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BAIAP2 Gene

protein-coding   GIFtS: 62

GC17P076623
BAI1-associated protein 2
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
BAP2 1, 2
FLAF3 2, 3
IRS-58 3
IRSP53 2, 5
IRSp53 3
IRSp53/58 3
Descriptions
BAI-associated protein 2 3
BAI1-associated protein 2 2, 3
Fas ligand-associated factor 3 2, 3
Insulin receptor substrate p53 2, 3
Insulin receptor substrate p53/p58 2, 3
Insulin receptor substrate protein of 53 kDa 3
Protein BAP2 3
brain-specific angiogenesis inhibitor 1-associated protein
2 2
External Ids
HGNC: 9471
Entrez Gene: 104582
UniProtKB: Q9UQB83
Ensembl: ENSG000001758667
Search outside databases for aliases for BAIAP2 gene

Previous GC identifers: GC17U990151 GC17P082371 GC17P079571 GC17P079709

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for BAIAP2:
The protein encoded by this gene has been identified as a brain-specific angiogenesis inhibitor
(BAI1)-binding protein. This adaptor protein links membrane bound G-proteins to cytoplasmic
effector proteins. This protein functions as an insulin receptor tyrosine kinase substrate and
suggests a role for insulin in the central nervous system. It also associates with a downstream
effector of Rho small G proteins, which is associated with the formation of stress fibers and
cytokinesis. This protein is involved in lamellipodia and filopodia formation in motile cells and
may affect neuronal growth-cone guidance. This protein has also been identified as interacting
with the dentatorubral-pallidoluysian atrophy gene, which is associated with an autosomal dominant
neurodegenerative disease. Alternative splicing results in multiple transcript variants encoding
distinct isoforms.

UniProtKB/Swiss-Prot: BAIP2_HUMAN, Q9UQB8
Function: Adapter protein that links membrane-bound small G-proteins to cytoplasmic effector
proteins. Necessary for CDC42-mediated reorganization of the actin cytoskeleton and for
RAC1-mediated membrane ruffling. Involved in the regulation of the actin cytoskeleton by WASF
family members and the Arp2/3 complex. Plays a role in neurite growth. Acts syngeristically with
ENAH to promote filipodia formation

Gene Wiki entry for BAIAP2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the BAIAP2 gene  

Entrez Gene cytogenetic band: 17q25   Ensembl cytogenetic band:  17q25.3   HGNC cytogenetic band: 17q25

BAIAP2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P076623:     (about GC identifiers)

Start:
76,623,546 bp from pter
End:
76,705,827 bp from pter
Size:
82,282 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000017.9  NT_024871.11  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: BAIP2_HUMAN, Q9UQB8 (See protein sequence)
Recommended Name: Brain-specific angiogenesis inhibitor 1-associated protein 2  
Size: 552 amino acids; 60868 Da
Subunit: Homodimer. Interacts with CDC42 and RAC1 that have been activated by GTP binding.
Interacts with ATN1, BAI1, EPS8, SHANK1, SHANK2, SHANK3, WASF1 and WASF2. Interacts with ENAH
after recruitment of CDC42. Interacts with TIAM1 and DIAPH1 (By similarity)
Subcellular location: Cytoplasm. Membrane; Peripheral membrane protein. Cell projection,
filopodium. Cell projection, ruffle. Note=Detected throughout the cytoplasm in the absence of
specific binding partners. Detected in filopodia and close to membrane ruffles
Caution: It is uncertain whether Met-1 or Met-59 is the initiator
PDB structure from and Proteopedia :
1WDZ (3D)    1Y2O (3D)    
Secondary accessions: O43858 Q53HB1 Q86WC1 Q8N5C0 Q96CR7 Q9UBR3 Q9UQ43
Alternative splicing: 6 isoforms:  Q9UQB8-1   Q9UQB8-2   Q9UQB8-3   Q9UQB8-4   Q9UQB8-5   Q9UQB8-6   

Post-translational modifications:

  • Phosphorylated on tyrosine residues by INSR in response to insulin treatment1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (4 alternative transcripts): 
    NP_001138360.1  NP_006331.1  NP_059344.1  NP_059345.1  


    ENSEMBL proteins: 
    ENSP00000316338 ENSP00000376211 ENSP00000313974 ENSP00000315685 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (BAI1 associated protein 2 isoform 3, BAIAP2)
    Human Recombinant Proteins from Abnova (BAIAP2)
                  OriGene Purified Recombinant Human Protein: BAIAP2 

    3 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737 cytoplasm TAS10343108
    GO:0005886 plasma membrane TAS10343108
    GO:0042995 cell projection IEA--
    About this table

