Aliases for B3GNT9 Gene
Aliases for B3GNT9 Gene
External Ids for B3GNT9 Gene
- HGNC: 28714
- Entrez Gene: 84752
- Ensembl: ENSG00000237172
- UniProtKB: Q6UX72
Previous GeneCards Identifiers for B3GNT9 Gene
- GC16M065740
- GC16M067182
- GC16M053055
Summaries for B3GNT9 Gene
GeneCards Summary for B3GNT9 Gene
B3GNT9 (UDP-GlcNAc:BetaGal Beta-1,3-N-Acetylglucosaminyltransferase 9) is a Protein Coding gene. Among its related pathways are O-linked glycosylation and Metabolism of proteins. GO annotations related to this gene include transferase activity, transferring glycosyl groups and galactosyltransferase activity. An important paralog of this gene is B3GNT7.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for B3GNT9 Gene
Genomics for B3GNT9 Gene
Regulatory Elements for B3GNT9 Gene
Enhancers for B3GNT9 Gene
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around B3GNT9 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the B3GNT9 gene promoter:
Regulatory Element Products
Genomic Location for B3GNT9 Gene
- Chromosome:
- 16
- Start:
- 67,148,102 bp from pter
- End:
- 67,151,214 bp from pter
- Size:
- 3,113 bases
- Orientation:
- Minus strand
Genomic View for B3GNT9 Gene
Genes around B3GNT9 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 16q22.1 by Ensembl
- 16q22.1 by Entrez Gene
- 16q22.1 by HGNC
B3GNT9 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for B3GNT9 Gene
Proteins for B3GNT9 Gene
-
Protein details for B3GNT9 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q6UX72-B3GN9_HUMAN
- Recommended name:
- UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
- Protein Accession:
- Q6UX72
- Q96EK0
Protein attributes for B3GNT9 Gene
- Size:
- 402 amino acids
- Molecular mass:
- 43751 Da
- Quaternary structure:
- No Data Available
- SequenceCaution:
-
- Sequence=BC012191; Type=Frameshift; Positions=81; Evidence={ECO:0000305};
Protein Expression for B3GNT9 Gene
Post-translational modifications for B3GNT9 Gene
Other Protein References for B3GNT9 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for B3GNT9
- Invitrogen Antibodies for B3GNT9
- Search GeneTex for Antibodies for B3GNT9
Protein Products
-
OriGene Purified Proteins for B3GNT9
- Search Origene for MassSpec and Protein Over-expression Lysates for B3GNT9
- Origene Custom Protein Services for B3GNT9
- Search GeneTex for Proteins for B3GNT9
Assay Products
No data available for DME Specific Peptides for B3GNT9 Gene
Domains & Families for B3GNT9 Gene
Gene Families for B3GNT9 Gene
Protein Domains for B3GNT9 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for B3GNT9 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q6UX72- Family:
-
- Belongs to the glycosyltransferase 31 family.
Function for B3GNT9 Gene
Enzyme Numbers (IUBMB) for B3GNT9 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0008378 | galactosyltransferase activity | IEA | -- |
| GO:0016740 | transferase activity | IEA | -- |
| GO:0016757 | transferase activity, transferring glycosyl groups | IEA | -- |
Phenotypes for B3GNT9 Gene
- GenomeRNAi human phenotypes for B3GNT9:
Animal Model Products
-
Taconic Biosciences Mouse Models for B3GNT9
- Cyagen custom Knockout/knockin (KOKI) mouse models for B3GNT9
-
-
ViGene Biosciences lentiviral particle packaged cDNA for B3GNT9 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for B3GNT9 gene
- Search ViGene Biosciences for B3GNT9
CRISPR Products
-
OriGene CRISPR knockouts for B3GNT9
-
Santa Cruz Biotechnology (SCBT) CRISPR for B3GNT9
- GenScript: Design CRISPR guide RNA sequences for B3GNT9
miRNA Products
- Search ViGene Biosciences for B3GNT9
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for B3GNT9
- Browse OriGene Inhibitory RNA Products For B3GNT9
-
ViGene Biosciences ready-to-package AAV shRNAs for B3GNT9 gene
Clone Products
-
OriGene ORF clones in human for B3GNT9
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for B3GNT9
- VectorBuilder custom plasmid, inducible vectors for B3GNT9
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for B3GNT9
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for B3GNT9
-
ViGene Biosciences adenoviral particle packaged cDNA for B3GNT9 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for B3GNT9 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for B3GNT9 gene
Flow Cytometry Products
No data available for Molecular function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for B3GNT9 Gene
Localization for B3GNT9 Gene
Subcellular locations from UniProtKB/Swiss-Prot for B3GNT9 Gene
- Golgi apparatus membrane; Single-pass type II membrane protein.
