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Aliases for BACH1-IT2 Gene

Subcategory (RNA class) for BACH1-IT2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BACH1-IT2 Gene

  • BACH1 Intronic Transcript 2 2 3 5
  • BACH1 Intronic Transcript 2 (Non-Protein Coding) 2

External Ids for BACH1-IT2 Gene

Previous GeneCards Identifiers for BACH1-IT2 Gene

  • GC00U933585
  • GC21P030745

Summaries for BACH1-IT2 Gene

GeneCards Summary for BACH1-IT2 Gene

BACH1-IT2 (BACH1 Intronic Transcript 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BACH1-IT2 Gene

Genomics for BACH1-IT2 Gene

Regulatory Elements for BACH1-IT2 Gene

Enhancers for BACH1-IT2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F029346 1 Ensembl ENCODE 12.4 -20.9 -20947 6.3 PKNOX1 TBL1XR1 WRNIP1 THRB RAD21 SCRT2 ZNF207 ZNF362 ZNF680 ZNF654 ENSG00000224649 BACH1-IT2 BACH1-AS1 LINC00189 MAP3K7CL LTN1 BACH1-IT1 GC21P029329 GC21P029330
GH21F029162 1.4 FANTOM5 Ensembl ENCODE 12.2 -207.1 -207126 3.4 RAD21 RFX5 ZNF366 FOS EGR2 ZNF362 ZNF654 CEBPB REST ZEB2 BACH1 ENSG00000224649 MAP3K7CL CCT8 BACH1-IT2 BACH1-AS1 LINC00189 USP16 LOC105372767 GC21M029140
GH21F029161 0.5 Ensembl 12.2 -209.3 -209297 0.4 ZNF121 BACH1-AS1 BACH1-IT2 ENSG00000224649 CCT8 LOC105372767 GC21M029140 ENSG00000201984
GH21F029159 0.6 Ensembl 12.2 -210.4 -210397 1.4 ENSG00000224649 MAP3K7CL BACH1-AS1 BACH1-IT2 CCT8 BACH1 LOC105372767 GC21M029140 ENSG00000201984
GH21F029021 0.7 ENCODE 10.1 -346.3 -346273 4.7 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 CCT8 RPL12P9 LTN1 RWDD2B BACH1-IT1 LINC01697 BACH1-IT2 USP16
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around BACH1-IT2 on UCSC Golden Path with GeneCards custom track

Genomic Location for BACH1-IT2 Gene

Chromosome:
21
Start:
29,370,497 bp from pter
End:
29,373,980 bp from pter
Size:
3,484 bases
Orientation:
Plus strand

Genomic View for BACH1-IT2 Gene

Genes around BACH1-IT2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BACH1-IT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BACH1-IT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BACH1-IT2 Gene

Proteins for BACH1-IT2 Gene

Post-translational modifications for BACH1-IT2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BACH1-IT2 Gene

Domains & Families for BACH1-IT2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BACH1-IT2 Gene

Function for BACH1-IT2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BACH1-IT2 Gene

Localization for BACH1-IT2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BACH1-IT2 Gene

Pathways & Interactions for BACH1-IT2 Gene

SuperPathways for BACH1-IT2 Gene

No Data Available

Interacting Proteins for BACH1-IT2 Gene

Gene Ontology (GO) - Biological Process for BACH1-IT2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BACH1-IT2 Gene

Transcripts for BACH1-IT2 Gene

mRNA/cDNA for BACH1-IT2 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BACH1-IT2 Gene

No ASD Table

Relevant External Links for BACH1-IT2 Gene

GeneLoc Exon Structure for
BACH1-IT2
ECgene alternative splicing isoforms for
BACH1-IT2

Expression for BACH1-IT2 Gene

mRNA expression in normal human tissues for BACH1-IT2 Gene

mRNA differential expression in normal tissues according to GTEx for BACH1-IT2 Gene

This gene is overexpressed in Whole Blood (x7.3), Muscle - Skeletal (x6.9), and Testis (x5.7).
genes like me logo Genes that share expression patterns with BACH1-IT2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for BACH1-IT2 Gene

Orthologs for BACH1-IT2 Gene

Evolution for BACH1-IT2 Gene

ENSEMBL:
Gene Tree for BACH1-IT2 (if available)
TreeFam:
Gene Tree for BACH1-IT2 (if available)

No data available for Orthologs for BACH1-IT2 Gene

Paralogs for BACH1-IT2 Gene

No data available for Paralogs for BACH1-IT2 Gene

Variants for BACH1-IT2 Gene

Sequence variations from dbSNP and Humsavar for BACH1-IT2 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs112061395 -- 29,374,129(+) GAGAA(C/T)AGTAT downstream-variant-500B
rs11327125 -- 29,374,344(+) TGATG(-/A)AAAAA downstream-variant-500B
rs114246854 -- 29,371,362(+) AACTC(A/G)AACAA upstream-variant-2KB
rs114711291 -- 29,373,252(+) GGGAC(A/G)CCAGG nc-transcript-variant
rs115732019 -- 29,373,920(+) TGATA(A/G)AAACA nc-transcript-variant

Relevant External Links for BACH1-IT2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BACH1-IT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BACH1-IT2 Gene

Disorders for BACH1-IT2 Gene

Relevant External Links for BACH1-IT2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BACH1-IT2

No disorders were found for BACH1-IT2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BACH1-IT2 Gene

Publications for BACH1-IT2 Gene

No publications were found for BACH1-IT2 Gene.

Products for BACH1-IT2 Gene

Sources for BACH1-IT2 Gene

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