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AURKAPS1 Gene(Pseudogene)

Aurora Kinase A Pseudogene 1

GCID:
GC01M220266
GIFtS:
21
Genes Participants
UDN Logo

Aliases for AURKAPS1 Gene

Aliases for AURKAPS1 Gene

  • Aurora Kinase A Pseudogene 1 2 3 5
  • Serine/Threonine Kinase 6 Pseudogene 2 3
  • AurAps1 3
  • STK6P 3

External Ids for AURKAPS1 Gene

Previous HGNC Symbols for AURKAPS1 Gene

  • STK6P

Previous GeneCards Identifiers for AURKAPS1 Gene

  • GC00U909471
  • GC01M218507
  • GC01M220321
  • GC01M220439
  • GC01M191113

Summaries for AURKAPS1 Gene

GeneCards Summary for AURKAPS1 Gene

AURKAPS1 (Aurora Kinase A Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AURKAPS1 Gene

Genomics for AURKAPS1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for AURKAPS1 Gene

Enhancers for AURKAPS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G220270 1.1 ENCODE 0.7 -4.3 -4276 2.6 HDGF PKNOX1 CREB3L1 ARNT WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZBTB7B RPS15AP12 ZC3H11B SNX2P1 RAB3GAP2 BPNT1 AURKAPS1
GH01G220253 0.6 FANTOM5 0.4 +14.0 14034 0.4 JUND SMARCA4 POLR2A MORF4L1P1 AURKAPS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AURKAPS1 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the AURKAPS1 gene promoter:

Genomic Location for AURKAPS1 Gene

Chromosome:
1
Start:
220,266,179 bp from pter
End:
220,267,917 bp from pter
Size:
1,739 bases
Orientation:
Minus strand

Genomic View for AURKAPS1 Gene

Genes around AURKAPS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AURKAPS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AURKAPS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for AURKAPS1 Gene

Proteins for AURKAPS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for AURKAPS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AURKAPS1 Gene

Domains & Families for AURKAPS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AURKAPS1 Gene

Function for AURKAPS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AURKAPS1 Gene

Localization for AURKAPS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AURKAPS1 Gene

Pathways & Interactions for AURKAPS1 Gene

SuperPathways for AURKAPS1 Gene

PathCards logo More details on SuperPathways for AURKAPS1
No Data Available

Interacting Proteins for AURKAPS1 Gene

Gene Ontology (GO) - Biological Process for AURKAPS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AURKAPS1 Gene

Drugs & Compounds for AURKAPS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for AURKAPS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for AURKAPS1 Gene

(1) Additional mRNA sequences :
(272) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AURKAPS1 Gene

Aurora kinase A pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for AURKAPS1 Gene

No ASD Table

Relevant External Links for AURKAPS1 Gene

GeneLoc Exon Structure for
AURKAPS1
ECgene alternative splicing isoforms for
AURKAPS1

Expression for AURKAPS1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AURKAPS1 Gene

mRNA expression in normal human tissues for AURKAPS1 Gene
mRNA expression by BioGPS for AURKAPS1 GenemRNA expression by GTEx for AURKAPS1 Gene

NURSA nuclear receptor signaling pathways regulating expression of AURKAPS1 Gene:

AURKAPS1

SOURCE GeneReport for Unigene cluster for AURKAPS1 Gene:

Hs.744357
genes like me logo Genes that share expression patterns with AURKAPS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AURKAPS1 Gene

Orthologs for AURKAPS1 Gene

Evolution for AURKAPS1 Gene

ENSEMBL:
Gene Tree for AURKAPS1 (if available)
TreeFam:
Gene Tree for AURKAPS1 (if available)

No data available for Orthologs for AURKAPS1 Gene

Paralogs for AURKAPS1 Gene

No data available for Paralogs for AURKAPS1 Gene

Variants for AURKAPS1 Gene

Sequence variations from dbSNP and Humsavar for AURKAPS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000609596 -- 220,268,703(+) CAACA(C/T)ACATA intron-variant, upstream-variant-2KB
rs1002966071 -- 220,266,609(+) GATTG(A/T)GGGCA intron-variant, nc-transcript-variant
rs1003152038 -- 220,268,132(+) TTATA(A/G)CATTA intron-variant, upstream-variant-2KB
rs1003322993 -- 220,266,897(+) TGATA(C/T)TCTTT intron-variant, nc-transcript-variant
rs1003433152 -- 220,266,053(+) GGAAA(A/G)GGTAG intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for AURKAPS1 Gene

Variant ID Type Subtype PubMed ID
esv2673210 CNV deletion 23128226
esv2723173 CNV deletion 23290073
esv3588897 CNV loss 21293372
nsv4643 CNV deletion 18451855
nsv826675 CNV loss 20364138
nsv826686 CNV loss 20364138
nsv945298 CNV duplication 23825009

Relevant External Links for AURKAPS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AURKAPS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AURKAPS1 Gene

Disorders for AURKAPS1 Gene

Relevant External Links for AURKAPS1

Genetic Association Database (GAD)
AURKAPS1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AURKAPS1

No disorders were found for AURKAPS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AURKAPS1 Gene

Publications for AURKAPS1 Gene

  1. Assignment of STK6 to human chromosome 20q13.2-->q13.3 and a pseudogene STK6P to 1q41-->q42. (PMID: 9605851) Kimura M. … Okano Y. (Cytogenet. Cell Genet. 1997) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for AURKAPS1 Gene

Sources for AURKAPS1 Gene

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