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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ATP7B Gene

protein-coding   GIFtS: 65
GCID: GC13M052506

ATPase, Cu++ transporting, beta polypeptide

(Previous names: ATPase, Cu++ transporting, beta polypeptide (Wilson disease)...)
(Previous symbol: WND)
 Explore 38 diseases affiliated with
ATP7B via our new
 Human Malady Compendium 
Biological research products
for ATP7B
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
ATPase, Cu++ Transporting, Beta Polypeptide1 2     EC 3.6.3.43 8
WND1 2 3 5     ATPase, Cu++ Transporting, Beta Polypeptide (Wilson Disease)1
Copper Pump 22 3     WD2
PWD2 3     ATPase, Cu(2+)- Transporting, Beta Polypeptide2
WC12 3     Copper-Transporting ATPase 22
Wilson Disease-Associated Protein2 3     EC 3.6.38

External Ids:    HGNC: 8701   Entrez Gene: 5402   Ensembl: ENSG000001231917   OMIM: 6068825   UniProtKB: P356703   

Export aliases for ATP7B gene to outside databases

Previous GC identifers: GC13M050506 GC13M046494 GC13M051443 GC13M050304 GC13M051404 GC13M033295


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ATP7B:
This gene is a member of the P-type cation transport ATPase family and encodes a protein with several membrane-spanning
domains, an ATPase consensus sequence, a hinge domain, a phosphorylation site, and at least 2 putative copper-binding
sites. This protein functions as a monomer, exporting copper out of the cells, such as the efflux of hepatic copper
into the bile. Alternate transcriptional splice variants, encoding different isoforms with distinct cellular
localizations, have been characterized. Mutations in this gene have been associated with Wilson disease (WD).
(provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: ATP7B_HUMAN, P35670
Function: Involved in the export of copper out of the cells, such as the efflux of hepatic copper into the bile

Gene Wiki entry for ATP7B (Wilson disease protein)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000013.10  NC_018924.1  NT_024524.14  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ATP7B gene promoter:
         ISGF-3   Sp1   p53   NRSF form 2   C/EBPalpha   GATA-1   CHOP-10   COMP1   MRF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): ATP7B promoter sequence
   Search SABiosciences Chromatin IP Primers for ATP7B

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ATP7B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 13q14.3   Ensembl cytogenetic band:  13q14.3   HGNC cytogenetic band: 13q14.3

ATP7B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ATP7B gene location

GeneLoc information about chromosome 13         GeneLoc Exon Structure

GeneLoc location for GC13M052506:  view genomic region     (about GC identifiers)

Start:
52,506,805 bp from pter      End:
52,585,630 bp from pter
Size:
78,826 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ATP7B_HUMAN, P35670 (See protein sequence)
Recommended Name: Copper-transporting ATPase 2  
Size: 1465 amino acids; 157263 Da
Subunit: Monomer. Interacts with COMMD1/MURR1. Interacts with DCTN4, in a copper-dependent manner. Interacts with ATOX1
Subcellular location: Golgi apparatus, trans-Golgi network membrane; Multi-pass membrane protein (By similarity).
Note=Predominantly found in the trans-Golgi network (TGN). Not redistributed to the plasma membrane in response to
elevated copper levels
Subcellular location: Isoform 2: Cytoplasm
Subcellular location: WND/140 kDa: Mitochondrion
Sequence caution: Sequence=AAA16173.1; Type=Frameshift; Positions=830; Sequence=AAA79211.1; Type=Frameshift;
Positions=456; Sequence=AAA79212.1; Type=Frameshift; Positions=456;
4 PDB 3D structures from and Proteopedia for ATP7B:
2ARF (3D)        2EW9 (3D)        2KOY (3D)        2ROP (3D)    
Secondary accessions: Q16318 Q16319 Q4U3V3 Q59FJ9 Q5T7X7
Alternative splicing: 4 isoforms:  P35670-1   P35670-2   P35670-3   P35670-4   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ATP7B: NX_P35670

Post-translational modifications:

  • Isoform 1 may be proteolytically cleaved at the N-terminus to produce the WND/140 kDa form1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P35670

  • 4/30 DME Specific Peptides for ATP7B (P35670) (see all 30)
     IIRFAFQ  VAMVGDG  ITGMTCA  PALAQAD 

