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B4GALT3 Gene

protein-coding   GIFtS: 60

GC01M159407
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
Beta4Gal-T3 3
EC 2.4.1.- 3
OTTHUMP00000032247 2
OTTHUMP00000032248 2
b4Gal-T3 3
beta4Gal-T3 1, 2
Descriptions
Beta-1,4-GalTase 3 3
UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 3 3
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3 2
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase,
polypeptide 3 2
UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3 3
beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase 3 2
External Ids
HGNC: 9261
Entrez Gene: 87032
UniProtKB: O605123
Ensembl: ENSG000001588507
Search outside databases for aliases for B4GALT3 gene

Previous GC identifers: GC01M158852 GC01M156873 GC01M157918 GC01M158357 GC01M157954

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for B4GALT3:
This gene is one of seven beta-1,4-galactosyltransferase (beta4GalT) genes. They encode type II
membrane-bound glycoproteins that appear to have exclusive specificity for the donor substrate
UDP-galactose; all transfer galactose in a beta1,4 linkage to similar acceptor sugars: GlcNAc,
Glc, and Xyl. Each beta4GalT has a distinct function in the biosynthesis of different
glycoconjugates and saccharide structures. As type II membrane proteins, they have an N-terminal
hydrophobic signal sequence that directs the protein to the Golgi apparatus and which then remains
uncleaved to function as a transmembrane anchor. By sequence similarity, the beta4GalTs form four
groups: beta4GalT1 and beta4GalT2, beta4GalT3 and beta4GalT4, beta4GalT5 and beta4GalT6, and
beta4GalT7. This gene encodes an enzyme that may be mainly involved in the synthesis of the first
N-acetyllactosamine unit of poly-N-acetyllactosamine chains. [provided by RefSeq]

UniProtKB/Swiss-Prot: B4GT3_HUMAN, O60512
Function: Responsible for the synthesis of complex-type N-linked oligosaccharides in many
glycoproteins as well as the carbohydrate moieties of glycolipids

Gene Wiki entry for B4GALT3

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the B4GALT3 gene  

Entrez Gene cytogenetic band: 1q21-q23   Ensembl cytogenetic band:  1q23.3   HGNC cytogenetic band: 1q21-q23

B4GALT3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M159407:     (about GC identifiers)

Start:
159,407,725 bp from pter
End:
159,413,938 bp from pter
Size:
6,214 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000001.9  NT_004487.18  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: B4GT3_HUMAN, O60512 (See protein sequence)
Recommended Name: Beta-1,4-galactosyltransferase 3  
Size: 393 amino acids; 43928 Da
Cofactor: Manganese (By similarity)
Subcellular location: Golgi apparatus, Golgi stack membrane; Single-pass type II membrane protein.
Note=Trans cisternae of Golgi stack
Secondary accessions: O60910 Q9BPZ4 Q9H8T2
Alternative splicing: 2 isoforms:  O60512-1   O60512-2   

REFSEQ proteins: NP_003770.1  

ENSEMBL proteins: 
ENSP00000320965 ENSP00000385694 ENSP00000356977 ENSP00000356976 ENSP00000308551 


Human Recombinant Proteins 
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Recombinant Proteins from Abcam (B4GALT3)
Human Recombinant Proteins from Abnova (B4GALT3)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

4 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005737 cytoplasm IDA18029348
GO:0005794 Golgi apparatus IEA--
GO:0016020 membrane IEA--
GO:0016021 integral to membrane IEA--
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Antibodies for B4GALT3: 
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Sigma-Aldrich Antibodies for B4GALT3
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Antibodies from Abcam (B4GALT3), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (B4GALT3)
Novus Biologicals Antibodies for B4GALT3

Assays for B4GALT3: 
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Browse Kits and Assays available from Millipore
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Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro domain/family:
 IPR003859 Galactosyl_T_2


   GeneDecks  B4GALT3 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry O60512

ProtoNet protein and cluster: O60512

1 Blocks protein family: IPB003859 Metazoa galactosyltransferase

UniProtKB/Swiss-Prot: B4GT3_HUMAN, O60512
Similarity: Belongs to the glycosyltransferase 7 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (B4GALT3)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (B4GALT3)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003779

              Applied Biosystems Silencer® siRNAs for B4GALT3

              Sigma-Aldrich siRNA for B4GALT3  
                     Sigma-Aldrich shRNA for B4GALT3  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for B4GALT3
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003779
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_003779
                                 untagged cDNA clone in CMV expression vector: NM_003779 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_003779

