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B3GALT2 Gene

protein-coding GIFtS: 51

GC01M191414

UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
BETA3GALT2 ^²
Beta3Gal-T2 ^³
EC 2.4.1.- ^³
GLCT2 ^², ⁵
OTTHUMP00000033797 ^²
beta-3-galt2 ^²
beta3Gal-T2 ^¹, ²

Descriptions
Beta-1,3-GalTase 2 ^³
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 2 ^²
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 ^²
UDP-galactose:2-acetamido-2-deoxy-D-glucose 3beta-galactosyltransferase 2 ^³

External Ids
HGNC: 917¹
Entrez Gene: 8707²
UniProtKB: O43825³
Ensembl: ENSG00000162630⁷

Search outside databases for aliases for B3GALT2 gene

Previous GC identifers: GC01M190938 GC01M188662 GC01M189614 GC01M190436 GC01M189879

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for B3GALT2:

This gene is a member of the beta-1,3-galactosyltransferase (beta3GalT) gene family. This family

encodes type II membrane-bound glycoproteins with diverse enzymatic functions using different

donor substrates (UDP-galactose and UDP-N-acetylglucosamine) and different acceptor sugars

(N-acetylglucosamine, galactose, N-acetylgalactosamine). The beta3GalT genes are distantly related

to the Drosophila Brainiac gene and have the protein coding sequence contained in a single exon.

The beta3GalT proteins also contain conserved sequences not found in the beta4GalT or alpha3GalT

proteins. The carbohydrate chains synthesized by these enzymes are designated as type 1, whereas

beta4GalT enzymes synthesize type 2 carbohydrate chains. The ratio of type 1:type 2 chains changes

during embryogenesis. By sequence similarity, the beta3GalT genes fall into at least two groups:

beta3GalT4 and 4 other beta3GalT genes (beta3GalT1-3, beta3GalT5). This gene encodes a protein

that functions in N-linked glycoprotein glycosylation and shows strict donor substrate specificity

for UDP-galactose. [provided by RefSeq]

UniProtKB/Swiss-Prot: B3GT2_HUMAN, O43825

Function: Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates

with a terminal beta-N-acetylglucosamine (beta-GlcNAc) residue. Can also utilize substrates with a

terminal galactose residue, albeit with lower efficiency. Involved in the biosynthesis of the

carbohydrate moieties of glycolipids and glycoproteins. Inactive towards substrates with terminal

alpha-N-acetylglucosamine (alpha-GlcNAc) or alpha-N-acetylgalactosamine (alpha-GalNAc) residues

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the B3GALT2 gene

Entrez Gene cytogenetic band: 1q31 Ensembl cytogenetic band: 1q31.2 HGNC cytogenetic band: 1q31

B3GALT2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure

GeneLoc location for GC01M191414: (about GC identifiers)

Start:	191,414,799 bp from pter
End:	191,422,365 bp from pter
Size:	7,567 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000001.9 NT_004487.18

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: B3GT2_HUMAN, O43825 (See protein sequence)

Recommended Name: Beta-1,3-galactosyltransferase 2

Size: 422 amino acids; 49213 Da

Cofactor: Manganese (By similarity)

Subcellular location: Golgi apparatus membrane; Single-pass type II membrane protein (Probable)

Secondary accessions: Q9BZQ9

REFSEQ proteins: NP_003774.1

ENSEMBL proteins:

ENSP00000356404

Human Recombinant Proteins

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	Human Recombinant Proteins from Abnova (B3GALT2)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

4 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000139	Golgi membrane	IEA	--
GO:0005794	Golgi apparatus	IEA	--
GO:0016020	membrane	IEA	--
GO:0016021	integral to membrane	IEA	--

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Antibodies for B3GALT2:

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	Sigma-Aldrich Antibodies for B3GALT2
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	Novus Biologicals Antibodies for B3GALT2

Assays for B3GALT2:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry O43825

ProtoNet protein and cluster: O43825

1 Blocks protein family: IPB002659 Glycosyl transferase

UniProtKB/Swiss-Prot: B3GT2_HUMAN, O43825

Similarity: Belongs to the glycosyltransferase 31 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (B3GALT2)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (B3GALT2)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003783

Applied Biosystems Silencer® siRNAs for B3GALT2

Sigma-Aldrich siRNA for B3GALT2

Sigma-Aldrich shRNA for B3GALT2

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for B3GALT2
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_003783
Myc/DDK tagged cDNA clone in CMV expression vector: NM_003783
untagged cDNA clone in CMV expression vector: NM_003783

