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BAGE Gene

protein-coding   GIFtS: 32
GCID: GC21U900396

B Melanoma Antigen

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
B Melanoma Antigen1 2 3     Cancer/Testis Antigen Family 21
Antigen MZ2-BA2 3     Member 11
Cancer/Testis Antigen 2.12 3     B Melanoma Antigen 12
BAGE12 3     Cancer/Testis Antigen Family 2, Member 12
CT2.12 3     

External Ids:    HGNC: 9421   Entrez Gene: 5742   OMIM: 6051675   UniProtKB: Q130723   

Export aliases for BAGE gene to outside databases

Previous GC identifers: GC21M007820 GC21M010080 GC21M010047 GC07M151408 GC21M010079 GC21M011000


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for BAGE Gene:
This gene encodes a tumor antigen recognized by autologous cytolytic lymphocytes (CTL). (provided by RefSeq, Jul
2008)

GeneCards Summary for BAGE Gene:
BAGE (B melanoma antigen) is a protein-coding gene. Diseases associated with BAGE include testicular cancer, and bladder carcinoma.

UniProtKB/Swiss-Prot: BAGE1_HUMAN, Q13072
Function: Unknown. Antigen recognized on a melanoma by autologous cytolytic T-lymphocytes




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for BAGE
         Other transcription factors

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   Search Chromatin IP Primers for BAGE

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat BAGE


Genomic Location:
Chromosome:21   

Entrez Gene cytogenetic band: 21p11.1   HGNC cytogenetic band: 21p11.1

GeneLoc information about chromosome 21        


(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: BAGE1_HUMAN, Q13072 (See protein sequence)
Recommended Name: B melanoma antigen 1 precursor  
Size: 43 amino acids; 4810 Da
Miscellaneous: The ancestral BAGE gene was generated by juxtacentromeric reshuffling of the KMT2C/MLL3 gene. The
BAGE family was expanded by juxtacentromeric movement and/or acrocentric exchanges. BAGE family is composed of
expressed genes that map to the juxtacentromeric regions of chromosomes 13 and 21 and of unexpressed gene
fragments that scattered in the juxtacentromeric regions of several chromosomes, including chromosomes 9, 13, 18
and 21
Secondary accessions: A4IF47
Alternative splicing: 1 isoform:  Q13072-1   

Explore the universe of human proteins at neXtProt for BAGE: NX_Q13072

Explore proteomics data for BAGE at MOPED


See BAGE Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001178.1  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR012530 BAGE

Graphical View of Domain Structure for InterPro Entry Q13072

ProtoNet protein and cluster: Q13072

1 Blocks protein domain: IPB012530 B melanoma antigen

UniProtKB/Swiss-Prot: BAGE1_HUMAN, Q13072
Similarity: Belongs to the BAGE family


BAGE for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: BAGE1_HUMAN, Q13072
Function: Unknown. Antigen recognized on a melanoma by autologous cytolytic T-lymphocytes

Animal Models:

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
BAGE1_HUMAN, Q13072: Secreted (Potential)

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005576extracellular region IEA--

BAGE for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for BAGE
Interactions:

    Search GeneGlobe Interaction Network for BAGE

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for BAGE (BAGE1)

1 Novoseek inferred chemical compound relationship for BAGE gene    About this table
Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
5-aza-2'deoxycytidine 57.8 2 16734221 (1)



BAGE for compounds           About GeneDecksing



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for BAGE gene: 
NM_001187.1  

Unigene Clusters for BAGE:

B melanoma antigen
Hs.545789  [show with all ESTs], Hs.571595 , Hs.624543
Unigene Representative Sequences: AF527550, AF527554, AF527552
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Additional mRNA sequence: AF527552.1 

12 DOTS entries:

DT.91658794  DT.100696946  DT.91970370  DT.100700673  DT.100700674  DT.106361  DT.97794642  DT.121137683 
DT.91762451  DT.121049448  DT.121137656  DT.92338660 

Selected AceView cDNA sequences (see all 366):

AW864964 AI144389 AA904721 BQ218185 AA595504 AL832387 AA629736 CA776966 
BX952086 AI468635 BG059617 AF264750 AA599219 AI640514 AW999286 AI636190 
AA553507 AB040939 BM910422 AW452981 BQ890802 AI739379 AL698915 AK025553 

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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BAGE expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: AAAACAAATT
BAGE Expression
About this image

BAGE Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

BAGE Protein Expression

SOURCE GeneReport for Unigene clusters: Hs.545789 Hs.571595 Hs.624543

UniProtKB/Swiss-Prot: BAGE1_HUMAN, Q13072
Tissue specificity: Not expressed in normal tissues, except in testis. Expressed with significant proportion in
melanomas, but also in tumors of various histological origins, such as bladder carcinomas, head and neck squamous
cell carcinomas, lung and breast carcinomas. Not expressed in renal, colorectal and prostatic carcinomas,
leukemias and lymphomas. More frequently expressed in metastatic melanomas than in primary melanomas