UniProtKB/Swiss-Prot: B4GT3_HUMAN, O60512
Function: Responsible for the synthesis of complex-type N-linked oligosaccharides in many
glycoproteins as well as the carbohydrate moieties of glycolipids
Catalytic activity: UDP-galactose + N-acetyl-beta-D-glucosaminylglycopeptide = UDP +
beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminylglycopeptide
Catalytic activity: UDP-galactose + N-acetyl-D-glucosamine = UDP + N-acetyllactosamine
Biophysicochemical properties: Kinetic parameters: KM=63 uM for GlcNAc-B-S-pNP;
Enzyme Number (IUBMB): EC 2.4.1.- 

Genatlas biochemistry entry for B4GALT3:
UDP galactose

5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0003831 beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity IEA--
GO:0003945 N-acetyllactosamine synthase activity IEA--
GO:0008378 galactosyltransferase activity TAS9405390
GO:0016757 transferase activity, transferring glycosyl groups IEA--
GO:0030145 manganese ion binding IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for  B4GALT3  (Your Favorite Gene powered by Ingenuity) 
 Keratan Sulfate Biosynthesis
 N-Glycan Biosynthesis

   GeneDecks  B4GALT3 for the pathways selected above  
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3 Kegg Pathways  (Kegg details for B4GALT3):
 hsa00510 N-Glycan biosynthesis
 hsa00533 Keratan sulfate biosynthesis
 hsa00601 Glycosphingolipid biosynthesis - lacto and neolacto series

   GeneDecks  B4GALT3 for the pathways selected above  
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UniProtKB/Swiss-Prot: B4GT3_HUMAN, O60512
Pathway: Protein modification; protein glycosylation


5/24 Interacting proteins for B4GALT3 (ENSP000003569773 O605122) via UniProtKB, MINT, and/or STRING (see all 24 )

InteractantInteraction Details
GeneCardExternal ID(s)
SAT1P216732MINT-63557
SURF2Q155272MINT-63176
B3GNT1ENSP000003055953STRING (score=.899)
B3GNT3ENSP000003218743STRING (score=.899)
B3GNT4ENSP000003196363STRING (score=.899)
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1 Gene Ontology (GO) biological process term (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005975 carbohydrate metabolic process IEA--
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for B4GALT3

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (B4GALT3)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (B4GALT3)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003779

              Sigma-Aldrich siRNA for B4GALT3  
                     Sigma-Aldrich shRNA for B4GALT3  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_003779  

REFSEQ mRNAs for B4GALT3 gene: 

NM_003779.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_003779  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003779
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_003779
                                 untagged cDNA clone in CMV expression vector: NM_003779 

Additional cDNA sequence: 

AB024435.1 AF020921.1 AF038661.1 AK023311.1 AK056851.1 AK092493.1 AK094384.1 AK291455.1 
BC000276.1 BC006099.1 BC009985.2 CR592876.1 CR599499.1 CR605946.1 CR607487.1 CR612341.1 
CR614082.1 Y12509.1 

24/28 DOTS entries (see all 28 ):

DT.100844432  DT.100820316  DT.447372  DT.95367558  DT.95367553  DT.95367546  DT.121391037  DT.99929812 
DT.100820308  DT.100820304  DT.100820317  DT.121390996  DT.100820309  DT.91964187  DT.121390989  DT.121391036 
DT.121390999  DT.100820306  DT.100820312  DT.121391039  DT.95367547  DT.100820307  DT.121390946  DT.121391019 

24/389 AceView cDNA sequences (see all 389 ):

BQ918131 CB529148 AA887138 BF448185 BE793405 BM922744 AA479088 BM683525 
AA704450 CR612341 BQ007000 AI582906 BM827492 BX279904 AK056851 BQ270935 
BC009985 BM471281 AI298086 AA721091 AW770538 BQ942399 CR614082 BI768269 

highest scoring ESTs for B4GALT3:

AF038661 AA219689 AA219716 AA234701 AA411386 AA434286 AF020921 AL538395 AL558425 AL602940 

Unigene Cluster for B4GALT3:

UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3
Hs.321231  [show with all ESTs]
Unigene Representative Sequence: AK056851


GeneLoc Exon Structure

5/22 Alternative Splicing Database (ASD) splice patterns (SP) for B4GALT3 (see all 22 )

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b · 10c ^ 11a · 11b · 11c ^ 12a · 12b · 12c ^ 13a · 13b ·
SP1:              -     -     -     -     -     -     -                       -                                                     -                           
SP2:              -     -     -     -     -     -     -                       -                                                                                 
SP3:              -     -     -     -     -     -     -     -                                                                                                   
SP4:              -     -     -     -     -     -     -                       -                                                                                 
SP5:              -     -     -     -     -     -     -                                                                                                         