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_003783

UniProtKB/Swiss-Prot: B3GT2_HUMAN, O43825

Function: Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates

with a terminal beta-N-acetylglucosamine (beta-GlcNAc) residue. Can also utilize substrates with a

terminal galactose residue, albeit with lower efficiency. Involved in the biosynthesis of the

carbohydrate moieties of glycolipids and glycoproteins. Inactive towards substrates with terminal

alpha-N-acetylglucosamine (alpha-GlcNAc) or alpha-N-acetylgalactosamine (alpha-GalNAc) residues

Enzyme Number (IUBMB): EC 2.4.1.-

Genatlas biochemistry entry for B3GALT2:

UDP galactose

3 MGI mutant phenotypes (inferred from 1 allele) (MGI details for B3galt2):

behavior/neurological

growth/size

hearing/vestibular/ear

4 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0008378	galactosyltransferase activity	IEA	--
GO:0008499	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity	TAS	9417100
GO:0016757	transferase activity, transferring glycosyl groups	IEA	--
GO:0030145	manganese ion binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

UniProtKB/Swiss-Prot: B3GT2_HUMAN, O43825

Pathway: Protein modification; protein glycosylation

5/18 Interacting proteins for B3GALT2 (ENSP00000356404³) via UniProtKB, MINT, and/or STRING (see all 18 )

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
B3GALT4	ENSP00000363756³	STRING (score=.915)
B3GALT5	ENSP00000369992³	STRING (score=.907)
B3GNT5	ENSP00000316173³	STRING (score=.899)
CD3D	ENSP00000300692³	STRING (score=.899)
CD3E	ENSP00000354566³	STRING (score=.899)

About this table

2 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006486	protein amino acid glycosylation	TAS	9417100
GO:0009312	oligosaccharide biosynthetic process	IEA	--

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for B3GALT2

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (B3GALT2)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (B3GALT2)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003783

Sigma-Aldrich siRNA for B3GALT2

Sigma-Aldrich shRNA for B3GALT2

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_003783

REFSEQ mRNAs for B3GALT2 gene:

NM_003783.3

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_003783

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003783
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_003783
                                 untagged cDNA clone in CMV expression vector: NM_003783

Additional cDNA sequence: Y15060.1

2 DOTS entries:

DT.411694 DT.95265050

24/33 AceView cDNA sequences (see all 33 ):

BP374190 AA426162 AW069816 CK818941 AI393902 BC022507 Y15060 AI141592

AA424868 BG706170 BI544952 BX643256 AA887696 BQ017425 AW103171 BI549637

BX510089 BM126337 D81474 BX431199 BX418449 BI918921 R37009 Y15014

highest scoring ESTs for B3GALT2:

AF288390 AI141592 AL137949 BC022507 BG706170 BI544952 BI549637 BI918921 BX510089 Y15014

Unigene Clusters for B3GALT2:

UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2

Hs.518834 [show with all ESTs], Hs.716598 [show with all ESTs]

Unigene Representative Sequences: NM_003783, Y15060

GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:

ENST00000367434

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

B3GALT2 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for B3GALT2

¹ / ² / ³

5 probe-sets matching B3GALT2 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
38583_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	Y15014	0.80	1.00	0.91	1
217452_s_at²^{, 3}	U133-A	1	1.00	1.00	--	--	Y15014	0.80	1.00	0.91	1
210121_at²^{, 3}	U133-A	1	1.00	1.00	--	--	AF288390	0.80	1.00	0.91	1
217452_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--
210121_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: TTTGTCAACA

SOURCE GeneReport for Unigene clusters: Hs.518834 Hs.716598
Expression variation in blood from EXPOLDB for B3GALT2
UniProtKB/Swiss-Prot: B3GT2_HUMAN, O43825
Tissue specificity: Detected in heart and brain

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for B3GALT2 gene from 5/9 species (see all 9 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	B3GALT2¹	--	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, more	94.55(n) 98.82(a)	607356 XM_844140.1 XP_849233.1
chimpanzee (Pan troglodytes)	B3GALT2¹	--	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, more	99.84(n) 100(a)	469624 XM_001167219.1 XP_001167219.1
cow (Bos taurus)	B3GALT2¹	--	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, more	91.94(n) 97.16(a)	539815 NM_001076188.1 NP_001069656.1
rat (Rattus norvegicus)	B3galt2¹	--	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, more	91.31(n) 96.21(a)	686081 XM_001064019.1 XP_001064019.1
mouse (Mus musculus)	B3galt2^{1, 5}	1⁵	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, more^{1, 5}	89.89(n)¹ 94.31(a)¹	26878¹ NM_020025.3¹ NP_064409.2¹ AB039144⁵ AB039145⁵ (see all 22)

