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Aliases for B4GALT1-AS1 Gene

Subcategory (RNA class) for B4GALT1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for B4GALT1-AS1 Gene

  • B4GALT1 Antisense RNA 1 2 3 5

External Ids for B4GALT1-AS1 Gene

Summaries for B4GALT1-AS1 Gene

GeneCards Summary for B4GALT1-AS1 Gene

B4GALT1-AS1 (B4GALT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for B4GALT1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for B4GALT1-AS1 Gene

Genomics for B4GALT1-AS1 Gene

GeneHancer (GH) Regulatory Elements for B4GALT1-AS1 Gene

Promoters and enhancers for B4GALT1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I033075 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.1 -90.5 -90475 2.2 HDGF PKNOX1 ARID4B SIN3A DMAP1 YY1 POLR2B E2F8 ZNF207 ZNF143 SMU1 B4GALT1 NOL6 NFX1 ANXA2P2 CHMP5 BAG1 TOPORS B4GALT1-AS1 RNU4ATAC15P
GH09I033133 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.4 -26.8 -26814 12.9 HDGF FOXA2 MLX ZFP64 ARID4B DMAP1 IRF4 ZNF48 ETS1 YY1 B4GALT1 B4GALT1-AS1 RNU4ATAC15P SPINK4 SMU1 BAG1 CHMP5 OSTCP8
GH09I033226 Enhancer 1.4 Ensembl ENCODE dbSUPER 12 +65.0 65043 11 PKNOX1 CLOCK FOXA2 ARID4B NEUROD1 SIN3A ZBTB7B IRF4 BRCA1 ZNF121 NFX1 SMU1 BAG1 ASS1P12 DFFBP1 TCEA1P4 TOPORS ENSG00000228352 CHMP5 NOL6
GH09I033239 Promoter/Enhancer 1.5 EPDnew ENCODE 11 +73.2 73225 1.3 PKNOX1 SMAD1 ATF1 ARNT ARID4B TCF12 ZNF766 GATA2 ATF7 NCOA1 SPINK4 CHMP5 BAG1 SMU1 B4GALT1 B4GALT1-AS1 RNU4ATAC15P NFX1 GC09P033251 GC09M033166
GH09I033202 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.7 +35.8 35779 1.2 EBF1 BATF IRF4 RELA ATF7 BCLAF1 IKZF2 RUNX3 CREM CBFB RNU4ATAC15P B4GALT1 B4GALT1-AS1 SMU1 SPINK4 GC09P033176 GC09M033166 GC09M033167 GC09M033168
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around B4GALT1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for B4GALT1-AS1 Gene

Genomic Locations for B4GALT1-AS1 Gene
chr9:33,166,948-33,179,983
(GRCh38/hg38)
Size:
13,036 bases
Orientation:
Plus strand
chr9:33,166,973-33,179,981
(GRCh37/hg19)

Genomic View for B4GALT1-AS1 Gene

Genes around B4GALT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
B4GALT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for B4GALT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for B4GALT1-AS1 Gene

Proteins for B4GALT1-AS1 Gene

Post-translational modifications for B4GALT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for B4GALT1-AS1 Gene

Domains & Families for B4GALT1-AS1 Gene

Gene Families for B4GALT1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with B4GALT1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for B4GALT1-AS1 Gene

Function for B4GALT1-AS1 Gene

Phenotypes From GWAS Catalog for B4GALT1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for B4GALT1-AS1 Gene

Localization for B4GALT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for B4GALT1-AS1 Gene

Pathways & Interactions for B4GALT1-AS1 Gene

SuperPathways for B4GALT1-AS1 Gene

No Data Available

Interacting Proteins for B4GALT1-AS1 Gene

Gene Ontology (GO) - Biological Process for B4GALT1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for B4GALT1-AS1 Gene

Drugs & Compounds for B4GALT1-AS1 Gene

No Compound Related Data Available

Transcripts for B4GALT1-AS1 Gene

mRNA/cDNA for B4GALT1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for B4GALT1-AS1 Gene

No ASD Table

Relevant External Links for B4GALT1-AS1 Gene

GeneLoc Exon Structure for
B4GALT1-AS1
ECgene alternative splicing isoforms for
B4GALT1-AS1

Expression for B4GALT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for B4GALT1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for B4GALT1-AS1 Gene

This gene is overexpressed in Testis (x7.9).
genes like me logo Genes that share expression patterns with B4GALT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for B4GALT1-AS1 Gene

Orthologs for B4GALT1-AS1 Gene

Evolution for B4GALT1-AS1 Gene

ENSEMBL:
Gene Tree for B4GALT1-AS1 (if available)
TreeFam:
Gene Tree for B4GALT1-AS1 (if available)

No data available for Orthologs for B4GALT1-AS1 Gene

Paralogs for B4GALT1-AS1 Gene

No data available for Paralogs for B4GALT1-AS1 Gene

Variants for B4GALT1-AS1 Gene

Sequence variations from dbSNP and Humsavar for B4GALT1-AS1 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1055678121 uncertain-significance, Congenital disorder of glycosylation 33,167,281(+) G/A/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs150774756 uncertain-significance, Congenital disorder of glycosylation 33,166,778(+) G/A upstream_transcript_variant
rs184789571 uncertain-significance, Congenital disorder of glycosylation 33,167,270(+) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs193154597 uncertain-significance, Congenital disorder of glycosylation 33,167,229(+) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs374769857 uncertain-significance, Congenital disorder of glycosylation 33,167,131(+) C/A/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for B4GALT1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv7515n100 CNV gain 25217958
dgv7516n100 CNV gain 25217958
esv2762813 CNV gain 21179565
nsv509299 CNV insertion 20534489
nsv519369 CNV gain 19592680

Additional Variant Information for B4GALT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
B4GALT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for B4GALT1-AS1 Gene

Disorders for B4GALT1-AS1 Gene

Additional Disease Information for B4GALT1-AS1

No disorders were found for B4GALT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for B4GALT1-AS1 Gene

Publications for B4GALT1-AS1 Gene

  1. Multifaceted roles of 5'-regulatory region of the cancer associated gene B4GALT1 and its comparison with the gene family. (PMID: 26315939) Al-Obaide MA … Srivenugopal KS (International journal of oncology 2015) 2 3 58
  2. Genome-wide association analyses identify 18 new loci associated with serum urate concentrations. (PMID: 23263486) Köttgen A … Gieger C (Nature genetics 2013) 3 58
  3. Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M … Kato S (DNA research : an international journal for rapid publication of reports on genes and genomes 2008) 3 58
  4. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for B4GALT1-AS1 Gene

Sources for B4GALT1-AS1 Gene

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