    Antibodies for BAIAP2: 
    Browse Antibodies Central at Invitrogen
    Millipore Mono- and Polyclonal Antibodies for the study of BAIAP2
    Sigma-Aldrich Antibodies for BAIAP2
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (BAI1 associated protein 2 isoform 3, BAIAP2), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (BAIAP2)
    Novus Biologicals Antibodies for BAIAP2

    Assays for BAIAP2: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    3 InterPro domains/families:
     IPR011511 SH3_2
     IPR001452 SH3_domain
     IPR013606 IRSp53/MIM_homology_IMD


       GeneDecks  BAIAP2 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q9UQB8

    ProtoNet protein and cluster: Q9UQB8

    3 Blocks protein families:
    IPB001452 SH3 domain signature
    IPB011511 Variant SH3
    IPB013606 IRSp53/MIM homology domain


    UniProtKB/Swiss-Prot: BAIP2_HUMAN, Q9UQB8
    Domain: The IMD domain forms a coiled coil. The isolated domain can induce actin bundling and
    filopodia formation. In the absence of G-proteins intramolecular interaction between the IMD and
    the SH3 domain gives rise to an auto-inhibited state of the protein. Interaction of the IMD with
    RAC1 or CDC42 leads to activation
    Domain: The SH3 domain interacts with ATN1, BAI1, WASF1, WASF2, SHANK1, DIAPH1 and ENAH
    Similarity: Contains 1 IMD (IRSp53/MIM homology) domain
    Similarity: Contains 1 SH3 domain

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (BAIAP2)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (BAIAP2)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4): NM_001144888

                  Applied Biosystems Silencer® siRNAs for BAIAP2

                  Sigma-Aldrich siRNA and siRNA Panels for BAIAP2  
                         Sigma-Aldrich shRNA for BAIAP2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for BAIAP2
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 4): NM_001144888
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 4): NM_001144888
                                     untagged cDNA clones in CMV expression vector (see all 4): NM_001144888 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_017451

    UniProtKB/Swiss-Prot: BAIP2_HUMAN, Q9UQB8
    Function: Adapter protein that links membrane-bound small G-proteins to cytoplasmic effector
    proteins. Necessary for CDC42-mediated reorganization of the actin cytoskeleton and for
    RAC1-mediated membrane ruffling. Involved in the regulation of the actin cytoskeleton by WASF
    family members and the Arp2/3 complex. Plays a role in neurite growth. Acts syngeristically with
    ENAH to promote filipodia formation

    Genatlas biochemistry entry for BAIAP2:
    brain specific angiogenesis (BAI1) inhibitor-associated protein 2,expressed in neurons,with two
    isoforms,long expressed in brain,short in other tissue,MAGUK (membrane-associted guanylase kinase
    homolog) family,homolog of hamster IRSP53

    3 MGI mutant phenotypes (inferred from 1 allele(MGI details for Baiap2):

    behavior/neurologicallife span-post-weaning/agingnervous system

    3 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008022 protein C-terminus binding TAS10343108
    GO:0008093 cytoskeletal adaptor activity TAS10343108
    GO:0017124 SH3 domain binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    1 Invitrogen iPath™ Online BioAtlas - Pathway for BAIAP2 (Maps provided by GeneGo):
     RAC1 in cellular process

       GeneDecks  BAIAP2 for the pathways selected above  
    About GeneDecksing

    1 Millipore Pathway for BAIAP2
     G-protein signaling RAC1 in cellular process

       GeneDecks  BAIAP2 for the pathways selected above  
    About GeneDecksing

    3 Sigma-Aldrich "Your Favorite Gene" Pathways for  BAIAP2  (Your Favorite Gene powered by Ingenuity) 
     Regulation of Actin-based Motility by Rho
     Axonal Guidance Signaling
     Actin Cytoskeleton Signaling

       GeneDecks  BAIAP2 for the pathways selected above  
    About GeneDecksing

    2 Kegg Pathways  (Kegg details for BAIAP2):
     hsa04520 Adherens junction
     hsa04810 Regulation of actin cytoskeleton

       GeneDecks  BAIAP2 for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  BAIAP2 


    5/40 Interacting proteins for BAIAP2 (Q9UQB81, 2 ENSP000003163383) via UniProtKB, MINT, and/or STRING (see all 40 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    WASF2Q9Y6W52, ENSP000003631313MINT-15179 MINT-15180 MINT-15178 STRING (score=.999)
    ATN1P542592, ENSP000003490763MINT-2868323 MINT-50907 MINT-50909 STRING (score=.998)
    ABI1Q8IZP01, ENSP000003475553EBI-525456, EBI-375446 STRING (score=.936)
    EPS8Q129291, 2, ENSP000002811723EBI-525456, EBI-375576 MINT-68438 EBI-525456, EBI-375576 MINT-68438 STRING (score=.991)
    PBX2P404251, 2EBI-525456, EBI-348489 MINT-62572 MINT-62670 MINT-62746 EBI-525456, EBI-348489 MINT-62572 MINT-62670 MINT-62746
    About this table

