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Aliases for ATP8B5P Gene

Aliases for ATP8B5P Gene

  • ATPase, Class I, Type 8B, Member 5, Pseudogene 2 3
  • Flippase Expressed In Testis Splicing Form A Pseudogene 2 3
  • ATPase, Class I, Type 8B Family Pseudogene 3
  • Zinc Finger, AN1-Type Domain 6 Pseudogene 3
  • FETA 3

External Ids for ATP8B5P Gene

Summaries for ATP8B5P Gene

GeneCards Summary for ATP8B5P Gene

ATP8B5P (ATPase, Class I, Type 8B, Member 5, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP8B5P Gene

Genomics for ATP8B5P Gene

Genomic Location for ATP8B5P Gene

Start:
35,406,755 bp from pter
End:
35,483,035 bp from pter
Size:
76,281 bases
Orientation:
Plus strand

Genomic View for ATP8B5P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ATP8B5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP8B5P Gene

No data available for Regulatory Elements for ATP8B5P Gene

Proteins for ATP8B5P Gene

Post-translational modifications for ATP8B5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP8B5P Gene

Domains for ATP8B5P Gene

Gene Families for ATP8B5P Gene

HGNC:
  • PATP :ATPases / P-type
genes like me logo Genes that share domains with ATP8B5P: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for ATP8B5P Gene

Function for ATP8B5P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ATP8B5P Gene

Localization for ATP8B5P Gene

No data available for Gene Ontology (GO) - Cellular Components for ATP8B5P Gene

Pathways for ATP8B5P Gene

SuperPathways for ATP8B5P Gene

No Data Available

Interacting Proteins for ATP8B5P Gene

Gene Ontology (GO) - Biological Process for ATP8B5P Gene

None

No data available for Pathways by source for ATP8B5P Gene

Transcripts for ATP8B5P Gene

mRNA/cDNA for ATP8B5P Gene

Unigene Clusters for ATP8B5P Gene

ATPase, class I, type 8B, member 5, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ATP8B5P Gene

No ASD Table

Relevant External Links for ATP8B5P Gene

GeneLoc Exon Structure for
ATP8B5P
ECgene alternative splicing isoforms for
ATP8B5P

Expression for ATP8B5P Gene

mRNA expression in normal human tissues for ATP8B5P Gene

mRNA differential expression in normal tissues according to GTEx for ATP8B5P Gene

This gene is overexpressed in Testis (29.4).

SOURCE GeneReport for Unigene cluster for ATP8B5P Gene Hs.575661

genes like me logo Genes that share expressions with ATP8B5P: view

Orthologs for ATP8B5P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for ATP8B5P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Atp8b5 16
Species with no ortholog for ATP8B5P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ATP8B5P Gene

ENSEMBL:
Gene Tree for ATP8B5P (if available)
TreeFam:
Gene Tree for ATP8B5P (if available)

Paralogs for ATP8B5P Gene

No data available for Paralogs for ATP8B5P Gene

Variants for ATP8B5P Gene

Sequence variations from dbSNP and Humsavar for ATP8B5P Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs723877 -- 35,407,434(+) GTCGC(C/T)GTCGT intron-variant
rs731451 -- 35,470,006(-) AAGCC(C/T)GGAAA intron-variant
rs973976 -- 35,448,365(-) CCACT(A/G)TTATT intron-variant
rs991850 -- 35,473,740(-) CCTTG(C/T)CATAA nc-transcript-variant
rs1056267 -- 35,415,228(+) TGTTT(C/T)TAAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ATP8B5P Gene

Variant ID Type Subtype PubMed ID
nsv831545 CNV Loss 17160897

Relevant External Links for ATP8B5P Gene

HapMap Linkage Disequilibrium report
ATP8B5P

Disorders for ATP8B5P Gene

No disorders were found for ATP8B5P Gene.

No data available for UniProtKB/Swiss-Prot for ATP8B5P Gene

Publications for ATP8B5P Gene

  1. Identification of a novel mouse P4-ATPase family member highly expressed during spermatogenesis. (PMID: 19657017) Xu P. … Ding X.Y. (J. Cell. Sci. 2009) 2 3
  2. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang Z.D. … Gerstein M. (Genome Biol. 2010) 3
  3. Muscle function and postural balance in lifelong trained male footballers compared with sedentary elderly men and youngsters. (PMID: 20210903) Sundstrup E. … Krustrup P. (Scand J Med Sci Sports 2010) 2
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ATP8B5P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ATP8B5P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ATP8B5P
    • Block miRNA regulation of ATP8B5P using miScript Target Protectors

    Sources for ATP8B5P Gene

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