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Aliases for BACH1-IT2 Gene

Subcategory (RNA class) for BACH1-IT2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BACH1-IT2 Gene

  • BACH1 Intronic Transcript 2 2 3 5
  • BACH1 Intronic Transcript 2 (Non-Protein Coding) 2

External Ids for BACH1-IT2 Gene

Previous GeneCards Identifiers for BACH1-IT2 Gene

  • GC00U933585
  • GC21P030745

Summaries for BACH1-IT2 Gene

GeneCards Summary for BACH1-IT2 Gene

BACH1-IT2 (BACH1 Intronic Transcript 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BACH1-IT2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BACH1-IT2 Gene

Genomics for BACH1-IT2 Gene

Regulatory Elements for BACH1-IT2 Gene

Enhancers for BACH1-IT2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21H029161 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.2 -207.1 -207126 3 RAD21 RFX5 EGR1 ZNF366 FOS EGR2 ZNF654 ZNF362 CEBPB ZEB2 BACH1 ENSG00000224649 MAP3K7CL CCT8 BACH1-IT2 BACH1-AS1 LINC00189 USP16 LOC105372767 GC21M029140
GH21H029346 1.4 Ensembl ENCODE dbSUPER 12.4 -20.9 -20936 6 FOXA2 TBL1XR1 NFIB THRB RAD21 SCRT2 ZNF350 ZNF143 ZNF207 ATF7 RPL23P2 LTN1 ENSG00000224649 ENSG00000231125 USP16 BACH1-IT2 BACH1-AS1 RPL12P9 LINC00189 MAP3K7CL
GH21H029021 1.1 ENCODE 10.1 -346.3 -346273 4 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 CCT8 USP16 BACH1 RWDD2B N6AMT1 LTN1 RPL12P9 RPL23P2 BACH1-IT1 LINC01697
GH21H029372 1 ENCODE dbSUPER 0.7 +2.0 2039 0 ZSCAN5A CTCF PKNOX1 ARNT ZSCAN4 PYGO2 ZNF2 RAD21 CC2D1A FOXK2 BACH1-IT2 GC21P029375
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BACH1-IT2 on UCSC Golden Path with GeneCards custom track

Genomic Location for BACH1-IT2 Gene

Chromosome:
21
Start:
29,370,497 bp from pter
End:
29,373,980 bp from pter
Size:
3,484 bases
Orientation:
Plus strand

Genomic View for BACH1-IT2 Gene

Genes around BACH1-IT2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BACH1-IT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BACH1-IT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BACH1-IT2 Gene

Proteins for BACH1-IT2 Gene

Post-translational modifications for BACH1-IT2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BACH1-IT2 Gene

Domains & Families for BACH1-IT2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BACH1-IT2 Gene

Function for BACH1-IT2 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for BACH1-IT2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BACH1-IT2 Gene

Localization for BACH1-IT2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BACH1-IT2 Gene

Pathways & Interactions for BACH1-IT2 Gene

SuperPathways for BACH1-IT2 Gene

No Data Available

Interacting Proteins for BACH1-IT2 Gene

Gene Ontology (GO) - Biological Process for BACH1-IT2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BACH1-IT2 Gene

Drugs & Compounds for BACH1-IT2 Gene

No Compound Related Data Available

Transcripts for BACH1-IT2 Gene

mRNA/cDNA for BACH1-IT2 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for BACH1-IT2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for BACH1-IT2 Gene

No ASD Table

Relevant External Links for BACH1-IT2 Gene

GeneLoc Exon Structure for
BACH1-IT2
ECgene alternative splicing isoforms for
BACH1-IT2

Expression for BACH1-IT2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BACH1-IT2 Gene

mRNA differential expression in normal tissues according to GTEx for BACH1-IT2 Gene

This gene is overexpressed in Whole Blood (x7.3), Muscle - Skeletal (x6.9), and Testis (x5.7).
genes like me logo Genes that share expression patterns with BACH1-IT2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BACH1-IT2 Gene

Orthologs for BACH1-IT2 Gene

Evolution for BACH1-IT2 Gene

ENSEMBL:
Gene Tree for BACH1-IT2 (if available)
TreeFam:
Gene Tree for BACH1-IT2 (if available)

No data available for Orthologs for BACH1-IT2 Gene

Paralogs for BACH1-IT2 Gene

No data available for Paralogs for BACH1-IT2 Gene

Variants for BACH1-IT2 Gene

Sequence variations from dbSNP and Humsavar for BACH1-IT2 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1000390550 -- 29,373,835(+) GTTGG(C/T)ATTGA nc-transcript-variant
rs1001750695 -- 29,370,531(+) GCCAG(A/C)CCTTC upstream-variant-2KB
rs1003819058 -- 29,371,975(+) CTTGT(A/C/G)AAAAC upstream-variant-2KB
rs1004171424 -- 29,371,675(+) CATTT(G/T)CTGAA upstream-variant-2KB
rs1005499050 -- 29,373,686(+) GCAGT(A/G)ACAGA nc-transcript-variant

Relevant External Links for BACH1-IT2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BACH1-IT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BACH1-IT2 Gene

Disorders for BACH1-IT2 Gene

Relevant External Links for BACH1-IT2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BACH1-IT2

No disorders were found for BACH1-IT2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BACH1-IT2 Gene

Publications for BACH1-IT2 Gene

No publications were found for BACH1-IT2 Gene.

Products for BACH1-IT2 Gene

Sources for BACH1-IT2 Gene

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