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B4GALNT4 Gene

protein-coding GIFtS: 46

GC11P000368

beta-1,4-N-acetyl-galactosaminyl transferase 4
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
Beta4GalNAc-T4 ^³
Beta4GalNAcT4 ^³
EC 2.4.1.244 ^³
FLJ25045 ^¹, ²
NGalNAc-T1 ^¹, ², ³
beta4GalNAc-T4 ^²
betaGT4 ^²

Descriptions
Beta-1,4-N-acetylgalactosaminyltransferase IV ^³
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 ^²
beta 1,4-N-acetylgalactosaminyltransferase-transferase 4 ^²
beta-1,4-N-acetyl-galactosaminyl transferase 4 ^²
beta1,4-N-acetylgalactosaminyltransferases IV ^²

External Ids
HGNC: 26315¹
Entrez Gene: 338707²
UniProtKB: Q76KP1³
Ensembl: ENSG00000182272⁷

Search outside databases for aliases for B4GALNT4 gene

Previous GC identifers: GC11P000360 GC11P000361 GC11P000362 GC11P000363 GC11P000364 GC11P000365 GC11P000366

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: B4GN4_HUMAN, Q76KP1

Function: Transfers N-acetylgalactosamine (GalNAc) from UDP-GalNAc to

N-acetylglucosamine-beta-benzyl with a beta-1,4-linkage to form N,N'-diacetyllactosediamine,

GalNAc-beta-1,4-GlcNAc structures in N-linked glycans and probably O-linked glycans

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the B4GALNT4 gene

Entrez Gene cytogenetic band: 11p15.5 Ensembl cytogenetic band: 11p15.5 HGNC cytogenetic band: 11p15.5

B4GALNT4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure

GeneLoc location for GC11P000368: (about GC identifiers)

Start:	359,804 bp from pter
End:	372,116 bp from pter
Size:	12,313 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000011.8 NT_035113.6

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: B4GN4_HUMAN, Q76KP1 (See protein sequence)

Recommended Name: N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase

Size: 1039 amino acids; 116513 Da

Subcellular location: Golgi apparatus, Golgi stack membrane; Single-pass type II membrane protein

(By similarity)

Secondary accessions: Q96LV2

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_848632.2

ENSEMBL proteins:

ENSP00000328277

Human Recombinant Proteins

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Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

4 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005794	Golgi apparatus	IEA	--
GO:0016020	membrane	IEA	--
GO:0016021	integral to membrane	IEA	--
GO:0032580	Golgi cisterna membrane	IEA	--

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Antibodies for B4GALNT4:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
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	Search for antibodies at Abcam and the World's Antibody Gateway (free search engine of over 150 antibody companies)
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Search Novus for antibodies for B4GALNT4

Assays for B4GALNT4:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry Q76KP1

ProtoNet protein and cluster: Q76KP1

1 Blocks protein family: IPB011658 PA14

UniProtKB/Swiss-Prot: B4GN4_HUMAN, Q76KP1

Similarity: Belongs to the chondroitin N-acetylgalactosaminyltransferase family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (B4GALNT4)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_178537

Applied Biosystems Silencer® siRNAs for B4GALNT4

Sigma-Aldrich siRNA for B4GALNT4

Sigma-Aldrich shRNA for B4GALNT4

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_178537
Myc/DDK tagged cDNA clone in CMV expression vector: NM_178537
untagged cDNA clone in CMV expression vector: NM_178537

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_178537

UniProtKB/Swiss-Prot: B4GN4_HUMAN, Q76KP1

Function: Transfers N-acetylgalactosamine (GalNAc) from UDP-GalNAc to

N-acetylglucosamine-beta-benzyl with a beta-1,4-linkage to form N,N'-diacetyllactosediamine,

GalNAc-beta-1,4-GlcNAc structures in N-linked glycans and probably O-linked glycans

Catalytic activity: UDP-N-acetyl-D-galactosamine + N-acetyl-beta-D-glucosaminyl group = UDP +

N-acetyl-beta-D-galactosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl group

Enzyme Number (IUBMB): EC 2.4.1.244

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0016740	transferase activity	IEA	--
GO:0033842	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for B4GALNT4

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (B4GALNT4)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_178537

Sigma-Aldrich siRNA for B4GALNT4

Sigma-Aldrich shRNA for B4GALNT4

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_178537

REFSEQ mRNAs for B4GALNT4 gene:

NM_178537.4

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_178537

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_178537
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_178537
                                 untagged cDNA clone in CMV expression vector: NM_178537

Additional cDNA sequence:

AB089939.1 AK057774.1 BC131528.1

5 DOTS entries:

DT.40257662 DT.100749706 DT.100023210 DT.100749707 DT.95262150

24/68 AceView cDNA sequences (see all 68 ):

BM845019 BF059094 AI051625 AI287702 BM931362 BM975059 BI822361 AI870328

BM724766 AI276827 AI378310 NM_178537 AA326392 AB089939 BM672962 AI216466

BQ896854 AK057774 AI869209 AI141997 BF115668 AW297264 BC035906 BQ646410

highest scoring ESTs for B4GALNT4:

N56877 AA933730 AB089939 AI870328 AK057774 AW166819 BF342486 BF526541 BM672962 BM686782

Unigene Cluster for B4GALNT4:

Beta-1,4-N-acetyl-galactosaminyl transferase 4

Hs.148074 [show with all ESTs]

Unigene Representative Sequence: NM_178537

GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for B4GALNT4

ExUns:	1	^	2	^	3	^	4	^	5	^	6	^	7a	·	7b	^	8	^	9
SP1:
SP2:
SP3:

About this scheme

ECgene alternative splicing isoforms for B4GALNT4

1 Ensembl transcript including schematic representation:

ENST00000329962

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

B4GALNT4 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for B4GALNT4

¹ / ² / ³

4 probe-sets matching B4GALNT4 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
82559_at²^{, 3}	U95-E	1	1.00	1.00	0.88	0.79	AI870328	0.80	1.00	0.91	1
72246_at²^{, 3}	U95-D	1	0.94	1.00	0.96	1.22	N56877	1.00	1.00	1.00	1
238080_at²^{, 3}	U133-B	1	1.00	1.00	--	--	BF195052	0.60	1.00	0.82	1
238080_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks B4GALNT4 for binary patterns associated with the probe-sets selected above

About GeneDecksing

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: TGGAGCGTCC

SOURCE GeneReport for Unigene cluster: Hs.148074
UniProtKB/Swiss-Prot: B4GN4_HUMAN, Q76KP1
Tissue specificity: Highly expressed in ovary, adult and fetal brain. Also expressed in fetal
kidney and lung

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for B4GALNT4 gene from 5/7 species (see all 7 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
rat (Rattus norvegicus)	B4galnt4¹	--	beta-1,4-N-acetyl-galactosaminyl transferase 4	81.9(n) 86.16(a)	309105 XM_219477.4 XP_219477.4
mouse (Mus musculus)	B4galnt4^{1, 5}	7⁵	beta-1,4-N-acetyl-galactosaminyl transferase 4^{1, 5}	82.18(n)¹ 85.88(a)¹	330671¹ NM_177897.3¹ NP_808565.2¹ AB114827⁵ AW120563⁵ (see all 14)
chicken (Gallus gallus)	B4GALNT4¹	--	beta-1,4-N-acetyl-galactosaminyl transferase 4	68.4(n) 66.87(a)	770601 XM_001233940.1 XP_001233941.1
zebrafish (Danio rerio)	LOC565184¹	--	similar to beta-1,4-N-acetyl-galactosaminyl transferase more	61.27(n) 62.11(a)	565184 XM_001920840.1 XP_001920875.1
African clawed frog (Xenopus laevis)	Xl.2208²	--	Xenopus laevis transcribed sequence with moderate similarity more	75.34(n)	BQ725566.1

About this table Species with no ortholog for B4GALNT4

ENSEMBL Gene Tree for B4GALNT4

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for B4GALNT4 gene

B4GALNT3²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/87 NCBI SNPs in B4GALNT4 are shown (see all 87 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 32)

AB	SNP ID	Valid	Chr 11 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
--	rs11246132^1,2	A,C	358778(+)	`GCAGCC/TGGACA`	1	--	ng5¹		0	--	--	--	--
--	rs10902141^1,2	A,C	357818(+)	`gcctgA/Gaatcc`	1	--	ng5¹		0	--	--	--	--
	rs1134699^1,2	A,C	369598(-)	`GCGGGC/TTCGGG`	1	E/E	syn¹ ese³		0	--	--	--	--
	rs11825210^1,2	C	363759(+)	`ATGGCC/TTCCCG`	1	A/A	syn¹ ese³		0	--	--	--	--
	rs10751657^1,2	A,C,F,H	367795(+)	`GACCCA/GACTGC`	1	--	int¹		12		EU EA WA	1258
--	rs11246136^1,2	A,C,F,H	361265(+)	`GCAGAC/ATGTTC`	1	--	int¹		4		EU EA WA	420
	rs12361394^1,2	A,C,F,H	369097(+)	`GAAGGC/TTTCTG`	1	--	int¹		3		EU EA	300
	rs7396812^1,2	A,C,F,H	363404(-)	`GTTCAC/TTCTCT`	1	--	int¹ trp³		4		EU EA WA	412
	rs7481525^1,2	A,C,F,H	368188(-)	`CATGCG/AGCTGT`	1	--	int¹		4		EU EA WA	418
--	rs7482311^1,2	A,C	362456(-)	`TGCTCA/GGCCAC`	1	--	int¹		0	--	--	--	--