    ATP7B Protein expression data from MOPED and PaxDb:    About this image 
    ATP7B Protein Expression
    REFSEQ proteins (3 alternative transcripts): 
    NP_000044.2  NP_001005918.1  NP_001230111.1  

    ENSEMBL proteins: 
     ENSP00000242839   ENSP00000383217   ENSP00000342559   ENSP00000416738   ENSP00000383221  
     ENSP00000393343   ENSP00000390360   ENSP00000443128  
    Reactome Protein details: P35670
    Human Recombinant Protein Products for ATP7B: 
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    Browse Proteins at Uscn

    Gene Ontology (GO): 5/12 cellular component terms (GO ID links to tree view) (see all 12):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000139Golgi membrane TAS--
    GO:0005622intracellular ----
    GO:0005624membrane fraction ----
    GO:0005739mitochondrion IEA--
    GO:0005770late endosome IDA15681833

    ATP7B for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ATP7B for domains           About GeneDecksing

    5/8 InterPro domains/families (see all 8):
     IPR006121 HeavyMe-assoc_HMA
     IPR023299 ATPase_P-typ_cyto_domN
     IPR008250 ATPase_P-typ_transduc_dom_A
     IPR017969 Heavy-metal-associated_CS
     IPR023214 HAD-like_dom

    Graphical View of Domain Structure for InterPro Entry P35670

    ProtoNet protein and cluster: P35670

    4 Blocks protein families:
    IPB001757 ATPase
    IPB001877 Copper-transporting ATPase 1 signature
    IPB006121 Heavy metal transport/detoxification protein
    IPB008250 E1-E2 ATPase-associated region


    UniProtKB/Swiss-Prot: ATP7B_HUMAN, P35670
    Domain: Each HMA domain can bind a copper ion, they are tightly packed and closely interact with each other. Wild-type
    ATP7B can usually be loaded with an average 5.5 copper atoms per molecule
    Similarity: Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily
    Similarity: Contains 6 HMA domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ATP7B_HUMAN, P35670
    Function: Involved in the export of copper out of the cells, such as the efflux of hepatic copper into the bile
    Catalytic activity: ATP + H(2)O + Cu(2+)(In) = ADP + phosphate + Cu(2+)(Out)

         Genatlas biochemistry entry for ATP7B:
    copper binding P-type ATPase 7B,1-60kDa,expressed in liver,kidney,brain,placenta,with alternatively spliced
    isoforms,tissue specific for brain and liver,and a 140kDa mitochondrial form,formed after proleolytic cleavage at the
    N terminus of ATP7B,involved in subcellular transport and copper efflux

         Enzyme Numbers (IUBMB): EC 3.6.3.41 2 EC 3.6.32

         Gene Ontology (GO): 5/7 molecular function terms (GO ID links to tree view) (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004008copper-exporting ATPase activity TAS16472602
    GO:0005507copper ion binding IDA14709553
    GO:0005515protein binding IPI16554302
    GO:0005524ATP binding IDA15205462
    GO:0015662ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism ----
         
    ATP7B for ontologies           About GeneDecksing


    Phenotypes:
         15 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Atp7b):
     behavior/neurological  cellular  endocrine/exocrine gland  growth/size  hematopoietic system 
     homeostasis/metabolism  immune system  integument  liver/biliary system  mortality/aging 
     muscle  nervous system  other  pigmentation  reproductive system 

    ATP7B for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-out Atp7btm1Tcg for ATP7B
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for ATP7B 

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    Inhib. RNA
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ATP7B


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Ion channel transport
    Ion channel transport1.00
    Ion transport by P-type ATPases0.32
    2Platinum Pathway, Pharmacokinetics/Pharmacodynamics
    Platinum Pathway, Pharmacokinetics/Pharmacodynamics1.00
    3SLC-mediated transmembrane transport
    Transmembrane transport of small molecules0.50

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    3        Reactome Pathways for ATP7B
        Transmembrane transport of small molecules
    Ion channel transport
    Ion transport by P-type ATPases

    1 PharmGKB Pathway for ATP7B
        Platinum Pathway, Pharmacokinetics/Pharmacodynamics


    ATP7B for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ATP7B

    STRING Interaction Network Preview (showing 5 interactants - click image to see 6)

