B3GNT9 Gene
protein-coding GIFtS: 44
GCID: GC16M067182
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UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase...
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Aliases
for B3GNT9 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| UDP-GlcNAc:BetaGal Beta-1,3-N-Acetylglucosaminyltransferase 91 2 | | Beta-1,3-Galactosyltransferase-Related Protein2 | | Beta-1,3-N-Acetylglucosaminyltransferase 92 3 | | Beta3Gn-T93 | | BGnT-92 3 | | Beta-1,3-Gn-T93 | | MGC46551 | | Beta3Gn-T93 | | Beta-1,3-Gn-T93 | | EC 2.4.1.-3 |
Export aliases for B3GNT9 gene to outside databasesPrevious GC identifers: GC16M065740 GC16M053055 |
Summaries
for B3GNT9 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for B3GNT9 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000016.9 NC_018927.1 NT_010498.15
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the B3GNT9 gene promoter:
E2F E2F-1 p53 ATF-2 c-Jun c-Ets-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for B3GNT9
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat B3GNT9 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 16q22.1 Ensembl cytogenetic band: 16q22.1 HGNC cytogenetic band: 16q22.1B3GNT9 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16M067182: view genomic region
(about GC identifiers)
Start:
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67,182,005 bp from pter |
End:
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67,185,117 bp from pter |
Size:
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3,113 bases |
Orientation:
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minus strand |
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Proteins
for B3GNT9 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: B3GN9_HUMAN, Q6UX72 (See
protein sequence)Recommended Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 Size: 402 amino acids; 43751 Da
Subcellular location: Golgi apparatus membrane; Single-pass type II membrane protein (Potential)
Sequence caution: Sequence=BC012191; Type=Frameshift; Positions=81;
Secondary accessions: Q96EK0Explore the universe of human proteins at neXtProt for B3GNT9: NX_Q6UX72
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q6UX72
B3GNT9 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_171608.2
ENSEMBL proteins: ENSP00000400157 Reactome Protein details: Q6UX72
Human Recombinant Protein Products:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000139 | Golgi membrane |
IEA | -- | | GO:0016021 | integral to membrane |
IEA | -- |
B3GNT9 for ontologies About GeneDecksing
B3GNT9 Antibody Products:
Assay Products for B3GNT9: |
Protein
Domains /
Families
for B3GNT9 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
B3GNT9 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q6UX72ProtoNet protein and cluster: Q6UX72 1 Blocks protein family: IPB002659 Glycosyl transferase
UniProtKB/Swiss-Prot: B3GN9_HUMAN, Q6UX72Similarity: Belongs to the glycosyltransferase 31 family |
Function
for B3GNT9 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Enzyme Number (IUBMB): EC 2.4.1.-1
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for B3GNT9 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for B3GNT9 (see all 2)
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for B3GNT9 |
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008378 | galactosyltransferase activity |
IEA | -- |
B3GNT9 for ontologies About GeneDecksing
3 GenomeRNAi human phenotypes for B3GNT9:
|
Pathways & Interactions
for B3GNT9 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Asparagine N-linked glycosylation | | | 2 | Addition of GalNAc to the Tn antigen via an alpha-1,6 linkage forms a Core 7 glycoprotein | |
Pathway sources
See GeneCards unified pathways
Show all pathways
3 
Reactome Pathways for B3GNT9
B3GNT9 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for B3GNT9
STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)
2 Interacting proteins for B3GNT9 (Q6UX723 ENSP000004001574) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006486 | protein glycosylation |
IEA | -- |
B3GNT9 for ontologies About GeneDecksing
|
Drugs & Compounds
for B3GNT9 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for B3GNT9
Search CenterWatch for drugs/clinical trials and news about B3GNT9 / B3GN9
|
Transcripts
for B3GNT9 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for B3GNT9 gene: NM_033309.2 Unigene Cluster for B3GNT9: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 Hs.744158 [show with all ESTs]Unigene Representative Sequence: NM_0333091 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000449549(uc002erf.3)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for B3GNT9 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for B3GNT9 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: B3GNT9 (NM_033309) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for B3GNT9 | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat B3GNT9 |
Additional cDNA sequence: AF171091.1 AY358485.1 BC012191.1 BC022849.2 3 DOTS entries: DT.315793 DT.95114684 DT.95114681 24/141 AceView cDNA sequences (see all 141): BM670122 BE745192 AI684669 AW860395 BQ000858 AI568839 BF528627 AI362072 BQ776838 AW273812 AW340633 BM703331 AI355966 AA938684 AI201453 CK819684 AA586811 AI143671 BM664802 AW594281 BM707951 CA427691 BU626001 AW137874
GeneLoc Exon Structure
|
Expression
for B3GNT9 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| B3GNT9 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AGTTAATTAC
About this image
See B3GNT9 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for B3GNT9
SOURCE GeneReport for Unigene cluster: Hs.744158
SABiosciences Custom PCR Arrays for B3GNT9
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for B3GNT9
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat B3GNT9 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat B3GNT9 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat B3GNT9 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for B3GNT9 |
Orthologs
for B3GNT9 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for B3GNT9 gene from 4/14 species (see all 14) About this table
ENSEMBL Gene Tree for B3GNT9 (if available)
TreeFam Gene Tree for B3GNT9 (if available) |
Paralogs
for B3GNT9 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for B3GNT9 gene
- B3GNT32 B3GNT22 B3GNT52 B3GALT52 B3GALT12 B3GNT42 B3GALT42 B3GNT72
- B3GALT22 B3GNT82 B3GNT62 B3GALNT12
7 SIMAP similar genes for B3GNT9 using alignment to 1 protein entry: B3GN9_HUMAN:B3GNT7 B3GNT2 B3GNT6 B3GNT3 B3GNT5 B3GNT4
B3GALT1
B3GNT9 for paralogs About GeneDecksing
|
Genomic Variants
for B3GNT9 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 16 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for B3GNT9 (67182005 - 67185117 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for B3GNT9: -- | SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for B3GNT9 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
 B3GNT9 for disorders About MalaCards
B3GNT9 for disorders About GeneDecksing
Human Genome Epidemiology (HuGE) Navigator: B3GNT9 (3 documents)
Export disorders for B3GNT9 gene to outside databases
|
Publications
for B3GNT9 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for B3GNT9 gene integrated from 9 sources:
(articles sorted by number of sources associating them with B3GNT9) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2, 3 Clark H.F.... Gray A.M. (2003)
- Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1 Bailey S.D....Anand S. (2010)
- Gene-centric association signals for lipids and apoli poproteins identified via the HumanCVD BeadChip. (PubMed id 19913121)1 Talmud P.J.... . (2009)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for B3GNT9 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing B3GNT9 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing B3GNT9 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing B3GNT9 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for B3GNT9 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for B3GNT9 gene:
Search GeneIP for patents involving B3GNT9
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for B3GNT9 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat B3GNT9 |
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