ExUns: 13c · 13d ^ 14 ^ 15a · 15b ^ 16a · 16b · 16c
SP1:                    -           -               
SP2:                    -                           
SP3:                    -                           
SP4:                    -                           
SP5:                    -                           

About this scheme

ECgene alternative splicing isoforms for B4GALT3

5 Ensembl transcripts including schematic representations:
ENST00000319769  ENST00000407555  ENST00000367998  ENST00000367997  ENST00000310413  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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B4GALT3 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for B4GALT3

1 / 2 / 3

3 probe-sets matching B4GALT3 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

39445_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 AF038661 1.00 1.00 1.00 1

210243_s_at2, 3 U133-A 1 1.00 1.00 -- -- AF038661 1.00 1.00 1.00 1

210243_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
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Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: GAGAGAAGAG

SOURCE GeneReport for Unigene cluster: Hs.321231

Expression variation in blood from EXPOLDB for B4GALT3

UniProtKB/Swiss-Prot: B4GT3_HUMAN, O60512
Tissue specificity: Found in various tissues. Highest expression in placenta, prostate, testis,
ovary, intestine and muscle, and in fetal brain

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for B4GALT3 gene from 5/9 species (see all 9 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
B4GALT31   -- UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, more 92.62(n)
98.22(a)
488650  XM_545767.2  XP_545767.2 
chimpanzee
(Pan troglodytes)
B4GALT31   -- UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, more 99.41(n)
99.75(a)
457451  XM_001173446.1  XP_001173446.1 
cow
(Bos taurus)
B4GALT31   -- UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, more 91.01(n)
95.93(a)
515771  NM_001015609.1  NP_001015609.1 
rat
(Rattus norvegicus)
B4galt31   -- UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, more 89.65(n)
96.69(a)
494342  NM_001009539.1  NP_001009539.1 
mouse
(Mus musculus)
B4galt31, 5 1 (92.60 cM)5
UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, more1, 5 88.63(n)1
96.95(a)1
573701  NM_020579.11  NP_065604.11 
 AA1045625  AF1426715  (see all 17)
About this table        Species with no ortholog for B4GALT3

ENSEMBL Gene Tree for B4GALT3
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for B4GALT3 gene
B4GALT22  B4GALT12  B4GALT42  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/30 NCBI SNPs in B4GALT3 are shown (see all 30 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 34)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 1 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs173925701,2
C,F,H159414395(+) TAAAAA/GGCGAT 1 -- ng31 tfbs37Minor allele frequency- G:0.06NA EU EA WA 552
--
rs46569891,2
C159415301(+) tcaggA/Tgatcc 1 -- ng31 tfbs30--------
rs73684441,2
H159415828(+) TTTTTC/TCCAAA 1 -- ng31 trp34Minor allele frequency- T:0.00EU EA WA 388
rs38136191,2
C,F,H159410425(+) CCAACG/ATTCAA 1 N/N syn1 ese34Minor allele frequency- A:0.06EU EA WA 418
rs38136201,2
C,F,H159411629(+) GACACC/TGACAC 1 S/S syn114Minor allele frequency- T:0.06EA MN NA EU WA 2536
rs115795141,2
A,C,F,H159409936(+) TAGTGC/TTGAAG 1 -- int110Minor allele frequency- T:0.49EA NA EU WA 818
--
rs112655611,2
A,C159410593(+) aaggcA/Gggcag 1 -- int10--------
rs38136211,2
F,H159411749(+) GCTTAG/ATTCTC 1 -- int15Minor allele frequency- A:0.02EA EU WA 1910
rs124032821,2
C,H159409873(+) TGGGTA/GTCCTA 1 -- int14Minor allele frequency- G:0.00EU EA WA 414
rs120310201,2
H159413459(+) GGGGGT/AGGCGT 1 -- int14Minor allele frequency- A:0.00EU EA WA 420
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HapMap Linkage Disequilibrium images for B4GALT3 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 604014

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/16 PubMed articles for B4GALT3 gene (see all 16 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 8703 HGNC: 926 AceView: B4GALT3 Ensembl:ENSG00000158850 euGenes: HUgn8703
ECgene: B4GALT3 H-InvDB: B4GALT3
(According to HUGE)
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  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
GGDBhttp://riodb.ibase.aist.go.jp/rcmg/ggdb/
Functional Glycomics Gateway - GTasehttp://www.functionalglycomics.org/glycomics/molecule/jsp/glycoEnzyme/viewGlycoEnzyme.jsp?gbpId=gt_hum_438
(Available from WIS Yeda, Salk, Tufts)
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  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for B4GALT3:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



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 Antibodies for B4GALT3

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