| Compartment | Confidence |
|---|---|
| golgi apparatus | 5 |
| nucleus | 4 |
| extracellular | 1 |
| mitochondrion | 1 |
| peroxisome | 1 |
| endoplasmic reticulum | 1 |
| lysosome | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | -- |
| GO:0001650 | fibrillar center | IDA | -- |
| GO:0005794 | Golgi apparatus | IDA | -- |
| GO:0016020 | membrane | IEA | -- |
| GO:0016021 | integral component of membrane | IEA | -- |
Pathways & Interactions for B3GNT9 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Metabolism of proteins | ||
| 2 | O-linked glycosylation | ||
Pathways by source for B3GNT9 Gene
4 Reactome pathways for B3GNT9 Gene
Interacting Proteins for B3GNT9 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006486 | protein glycosylation | IEA | -- |
No data available for SIGNOR curated interactions for B3GNT9 Gene
Transcripts for B3GNT9 Gene
mRNA/cDNA for B3GNT9 Gene
- (1) REFSEQ mRNAs :
- (4) Additional mRNA sequences :
- (141) Selected AceView cDNA sequences:
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for B3GNT9 Gene
CRISPR Products
-
OriGene CRISPR knockouts for B3GNT9
-
Santa Cruz Biotechnology (SCBT) CRISPR for B3GNT9
- GenScript: Design CRISPR guide RNA sequences for B3GNT9
miRNA Products
- Search ViGene Biosciences for B3GNT9
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for B3GNT9
- Browse OriGene Inhibitory RNA Products For B3GNT9
-
ViGene Biosciences ready-to-package AAV shRNAs for B3GNT9 gene
Clone Products
-
OriGene ORF clones in human for B3GNT9
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for B3GNT9
- VectorBuilder custom plasmid, inducible vectors for B3GNT9
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for B3GNT9
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for B3GNT9 Gene
This gene is overexpressed in Serum (64.5).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for B3GNT9 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of B3GNT9 Gene:
B3GNT9SOURCE GeneReport for Unigene cluster for B3GNT9 Gene:
Hs.744158Evidence on tissue expression from TISSUES for B3GNT9 Gene
- Lung(4.1)
Primer Products
-
OriGene qPCR primer pairs for B3GNT9
-
OriGene qPCR primer pairs and template standards for B3GNT9
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for B3GNT9 Gene
Orthologs for B3GNT9 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| cow (Bos Taurus) |
Mammalia | B3GNT9 34 |
|
||
| dog (Canis familiaris) |
Mammalia | B3GNT9 34 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | B3gnt9 34 |
|
||
| mouse (Mus musculus) |
Mammalia | B3gnt9 34 16 35 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | B3GNT9 35 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | -- 35 |
|
ManyToMany | |
| chicken (Gallus gallus) |
Aves | B3GNT9 34 35 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | B3GNT9 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | b3gnt9 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | b3gnt9 34 35 |
|
- Species where no ortholog for B3GNT9 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chimpanzee (Pan troglodytes)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for B3GNT9 Gene
Paralogs for B3GNT9 Gene
(6) SIMAP similar genes for B3GNT9 Gene using alignment to 1 proteins:
Variants for B3GNT9 Gene
| SNP ID | Clin | Chr 16 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000042696 | -- | 67,151,388(+) | CTGTC(-/T)TCTTA | upstream-variant-2KB | |
| rs1000114051 | -- | 67,152,868(+) | AACTG(A/T)GTCCA | upstream-variant-2KB | |
| rs1000531733 | -- | 67,148,098(+) | AGAAA(A/G)ATGTA | downstream-variant-500B, utr-variant-3-prime | |
| rs1000562328 | -- | 67,151,202(+) | TAGCT(C/G)CCCCA | upstream-variant-2KB | |
| rs1000963083 | -- | 67,148,559(+) | TTGGT(A/T)TTTTG | intron-variant, downstream-variant-500B, utr-variant-3-prime |
Residual Variation Intolerance Score:
32.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.87;
18.07% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for B3GNT9 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- B3GNT9
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for B3GNT9 Gene
Disorders for B3GNT9 Gene
Relevant External Links for B3GNT9
No disorders were found for B3GNT9 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for B3GNT9 Gene
Publications for B3GNT9 Gene
- The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 2 3 4 64
- Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 46 64
- An empirical framework for binary interactome mapping. (PMID: 19060904) Venkatesan K. … Vidal M. (Nat. Methods 2009) 3 64
- Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud P.J. … . (Am. J. Hum. Genet. 2009) 3 64
- Hsp90 cochaperone Aha1 downregulation rescues misfolding of CFTR in cystic fibrosis. (PMID: 17110338) Wang X. … Balch W.E. (Cell 2006) 3 64
Products for B3GNT9 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
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- Browse Cell Selection and Detection Kits
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- Custom Assay Services
- OriGene Purified Proteins for B3GNT9
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- Origene Custom Protein Services for B3GNT9
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for B3GNT9
- Browse OriGene Inhibitory RNA Products For B3GNT9
- OriGene qPCR primer pairs and template standards for B3GNT9
- OriGene qPCR primer pairs for B3GNT9
- OriGene CRISPR knockouts for B3GNT9
- OriGene ORF clones in human for B3GNT9
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For B3GNT9
- GenScript: Next-day shipping cDNA ORF clone for B3GNT9 in any vector
- GenScript Custom Purified and Recombinant Proteins Services for B3GNT9
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- GenScript: Design CRISPR guide RNA sequences for B3GNT9
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- CloneReady with Over 120,000 Genes
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- Sino Biological Human cDNA Clone for B3GNT9
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- Novus Biologicals Antibodies for B3GNT9
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- Novus Biologicals
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- Taconic Biosciences Mouse Models for B3GNT9
- Find your next knockout model in the Taconic Knockout Repository
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- Humanized Mice
- Invitrogen Antibodies for B3GNT9
- ViGene Biosciences adenoviral particle packaged cDNA for B3GNT9 gene
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- Search ViGene Biosciences for B3GNT9
- Horizon Cell Lines for B3GNT9
- Cyagen custom Knockout/knockin (KOKI) mouse models for B3GNT9
- VectorBuilder custom plasmid, inducible vectors for B3GNT9
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for B3GNT9
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for B3GNT9 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
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- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer