^ 33a · 33b ^ 34
SP1:
SP2: -
SP3:
SP4: - -
SP5: -
SP6:
SP7:
SP8:
SP9:
SP10: -
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:
SP19:
SP20:
SP21:
SP22:
SP23: - - -
SP24:

Relevant External Links for BAIAP3 Gene

GeneLoc Exon Structure for
BAIAP3
ECgene alternative splicing isoforms for
BAIAP3

Expression for BAIAP3 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BAIAP3 Gene

mRNA expression in normal human tissues for BAIAP3 Gene
mRNA expression by BioGPS for BAIAP3 GenemRNA expression by GTEx for BAIAP3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for BAIAP3 Gene

This gene is overexpressed in Pituitary (x22.4) and Brain - Hypothalamus (x5.6).

Protein differential expression in normal tissues from HIPED for BAIAP3 Gene

This gene is overexpressed in Frontal cortex (26.3), Liver (21.1), Brain (12.2), and Peripheral blood mononuclear cells (9.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for BAIAP3 Gene



Protein tissue co-expression partners for BAIAP3 Gene

NURSA nuclear receptor signaling pathways regulating expression of BAIAP3 Gene:

BAIAP3

SOURCE GeneReport for Unigene cluster for BAIAP3 Gene:

Hs.458427

mRNA Expression by UniProt/SwissProt for BAIAP3 Gene:

O94812-BAIP3_HUMAN
Tissue specificity: Predominantly expressed in brain.

Evidence on tissue expression from TISSUES for BAIAP3 Gene

  • Nervous system(5)
  • Liver(4.4)
genes like me logo Genes that share expression patterns with BAIAP3: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for BAIAP3 Gene

Orthologs for BAIAP3 Gene

This gene was present in the common ancestor of animals.

Orthologs for BAIAP3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia BAIAP3 34 35
  • 97.7 (n)
cow
(Bos Taurus)
 Mammalia BAIAP3 34 35
  • 86.42 (n)
dog
(Canis familiaris)
 Mammalia BAIAP3 34 35
  • 85.25 (n)
mouse
(Mus musculus)
 Mammalia Baiap3 34 16 35
  • 85.12 (n)
oppossum
(Monodelphis domestica)
 Mammalia BAIAP3 35
  • 63 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia BAIAP3 35
  • 57 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia baiap3 34
  • 58.68 (n)
Str.19005 34
zebrafish
(Danio rerio)
 Actinopterygii baiap3 34 35
  • 57.73 (n)
African malaria mosquito
(Anopheles gambiae)
 Insecta AgaP_AGAP005816 34
  • 50.31 (n)
fruit fly
(Drosophila melanogaster)
 Insecta unc-13-4A 36 34 35
  • 48.41 (n)
CG11819 36
  • 22 (a)
CG34349 35
  • 22 (a)
 ManyToMany
worm
(Caenorhabditis elegans)
 Secernentea F54G2.1 36 34 35
  • 43.54 (n)
sea squirt
(Ciona savignyi)
 Ascidiacea -- 35
  • 28 (a)
 OneToMany
Species where no ortholog for BAIAP3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for BAIAP3 Gene

ENSEMBL:
Gene Tree for BAIAP3 (if available)
TreeFam:
Gene Tree for BAIAP3 (if available)

Paralogs for BAIAP3 Gene

Paralogs for BAIAP3 Gene

(1) SIMAP similar genes for BAIAP3 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with BAIAP3: view

Variants for BAIAP3 Gene

Sequence variations from dbSNP and Humsavar for BAIAP3 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs796052185 Likely benign 1,346,605(+) CGCAG(C/G)CCGTG reference, missense
rs1000119435 -- 1,347,075(+) AGGGC(G/T)GTCCA intron-variant
rs1000150188 -- 1,333,850(+) GTCCG(G/T)GTCCC intron-variant, upstream-variant-2KB
rs1000172157 -- 1,347,211(+) GTGCT(A/G)CCTGG intron-variant
rs1000410815 -- 1,339,167(+) AGGTC(C/T)CCCTG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for BAIAP3 Gene

Variant ID Type Subtype PubMed ID
dgv1483e59 CNV duplication 20981092
dgv2692n100 CNV gain 25217958
esv2422427 CNV duplication 17116639
esv2750325 CNV deletion 23290073
esv2750326 CNV deletion 23290073
esv2762143 CNV gain 21179565
esv3637613 CNV loss 21293372
nsv1046314 CNV loss 25217958
nsv1117153 CNV tandem duplication 24896259
nsv1125107 CNV deletion 24896259
nsv1138405 CNV deletion 24896259
nsv1148565 CNV insertion 26484159
nsv428316 CNV gain+loss 18775914
nsv471066 CNV loss 18288195
nsv952899 CNV deletion 24416366
nsv974746 CNV duplication 23825009

Variation tolerance for BAIAP3 Gene

Residual Variation Intolerance Score: 38.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.32; 70.65% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BAIAP3 Gene

Human Gene Mutation Database (HGMD)
BAIAP3
SNPedia medical, phenotypic, and genealogical associations of SNPs for
BAIAP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BAIAP3 Gene

Disorders for BAIAP3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for BAIAP3 Gene - From: DISEASES

Disorder Aliases PubMed IDs
alpha thalassemia-intellectual disability syndrome type 1
  • alpha thalassemia-intellectual disability syndrome, deletion type
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for BAIAP3

Genetic Association Database (GAD)
BAIAP3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BAIAP3
genes like me logo Genes that share disorders with BAIAP3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BAIAP3 Gene

Publications for BAIAP3 Gene

  1. Cloning and characterization of BAP3 (BAI-associated protein 3), a C2 domain-containing protein that interacts with BAI1. (PMID: 9790924) Shiratsuchi T. … Nakamura Y. (Biochem. Biophys. Res. Commun. 1998) 2 3 4 22 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 3 4 64
  4. Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PMID: 12168954) Nakajima D. … Nagase T. (DNA Res. 2002) 3 4 64
  5. Sequence, structure and pathology of the fully annotated terminal 2 Mb of the short arm of human chromosome 16. (PMID: 11157797) Daniels R.J. … Higgs D.R. (Hum. Mol. Genet. 2001) 3 4 64

Products for BAIAP3 Gene

Sources for BAIAP3 Gene

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