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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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  --

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for BAGE gene
4 SIMAP similar genes for BAGE using alignment to 2 protein entries:     BAGE1_HUMAN (see all proteins):
BAGE5    BAGE4    BAGE2    BAGE3

BAGE for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Structural Variations
     Database of Genomic Variants (DGV) Selected variations for BAGE (see all 35):    About this table    
Variant IDTypeSubtypePubMed ID
esv2563009CNV Deletion19546169
dgv73n16CNV Deletion17901297
esv2661615CNV Deletion23128226
nsv436329CNV Deletion17901297
esv2474693CNV Deletion19546169
esv2675165CNV Deletion23128226
esv999403CNV Deletion20482838
nsv435743CNV Deletion17901297
esv1002199CNV Deletion20482838
esv1000174CNV Deletion20482838

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 605167    OMIM disorders: --

19 diseases for BAGE:    
About MalaCards
testicular cancer    bladder carcinoma    b-cell chronic lymphocytic leukemia    chronic lymphocytic leukemia
esophageal squamous cell carcinoma    melanoma    hepatocellular carcinoma    peritonitis
rhabdomyosarcoma    esophagitis    squamous cell carcinoma    liver disease
ovarian cancer    myeloma    sarcoma    leukemia
breast cancer    adenocarcinoma    prostatitis


BAGE for disorders           About GeneDecksing

10 Novoseek inferred disease relationships for BAGE gene    About this table

Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
melanoma 66.9 25 12461691 (3), 7895173 (2), 9650552 (2), 12676563 (1) (see all 12)
testicular cancer 51.3 2 9560255 (1), 12461691 (1)
bladder carcinoma 41.6 1 7895173 (1)
tumors 38.8 24 11391626 (3), 15704127 (2), 9209667 (2), 9434763 (2) (see all 14)
lung carcinoma 32.9 2 12461691 (1)
cancer 22 9 15704127 (3), 11391626 (2), 9740504 (1), 18541613 (1)
carcinoma 19.5 4 7895173 (1), 9816341 (1), 16475205 (1), 18541613 (1)
carcinoma squamous cell 16.1 4 11346870 (2), 7895173 (1), 16475205 (1)
hepatocellular carcinoma 6.3 2 10782910 (1), 14607688 (1)
metastasis 0 2 9650552 (2)


Export disorders for BAGE gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for BAGE gene, integrated from 10 sources (see all 34):
(articles sorted by number of sources associating them with BAGE)
    Utopia: connect your pdf to the dynamic
world of online information

  1. BAGE: a new gene encoding an antigen recognized on human melanomas by cytolytic T lymphocytes. (PubMed id 7895173)1, 2, 3, 9 Boel P.... van der Bruggen P. (Immunity 1995)
  2. New BAGE (B melanoma antigen) genes mapping to the juxtacentromeric regions of human chromosomes 13 and 21 have a cancer/testis expression profile. (PubMed id 12461691)1, 2, 9 Ruault M....De Sario A. (Eur. J. Hum. Genet. 2002)
  3. Expression of tumor-specific antigen MAGE, GAGE and BAGE in ovarian cancer tissues and cell lines. (PubMed id 20423514)1, 9 Zhang S....Yu Y. (BMC Cancer 2010)
  4. BAGE hypomethylation, a new epigenetic biomarker for colon cancer detection. (PubMed id 18541613)1, 9 Grunau C....De Sario A. (amp 2008)
  5. Frequent DNA hypomethylation of human juxtacentromeric BAGE loci in cancer. (PubMed id 15704127)1, 9 Grunau C....De Sario A. (amp 2005)
  6. BAGE genes generated by juxtacentromeric reshuffling in the hominidae lineage are under selective pressure. (PubMed id 12676563)1, 9 Ruault M.... De Sario A. (Genomics 2003)
  7. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  8. mRNA detection of tumor-rejection genes BAGE, GAGE, and MAGE in peritoneal fluid from patients with ovarian carcinoma as a potential diagnostic tool. (PubMed id 12115308)1 Hofmann M. and Ruschenburg I. (Cancer 2002)
  9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  10. MAGE, BAGE and GAGE gene expression in human rhabdomyosarcomas. (PubMed id 11391626)9 Dalerba P....Zanovello P. (Int. J. Cancer 2001)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Disorders
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 574 HGNC: 942 AceView: MLL3 euGenes: HUgn574 ECgene: BAGE
H-InvDB: BAGE

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for BAGE Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for BAGE Genetics and Cytogenetics in Oncology and Haematology

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for BAGE gene:
Search GeneIP for patents involving BAGE

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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The GeneCards human gene database gene index: 1 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes      Disease genes      BAGE gene at Home site.
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