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Aliases for B4GALT1-AS1 Gene

Subcategory (RNA class) for B4GALT1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for B4GALT1-AS1 Gene

  • B4GALT1 Antisense RNA 1 2 3 5

External Ids for B4GALT1-AS1 Gene

Summaries for B4GALT1-AS1 Gene

GeneCards Summary for B4GALT1-AS1 Gene

B4GALT1-AS1 (B4GALT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for B4GALT1-AS1 Gene

Genomics for B4GALT1-AS1 Gene

Regulatory Elements for B4GALT1-AS1 Gene

Enhancers for B4GALT1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G033133 1.5 Ensembl ENCODE dbSUPER 12.4 -26.8 -26814 12.9 HDGF MLX WRNIP1 ZFP64 ARID4B DMAP1 ZNF48 YY1 FOS SP5 B4GALT1 B4GALT1-AS1 RNU4ATAC15P SPINK4 SMU1 BAG1 CHMP5 OSTCP8
GH09G033226 1.5 Ensembl ENCODE dbSUPER 12 +65.0 65044 11.0 PKNOX1 FOXA2 ARID4B SIN3A BRCA1 ZBTB7B ZNF121 GLIS2 FOS DEK NFX1 BAG1 CHMP5 B4GALT1 B4GALT1-AS1 SMU1 RNU4ATAC15P DFFBP1 SPINK4 GC09P033251
GH09G033202 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.7 +35.8 35780 1.2 CTCF EBF1 RELA POLR2A EED RELB IKZF2 CREM CHD2 MAZ RNU4ATAC15P B4GALT1 B4GALT1-AS1 SMU1 SPINK4 GC09P033176
GH09G033225 1.4 Ensembl ENCODE dbSUPER 12 +58.9 58867 1.0 HDGF PKNOX1 ZNF2 RAD21 RFX5 ZNF335 SIRT6 FOS MIXL1 ZNF654 B4GALT1 B4GALT1-AS1 SMU1 RNU4ATAC15P APTX DNAJA1 SPINK4 GC09P033251
GH09G033127 1.3 Ensembl ENCODE dbSUPER 12.3 -36.5 -36523 4.9 ZSCAN4 WRNIP1 FEZF1 RAD21 RARA YY1 ZNF366 FOS ETV6 ZNF263 B4GALT1 B4GALT1-AS1 RNU4ATAC15P SMU1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around B4GALT1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for B4GALT1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000234353 -748 3201 MLX DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 ZNF610

Genomic Location for B4GALT1-AS1 Gene

Chromosome:
9
Start:
33,166,948 bp from pter
End:
33,179,983 bp from pter
Size:
13,036 bases
Orientation:
Plus strand

Genomic View for B4GALT1-AS1 Gene

Genes around B4GALT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
B4GALT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for B4GALT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for B4GALT1-AS1 Gene

Proteins for B4GALT1-AS1 Gene

Post-translational modifications for B4GALT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for B4GALT1-AS1 Gene

Domains & Families for B4GALT1-AS1 Gene

Gene Families for B4GALT1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with B4GALT1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for B4GALT1-AS1 Gene

Function for B4GALT1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for B4GALT1-AS1 Gene

Localization for B4GALT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for B4GALT1-AS1 Gene

Pathways & Interactions for B4GALT1-AS1 Gene

SuperPathways for B4GALT1-AS1 Gene

No Data Available

Interacting Proteins for B4GALT1-AS1 Gene

Gene Ontology (GO) - Biological Process for B4GALT1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for B4GALT1-AS1 Gene

Drugs & Compounds for B4GALT1-AS1 Gene

No Compound Related Data Available

Transcripts for B4GALT1-AS1 Gene

mRNA/cDNA for B4GALT1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for B4GALT1-AS1 Gene

No ASD Table

Relevant External Links for B4GALT1-AS1 Gene

GeneLoc Exon Structure for
B4GALT1-AS1
ECgene alternative splicing isoforms for
B4GALT1-AS1

Expression for B4GALT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for B4GALT1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for B4GALT1-AS1 Gene

This gene is overexpressed in Testis (x7.9).
genes like me logo Genes that share expression patterns with B4GALT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for B4GALT1-AS1 Gene

Orthologs for B4GALT1-AS1 Gene

Evolution for B4GALT1-AS1 Gene

ENSEMBL:
Gene Tree for B4GALT1-AS1 (if available)
TreeFam:
Gene Tree for B4GALT1-AS1 (if available)

No data available for Orthologs for B4GALT1-AS1 Gene

Paralogs for B4GALT1-AS1 Gene

No data available for Paralogs for B4GALT1-AS1 Gene

Variants for B4GALT1-AS1 Gene

Sequence variations from dbSNP and Humsavar for B4GALT1-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs73472943 Likely benign 33,166,747(+) CGACC(A/C)GAGTC intron-variant, upstream-variant-2KB
rs150774756 Uncertain significance 33,166,778(+) CCTCA(A/G)GGCAG upstream-variant-2KB, reference, missense
rs184789571 Uncertain significance 33,167,270(+) GGGGA(A/G)GGCCC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs193154597 Uncertain significance 33,167,229(+) CCGCG(A/G)GCCGC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs374769857 Uncertain significance 33,167,131(+) GGCAT(C/T)GCGGC intron-variant, upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for B4GALT1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv7515n100 CNV gain 25217958
dgv7516n100 CNV gain 25217958
esv2762813 CNV gain 21179565
nsv509299 CNV insertion 20534489
nsv519369 CNV gain 19592680

Relevant External Links for B4GALT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
B4GALT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for B4GALT1-AS1 Gene

Disorders for B4GALT1-AS1 Gene

Relevant External Links for B4GALT1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
B4GALT1-AS1

No disorders were found for B4GALT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for B4GALT1-AS1 Gene

Publications for B4GALT1-AS1 Gene

  1. Multifaceted roles of 5'-regulatory region of the cancer associated gene B4GALT1 and its comparison with the gene family. (PMID: 26315939) Al-Obaide M.A. … Srivenugopal K.S. (Int. J. Oncol. 2015) 2 3 64
  2. Genome-wide association analyses identify 18 new loci associated with serum urate concentrations. (PMID: 23263486) KAPttgen A. … Gieger C. (Nat. Genet. 2013) 3 64
  3. Fine expression profiling of full-length transcripts using a size- unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M. … Kato S. (DNA Res. 2008) 3 64

Products for B4GALT1-AS1 Gene

Sources for B4GALT1-AS1 Gene

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