    4 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007165 signal transduction IEA--
    GO:0007409 axonogenesis TAS10343108
    GO:0008286 insulin receptor signaling pathway TAS10343108
    GO:0046847 filopodium formation IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for BAIAP2
    1 Novoseek chemical compound relationship for BAIAP2 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    tyrosine 46.49 20 18417251 (7), 11514062 (1), 15635447 (1), 12884081 (1) (see all 8)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (BAIAP2)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (BAIAP2)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4): NM_001144888

                  Sigma-Aldrich siRNA and siRNA Panels for BAIAP2  
                         Sigma-Aldrich shRNA for BAIAP2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_006340  NM_017450  NM_017451  

    REFSEQ mRNAs for BAIAP2 gene (4 alternative transcripts): 

    NM_001144888.1   NM_006340.2   NM_017450.2   NM_017451.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_006340  NM_017450  NM_017451  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 4): NM_001144888
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 4): NM_001144888
                                     untagged cDNA clones in CMV expression vector (see all 4): NM_001144888 

    Additional cDNA sequence: 

    AB015019.1 AB015020.1 AB017119.1 AB017120.1 AK023688.1 AK056888.1 AK127291.1 AK222670.1 
    AK225612.1 AK297644.1 AK298629.1 AK301436.1 BC002495.2 BC014020.2 BC032559.1 U70669.1 

    24/30 DOTS entries (see all 30 ):

    DT.100885089  DT.106708  DT.92444973  DT.100885084  DT.75168840  DT.95226934  DT.100885080  DT.443448 
    DT.95226944  DT.75172568  DT.120937425  DT.92444964  DT.95226962  DT.100697561  DT.40246617  DT.97759993 
    DT.100803282  DT.120937354  DT.95132854  DT.120937357  DT.120937385  DT.40212091  DT.442429  DT.75140322 

    24/341 AceView cDNA sequences (see all 341 ):

    BG060086 AW299831 AA349114 AI459980 CB111778 BM928074 BQ651827 BM474938 
    BQ432153 U70669 BQ710494 BE252378 AI611036 BF446922 BQ652839 BC032559 
    AI093313 BQ941292 AL556018 Z41362 BI824231 BQ428473 BM848150 BQ227723 

    highest scoring ESTs for BAIAP2:

    AB015019 AB015020 AA236944 AA349114 AA513463 AA631876 AA644152 AA854934 AA860146 AA923249 

    Unigene Cluster for BAIAP2:

    BAI1-associated protein 2
    Hs.128316  [show with all ESTs]
    Unigene Representative Sequence: AK127291


    GeneLoc Exon Structure

    5/23 Alternative Splicing Database (ASD) splice patterns (SP) for BAIAP2 (see all 23 )

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b · 14c ^ 15a · 15b · 15c ^ 16 ^ 17 ^ 18 ^ 19a ·
    SP1:              -     -     -           -     -     -     -           -     -     -           -     -                                   -     -               
    SP2:                    -     -           -     -     -     -           -     -     -           -     -           -                       -     -               
    SP3:              -     -     -           -     -     -     -           -     -     -           -     -                                   -     -               
    SP4:              -     -     -           -     -     -     -           -     -     -           -     -                                   -     -               
    SP5:                                                                                                                                      -     -               

    ExUns: 19b · 19c ^ 20a · 20b ^ 21a · 21b ^ 22a · 22b ^ 23 ^ 24a · 24b ^ 25 ^ 26a · 26b
    SP1:                                      -                       -                     
    SP2:                                      -                                             
    SP3:                                      -                                             
    SP4:                                      -                                             
    SP5:                                      -                       -                     

    About this scheme

    ECgene alternative splicing isoforms for BAIAP2

    4 Ensembl transcripts including schematic representations:
    ENST00000321300  ENST00000392411  ENST00000321238  ENST00000321280  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    BAIAP2 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for BAIAP2

    1 / 2 / 3

    10 probe-sets matching BAIAP2 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    37761_at2, 3 U95-A 1 1.00 1.00 0.93 0.87 AB015020 0.80 1.00 0.91 1
    37760_at2, 3 U95-A 1 1.00 1.00 0.65 1.15 AB015019 0.80 1.00 0.91 1