About this table Species with no ortholog for B3GALT2

ENSEMBL Gene Tree for B3GALT2

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for B3GALT2 gene

B3GALNT1² B3GALT5² B3GALT1²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 603018

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/13 PubMed articles for B3GALT2 gene (see all 13 ):

A family of human beta3-galactosyltransferases. Characterization of four members of a UDP-galactose:beta-N-acetyl-glucosamine/beta- nacetyl-galactosamine beta-1,3-galactosyltransferase family. (PubMed id 9582303)^{1, 2, 3, 4} Amado M.... Clausen H. (1998)
Cloning of a human UDP-galactose:2-acetamido-2-deoxy-D-glucose 3beta-galactosyltransferase catalyzing the formation of type 1 chains. (PubMed id 9417100)^{2, 3, 4} Kolbinger F....Katopodis A.G. (1998)
The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)^{3, 4} Gregory S.G.... Bentley D.R. (2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Cloning and characterization of 13 novel transcripts and the human RGS8 gene from the 1q25 region encompassing the hereditary prostate cancer (HPC1) locus. (PubMed id 11318611)^{3, 4} Sood R....Carpten J.D. (2001)
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)³ Kimura K.... Sugano S. (2006)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Identification and characterization of large galactosyltransferase gene families: galactosyltransferases for all functions. (PubMed id 10580128)³ Amado M.... Clausen H. (1999)
Characterization of the secreted, native gp120 and gp160 of the human immunodeficiency virus type 1. (PubMed id 2187500)³ Kalyanaraman V.S....Sarngadharan M.G. (1990)
Biosynthesis and processing of human immunodeficiency virus type 1 envelope glycoproteins: effects of monensin on glycosylation and transport. (PubMed id 2542563)³ Dewar R.L....Salzman N.P. (1989)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 8707	HGNC: 917	AceView: B3GALT2	Ensembl:ENSG00000162630	euGenes: HUgn8707
ECgene: B3GALT2	H-InvDB: B3GALT2

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
GGDB	http://riodb.ibase.aist.go.jp/rcmg/ggdb/Homolog?cat=symbol&symbol=B3GALT2
Functional Glycomics Gateway - GTase	http://www.functionalglycomics.org/glycomics/molecule/jsp/glycoEnzyme/viewGlycoEnzyme.jsp?gbpId=gt_hum_430

Licensable Technologies for B3GALT2
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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
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Enzo Life Sciences, and/or Tocris Bioscience)
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Products for B3GALT2:

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TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
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B3GALT2 Gene

protein-coding GIFtS: 51

Aliases &
Descriptions
for B3GALT2

Summaries
for B3GALT2

Genomic Location
for B3GALT2

Proteins
for B3GALT2

Protein Domains/
Families
for B3GALT2

Gene Function
for B3GALT2

Pathways & Interactions
for B3GALT2

Drugs & Compounds
for B3GALT2

Transcripts
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Expression
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Orthologs
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Paralogs
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Disorders & Mutations
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Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

B3GALT2 Gene

protein-coding GIFtS: 51

Aliases & Descriptionsfor B3GALT2

Summariesfor B3GALT2

Genomic Locationfor B3GALT2

Proteinsfor B3GALT2

Protein Domains/Familiesfor B3GALT2

Gene Functionfor B3GALT2

Pathways & Interactionsfor B3GALT2

Drugs & Compoundsfor B3GALT2

Transcriptsfor B3GALT2

Expression for B3GALT2

Orthologsfor B3GALT2

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SNPs/Variantsfor B3GALT2

Disorders & Mutationsfor B3GALT2

Medical Newsfor B3GALT2

Publicationsfor B3GALT2

Search for B3GALT2

Genome Databases showing B3GALT2

Other Databases showing B3GALT2

Specialized Databases showing B3GALT2

Licensable Technologiesfor B3GALT2

Servicesfor B3GALT2

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for B3GALT2

Summaries
for B3GALT2

Genomic Location
for B3GALT2

Proteins
for B3GALT2

Protein Domains/
Families
for B3GALT2

Gene Function
for B3GALT2

Pathways & Interactions
for B3GALT2

Drugs & Compounds
for B3GALT2

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