About this table

HapMap Linkage Disequilibrium images for B4GALNT4 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

6 PubMed articles for B4GALNT4 gene:

Molecular cloning and characterization of beta1,4-N- acetylgalactosaminyltransferases IV synthesizing N,N'- diacetyllactosediamine. (PubMed id 15044014)^{1, 2, 3, 4} Gotoh M.... Narimatsu H. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{3, 4} Ota T....Sugano S. (2004)
A necessary and sufficient determinant for protein-selective glycosylation in vivo. (PubMed id 18048353)³ Miller E....Baenziger J.U. (2008)
Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PubMed id 15146197)³ Brandenberger R.... Stanton L.W. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Apical Golgi localization of N,N'-diacetyllactosediamine synthase, beta4GalNAc-T3, is responsible for LacdiNAc expression on gastric mucosa. (PubMed id 16728562)¹ Ikehara Y.... Narimatsu H. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 338707	HGNC: 26315	AceView: Beta4GalNAc-T4	Ensembl:ENSG00000182272	euGenes: HUgn338707
ECgene: B4GALNT4	H-InvDB: B4GALNT4

(According to HUGE)
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(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
GGDB	http://riodb.ibase.aist.go.jp/rcmg/ggdb/

Licensable Technologies for B4GALNT4
(Available from WIS Yeda, Salk, Tufts)

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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for B4GALNT4:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for B4GALNT4-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

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B4GALNT4 Gene

protein-coding GIFtS: 46

Aliases &
Descriptions
for B4GALNT4

Summaries
for B4GALNT4

Genomic Location
for B4GALNT4

Proteins
for B4GALNT4

Protein Domains/
Families
for B4GALNT4

Gene Function
for B4GALNT4

Pathways & Interactions
for B4GALNT4

Drugs & Compounds
for B4GALNT4

Transcripts
for B4GALNT4

Expression
for B4GALNT4

Orthologs
for B4GALNT4

Paralogs
for B4GALNT4

SNPs/Variants
for B4GALNT4

Disorders & Mutations
for B4GALNT4

Medical News
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Publications
for B4GALNT4

Search for B4GALNT4

Genome Databases showing B4GALNT4

Other Databases showing B4GALNT4

Specialized Databases showing B4GALNT4

Licensable Technologies
for B4GALNT4

Services
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Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

B4GALNT4 Gene

protein-coding GIFtS: 46

Aliases & Descriptionsfor B4GALNT4

Summariesfor B4GALNT4

Genomic Locationfor B4GALNT4

Proteinsfor B4GALNT4

Protein Domains/Familiesfor B4GALNT4

Gene Functionfor B4GALNT4

Pathways & Interactionsfor B4GALNT4

Drugs & Compoundsfor B4GALNT4

Transcriptsfor B4GALNT4

Expression for B4GALNT4

Orthologsfor B4GALNT4

Paralogsfor B4GALNT4

SNPs/Variantsfor B4GALNT4

Disorders & Mutationsfor B4GALNT4

Medical Newsfor B4GALNT4

Publicationsfor B4GALNT4

Search for B4GALNT4

Genome Databases showing B4GALNT4

Other Databases showing B4GALNT4

Specialized Databases showing B4GALNT4

Licensable Technologiesfor B4GALNT4

Servicesfor B4GALNT4

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for B4GALNT4

Summaries
for B4GALNT4

Genomic Location
for B4GALNT4

Proteins
for B4GALNT4

Protein Domains/
Families
for B4GALNT4

Gene Function
for B4GALNT4

Pathways & Interactions
for B4GALNT4

Drugs & Compounds
for B4GALNT4

Transcripts
for B4GALNT4

Expression
for B4GALNT4

Orthologs
for B4GALNT4

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for B4GALNT4

SNPs/Variants
for B4GALNT4

Disorders & Mutations
for B4GALNT4

Medical News
for B4GALNT4

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for B4GALNT4

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for B4GALNT4

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