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Aliases for ATXN2-AS Gene

Subcategory (RNA class) for ATXN2-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ATXN2-AS Gene

  • ATXN2 Antisense RNA 2 3 5

External Ids for ATXN2-AS Gene

Summaries for ATXN2-AS Gene

GeneCards Summary for ATXN2-AS Gene

ATXN2-AS (ATXN2 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ATXN2-AS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATXN2-AS Gene

Genomics for ATXN2-AS Gene

Regulatory Elements for ATXN2-AS Gene

Enhancers for ATXN2-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H111055 2.7 VISTA FANTOM5 ENCODE 11.7 -542.3 -542307 2 HDGF PKNOX1 ATF1 ZNF473 NFRKB FEZF1 ZBTB40 ZNF155 ELK1 EGR1 ADAM1A ATXN2 CUX2 MAPKAPK5 BRAP ATXN2-AS PCNPP1 IFT81 MYL2 LINC01405
GH12H111596 1.4 ENCODE dbSUPER 0.7 -0.7 -712 4 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF143 SH2B3 MAPKAPK5 ATXN2 ALDH2 TMEM116 ATXN2-AS LOC100101246
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ATXN2-AS on UCSC Golden Path with GeneCards custom track

Promoters for ATXN2-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000057455 -898 3601 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF143

Genomic Location for ATXN2-AS Gene

Chromosome:
12
Start:
111,599,498 bp from pter
End:
111,601,280 bp from pter
Size:
1,783 bases
Orientation:
Plus strand

Genomic View for ATXN2-AS Gene

Genes around ATXN2-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATXN2-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATXN2-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ATXN2-AS Gene

Proteins for ATXN2-AS Gene

Post-translational modifications for ATXN2-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATXN2-AS Gene

Domains & Families for ATXN2-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATXN2-AS Gene

Function for ATXN2-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATXN2-AS Gene

Localization for ATXN2-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATXN2-AS Gene

Pathways & Interactions for ATXN2-AS Gene

SuperPathways for ATXN2-AS Gene

No Data Available

Interacting Proteins for ATXN2-AS Gene

Gene Ontology (GO) - Biological Process for ATXN2-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATXN2-AS Gene

Drugs & Compounds for ATXN2-AS Gene

No Compound Related Data Available

Transcripts for ATXN2-AS Gene

mRNA/cDNA for ATXN2-AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATXN2-AS Gene

No ASD Table

Relevant External Links for ATXN2-AS Gene

GeneLoc Exon Structure for
ATXN2-AS
ECgene alternative splicing isoforms for
ATXN2-AS

Expression for ATXN2-AS Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATXN2-AS Gene

Orthologs for ATXN2-AS Gene

Evolution for ATXN2-AS Gene

ENSEMBL:
Gene Tree for ATXN2-AS (if available)
TreeFam:
Gene Tree for ATXN2-AS (if available)

No data available for Orthologs for ATXN2-AS Gene

Paralogs for ATXN2-AS Gene

No data available for Paralogs for ATXN2-AS Gene

Variants for ATXN2-AS Gene

Relevant External Links for ATXN2-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATXN2-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ATXN2-AS Gene

Disorders for ATXN2-AS Gene

Relevant External Links for ATXN2-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ATXN2-AS

No disorders were found for ATXN2-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATXN2-AS Gene

Publications for ATXN2-AS Gene

No publications were found for ATXN2-AS Gene.

Products for ATXN2-AS Gene

Sources for ATXN2-AS Gene

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