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Aliases for B3GALT5-AS1 Gene

Subcategory (RNA class) for B3GALT5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for B3GALT5-AS1 Gene

  • B3GALT5 Antisense RNA 1 2 3 4
  • C21orf88 3 4
  • Chromosome 21 Open Reading Frame 88 2
  • B3GALT5 Antisense Gene Protein 1 4

External Ids for B3GALT5-AS1 Gene

Previous HGNC Symbols for B3GALT5-AS1 Gene

  • C21orf88

Summaries for B3GALT5-AS1 Gene

GeneCards Summary for B3GALT5-AS1 Gene

B3GALT5-AS1 (B3GALT5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for B3GALT5-AS1 Gene

Genomics for B3GALT5-AS1 Gene

Genomic Location for B3GALT5-AS1 Gene

Start:
39,597,147 bp from pter
End:
39,612,822 bp from pter
Size:
15,676 bases
Orientation:
Minus strand

Genomic View for B3GALT5-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for B3GALT5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for B3GALT5-AS1 Gene

No data available for Regulatory Elements for B3GALT5-AS1 Gene

Proteins for B3GALT5-AS1 Gene

  • Protein details for B3GALT5-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P59052-B3AS1_HUMAN
    Recommended name:
    Putative uncharacterized protein B3GALT5-AS1
    Protein Accession:
    P59052
    Secondary Accessions:
    • Q0VDC1
    • Q547X5

    Protein attributes for B3GALT5-AS1 Gene

    Size:
    145 amino acids
    Molecular mass:
    15706 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for B3GALT5-AS1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for B3GALT5-AS1 Gene

Proteomics data for B3GALT5-AS1 Gene at MOPED

Post-translational modifications for B3GALT5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for B3GALT5-AS1 Gene

Domains for B3GALT5-AS1 Gene

Protein Domains for B3GALT5-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with B3GALT5-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for B3GALT5-AS1 Gene

Function for B3GALT5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for B3GALT5-AS1 Gene

Localization for B3GALT5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for B3GALT5-AS1 Gene

Pathways for B3GALT5-AS1 Gene

SuperPathways for B3GALT5-AS1 Gene

No Data Available

Interacting Proteins for B3GALT5-AS1 Gene

Gene Ontology (GO) - Biological Process for B3GALT5-AS1 Gene

None

No data available for Pathways by source for B3GALT5-AS1 Gene

Transcripts for B3GALT5-AS1 Gene

mRNA/cDNA for B3GALT5-AS1 Gene

(1) REFSEQ mRNAs :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate B3GALT5-AS1
    • Block miRNA regulation of B3GALT5-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for B3GALT5-AS1

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for B3GALT5-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for B3GALT5-AS1 Gene

    No ASD Table

    Relevant External Links for B3GALT5-AS1 Gene

    GeneLoc Exon Structure for
    B3GALT5-AS1
    ECgene alternative splicing isoforms for
    B3GALT5-AS1

    Expression for B3GALT5-AS1 Gene

    mRNA expression in normal human tissues for B3GALT5-AS1 Gene

    mRNA Expression by UniProt/SwissProt for B3GALT5-AS1 Gene

    P59052-B3AS1_HUMAN
    Tissue specificity: Ubiquitous
    genes like me logo Genes that share expressions with B3GALT5-AS1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Protein expression for B3GALT5-AS1 Gene

    Orthologs for B3GALT5-AS1 Gene

    This gene was present in the common ancestor of human and chimp.

    Orthologs for B3GALT5-AS1 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia C21orf88 36
    • 96 (a)
    OneToOne
    Species with no ortholog for B3GALT5-AS1:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • mouse (Mus musculus)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for B3GALT5-AS1 Gene

    ENSEMBL:
    Gene Tree for B3GALT5-AS1 (if available)
    TreeFam:
    Gene Tree for B3GALT5-AS1 (if available)

    Paralogs for B3GALT5-AS1 Gene

    No data available for Paralogs for B3GALT5-AS1 Gene

    Variants for B3GALT5-AS1 Gene

    Relevant External Links for B3GALT5-AS1 Gene

    HapMap Linkage Disequilibrium report
    B3GALT5-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for B3GALT5-AS1 Gene

    Disorders for B3GALT5-AS1 Gene

    No disorders were found for B3GALT5-AS1 Gene.

    No data available for UniProtKB/Swiss-Prot for B3GALT5-AS1 Gene

    Publications for B3GALT5-AS1 Gene

    1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A. … Antonarakis S.E. (Genomics 2002) 2 3 4
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
    4. Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. (PMID: 20494980) Warnatz H.J. … Yaspo M.L. (Nucleic Acids Res. 2010) 3
    5. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M. … Yaspo M.-L. (Nature 2000) 4

    Products for B3GALT5-AS1 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate B3GALT5-AS1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for B3GALT5-AS1
      • Block miRNA regulation of B3GALT5-AS1 using miScript Target Protectors

      Sources for B3GALT5-AS1 Gene

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