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Aliases for BAALC-AS1 Gene

Subcategory (RNA class) for BAALC-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BAALC-AS1 Gene

  • BAALC Antisense RNA 1 2 3 5

External Ids for BAALC-AS1 Gene

Summaries for BAALC-AS1 Gene

GeneCards Summary for BAALC-AS1 Gene

BAALC-AS1 (BAALC Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BAALC-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BAALC-AS1 Gene

Genomics for BAALC-AS1 Gene

Regulatory Elements for BAALC-AS1 Gene

Enhancers for BAALC-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H103346 1.4 FANTOM5 Ensembl ENCODE dbSUPER 15 -49.9 -49939 3 JUN HLF ZIC2 JUND POLR2A SCRT2 GLIS1 FOS MAFK FZD6 CTHRC1 BAALC-AS1 RNU6-1011P LINC01181 DCAF13 ENSG00000266289 ATP6V1C1 AZIN1 SLC25A32
GH08H103371 1.5 Ensembl ENCODE dbSUPER 10.7 -73.7 -73689 2 PKNOX1 ARID4B SIN3A DMAP1 ZBTB7B ZNF143 FOS SP3 ZNF592 MIER3 DCAF13 FZD6 BAALC-AS1 LINC01181 CTHRC1 SLC25A32 ENSG00000266289
GH08H103268 0.9 Ensembl ENCODE dbSUPER 11.5 +29.4 29433 2 POLR2A MAFK FZD6 BAALC-AS1 CTHRC1 BAALC-AS2 ENSG00000253851 LINC01181 BAALC PIR51808 LOC105369147
GH08H103337 0.7 ENCODE dbSUPER 11 -39.2 -39176 0 PKNOX1 GLIS1 FEZF1 CTHRC1 RNU6-1011P FZD6 BAALC-AS1 GC08P103328 GC08P103357
GH08H103512 0.7 ENCODE 10.1 -213.5 -213456 0 CTCF ZNF654 RFX1 TRIM22 CEBPB REST CEBPG RAD21 RFX5 ZNF217 SLC25A32 DCAF13 LINC01181 BAALC-AS1 FZD6 LOC105375690 ENSG00000255105
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BAALC-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for BAALC-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000228337 -328 1801 TBP NFRKB SIN3A ZSCAN9 ZBTB7B BRCA1 SCRT2 SMARCA5 ZNF680 HCFC1

Genomic Location for BAALC-AS1 Gene

Chromosome:
8
Start:
103,156,990 bp from pter
End:
103,298,772 bp from pter
Size:
141,783 bases
Orientation:
Minus strand

Genomic View for BAALC-AS1 Gene

Genes around BAALC-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BAALC-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BAALC-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BAALC-AS1 Gene

Proteins for BAALC-AS1 Gene

Post-translational modifications for BAALC-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BAALC-AS1 Gene

Domains & Families for BAALC-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BAALC-AS1 Gene

Function for BAALC-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BAALC-AS1 Gene

Localization for BAALC-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BAALC-AS1 Gene

Pathways & Interactions for BAALC-AS1 Gene

SuperPathways for BAALC-AS1 Gene

No Data Available

Interacting Proteins for BAALC-AS1 Gene

Gene Ontology (GO) - Biological Process for BAALC-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BAALC-AS1 Gene

Drugs & Compounds for BAALC-AS1 Gene

No Compound Related Data Available

Transcripts for BAALC-AS1 Gene

mRNA/cDNA for BAALC-AS1 Gene

(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BAALC-AS1 Gene

No ASD Table

Relevant External Links for BAALC-AS1 Gene

GeneLoc Exon Structure for
BAALC-AS1
ECgene alternative splicing isoforms for
BAALC-AS1

Expression for BAALC-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BAALC-AS1 Gene

genes like me logo Genes that share expression patterns with BAALC-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BAALC-AS1 Gene

Orthologs for BAALC-AS1 Gene

Evolution for BAALC-AS1 Gene

ENSEMBL:
Gene Tree for BAALC-AS1 (if available)
TreeFam:
Gene Tree for BAALC-AS1 (if available)

No data available for Orthologs for BAALC-AS1 Gene

Paralogs for BAALC-AS1 Gene

No data available for Paralogs for BAALC-AS1 Gene

Variants for BAALC-AS1 Gene

Sequence variations from dbSNP and Humsavar for BAALC-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000065587 -- 103,167,687(+) TTGGA(G/T)GACAG intron-variant
rs1000460 -- 103,173,517(+) AATAG(A/T)TTTTT intron-variant, upstream-variant-2KB
rs1000461 -- 103,173,983(+) AAGAG(A/G)CTATG intron-variant, upstream-variant-2KB
rs1000608737 -- 103,162,839(+) GAGAC(C/T)CCAGG intron-variant
rs1000702135 -- 103,157,218(+) CAAAA(C/T)AATTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BAALC-AS1 Gene

Variant ID Type Subtype PubMed ID
esv21700 CNV gain 19812545
nsv831413 CNV gain 17160897

Relevant External Links for BAALC-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BAALC-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BAALC-AS1 Gene

Disorders for BAALC-AS1 Gene

Relevant External Links for BAALC-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BAALC-AS1

No disorders were found for BAALC-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BAALC-AS1 Gene

Publications for BAALC-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Identification of genes related to Parkinson's disease using expressed sequence tags. (PMID: 17213182) Kim JM … Kim NS (DNA research : an international journal for rapid publication of reports on genes and genomes 2006) 3 60

Products for BAALC-AS1 Gene

Sources for BAALC-AS1 Gene

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