    209502_s_at2, 3 U133-A 1 1.00 1.00 -- -- BC002495 0.60 1.00 0.82 1

    207832_at2, 3 U133-A 1 1.00 1.00 -- -- NM_017451 0.40 0.67 0.55 1

    205293_x_at2, 3 U133-A 1 1.00 1.00 -- -- AB017120 0.60 1.00 0.82 1

    205294_at2, 3 U133-A 1 1.00 1.00 -- -- NM_017450 0.60 1.00 0.82 1

    209502_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    207832_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    205293_x_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    205294_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  BAIAP2 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: GAGCCTTGGG

    SOURCE GeneReport for Unigene cluster: Hs.128316

    Expression variation in blood from EXPOLDB for BAIAP2

    UniProtKB/Swiss-Prot: BAIP2_HUMAN, Q9UQB8
    Tissue specificity: Isoform 1 and isoform 4 are expressed almost exclusively in brain. Isoform 4 is
    barely detectable in placenta, prostate and testis. A short isoform is ubiquitous, with the
    highest expression in liver, prostate, testis and placenta

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for BAIAP2 gene from 5/8 species (see all 8 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    BAIAP21   -- BAI1-associated protein 2 89.2(n)
    95.14(a)
    403473  XM_533131.2  XP_533131.2 
    chimpanzee
    (Pan troglodytes)
    BAIAP21   -- BAI1-associated protein 2 94.9(n)
    93.62(a)
    454951  XM_511730.2  XP_511730.2 
    cow
    (Bos taurus)
    BAIAP21   -- BAI1-associated protein 2 90.28(n)
    94.13(a)
    507837  NM_001017937.1  NP_001017937.1 
    rat
    (Rattus norvegicus)
    Baiap21   -- BAI1-associated protein 2 87.61(n)
    95.69(a)
    117542  NM_057196.1  NP_476544.1 
    mouse
    (Mus musculus)
    Baiap21, 5 115
    brain-specific angiogenesis inhibitor 1-associated more1, 5 87.9(n)1
    97.03(a)1
    1081001  NM_001037754.21  NP_001032843.11 
     AA7969985  AB1051965  (see all 26)
    About this table        Species with no ortholog for BAIAP2

    ENSEMBL Gene Tree for BAIAP2
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for BAIAP2 gene
    BAIAP2L22  BAIAP2L12  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/571 NCBI SNPs in BAIAP2 are shown (see all 571 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 194)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 17 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs111507641,2
    A,C,F,H76621670(+) CCAGGA/CGAGCA 3 -- ng514Minor allele frequency- C:0.31EU EA WA 412
    rs116641,2
    A,C,F,H76697457(-) GAAAAC/TGGACG 3 -- int1 ut31 ese314Minor allele frequency- T:0.32MN EA NA EU WA 1404
    --
    rs40725871,2
    A,C,F76698943(-) ACGCAC/TGCCGG 3 -- int1 ng314Minor allele frequency- T:0.16EA NA 214
    --
    rs40725891,2
    A,C76699060(-) GTGAGC/TGACTG 3 -- int1 ng310--------
    --
    rs40725881,2
    A,C76698667(-) CCTTGA/CGCTCT 3 -- int1 ut31 ese30--------
    --
    rs39351901,2
    A,C76698962(-) CGGGGC/TCCCCA 3 -- int1 ng310--------
    rs124505541,2
    C76622667(+) TCCAAA/GATCCT 3 -- ng510--------
    rs11275081,2
    F76698487(+) TGAGTG/TCAGGG 3 -- int1 ut31 ese31Minor allele frequency- T:0.18MN 184
    rs129443441,2
    F76704405(+) GGGCCG/AGGCAG 2 -- int1 ut31 ese34Minor allele frequency- A:0.13NA EA 362
    rs124495151,2
    C76705362(+) TTCCAC/TCCTGG 1 -- ut31 ese30--------
    About this table

    HapMap Linkage Disequilibrium images for BAIAP2 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 605475

    3 Novoseek disease relationships for BAIAP2 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    drpla 82.96 11 10222779 (3), 10332026 (3), 11514062 (2), 12884081 (1)
    wiskott-aldrich syndrome 72.65 4 15673667 (1), 14752106 (1)
    neurodegenerative diseases 17.08 1 12884081 (1)
    About this table

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/52 PubMed articles for BAIAP2 gene (see all 52 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 10458 HGNC: 947 AceView: BAIAP2 Ensembl:ENSG00000175866 euGenes: HUgn10458
    ECgene: BAIAP2 H-InvDB: BAIAP2
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



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