    5/18 Interacting proteins for ATP7B (P356703 ENSP000002428394) via UniProtKB, MINT, STRING, and/or I2D (see all 18)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    DCTN4Q9UJW03, ENSP000004149064I2D: score=2 STRING: ENSP00000414906
    GLRXP357543, ENSP000002378584I2D: score=1 STRING: ENSP00000237858
    ATOX1O002443, ENSP000003168544I2D: score=2 STRING: ENSP00000316854
    ZBTB16Q055163, ENSP000003381574I2D: score=1 STRING: ENSP00000338157
    UBCP0CG483, ENSP000003448184I2D: score=1 STRING: ENSP00000344818
    About this table

    Gene Ontology (GO): 5/13 biological process terms (GO ID links to tree view) (see all 13):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006754ATP biosynthetic process IEA--
    GO:0006812cation transport ----
    GO:0006825copper ion transport IGI12572677
    GO:0006878cellular copper ion homeostasis TAS16554302
    GO:0006882cellular zinc ion homeostasis IEA--

    ATP7B for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    ATP7B for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for ATP7B

    5 HMDB Compounds for ATP7B    About this table
    CompoundSynonyms CAS #PubMed Ids
    ADPadenosindiphosphorsaeure (see all 8)58-64-0--
    Adenosine triphosphate5'-(tetrahydrogen triphosphate) Adenosine (see all 24)56-65-5--
    CopperCu (see all 2)7440-50-8--
    PhosphateNFB Orthophosphate (see all 13)14265-44-2--
    WaterDihydrogen oxide (see all 2)7732-18-5--

    1 DrugBank Compound for ATP7B    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    CisplatinCis-DDP (see all 4)15663-27-1transportersubstrate18998134 19075668 19470734

    10/16 Novoseek chemical compound relationships for ATP7B gene (see all 16)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    copper 90.1 548 16554302 (9), 10982773 (8), 16939419 (7), 19141620 (6) (see all 99)
    acyl phosphate 68.1 1 16939419 (1)
    tetrathiomolybdate 67 1 15703644 (1)
    copper(i) 59.2 3 19645496 (1), 19181666 (1), 16910670 (1)
    cisplatin 58.2 110 19141620 (8), 15102688 (5), 12509969 (5), 12216079 (5) (see all 29)
    oxaliplatin 55.2 5 19296535 (3), 15607932 (1)
    platinum 51.8 12 18636185 (2), 20045993 (2), 19470734 (2), 16775422 (1) (see all 5)
    zinc 43.7 3 9794921 (1), 15703644 (1)
    carboplatin 43.3 10 12869652 (5), 15607932 (1)
    atp 37.5 16 20333758 (2), 11605050 (1), 12426114 (1), 12509969 (1) (see all 10)

    Search CenterWatch for drugs/clinical trials and news about ATP7B 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ATP7B gene (3 alternative transcripts): 
    NM_000053.3  NM_001005918.2  NM_001243182.1  

    Unigene Cluster for ATP7B:

    ATPase, Cu++ transporting, beta polypeptide
    Hs.492280  [show with all ESTs]
    Unigene Representative Sequence: NM_000053
    11 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000242839(uc001vfv.2 uc010tgs.1 uc001vfy.2 uc010adv.2 uc001vfw.2 uc001vfx.2 uc010tgt.1 uc010tgu.1 uc010tgv.1)
    ENST00000482841 ENST00000466629 ENST00000483772 ENST00000400366 ENST00000344297
    ENST00000448424 ENST00000400370 ENST00000418097(uc010tgw.1) ENST00000417240
    ENST00000542656

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    8/22 QIAGEN miScript miRNA Assays for microRNAs that regulate ATP7B (see all 22):
    hsa-let-7d hsa-miR-202 hsa-miR-3138 hsa-let-7c hsa-let-7g hsa-miR-548g hsa-miR-133a hsa-let-7a
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    Additional cDNA sequence: 

    AK302074.1 AK302490.1 BC117200.1 BC143973.1 BC143974.1 BC143975.1 BC143976.1 DQ015922.1 
    L25442.1 U03464.1 U11700.1 

    13 DOTS entries:

    DT.75115355  DT.95158842  DT.441029  DT.120790367  DT.120790421  DT.120790368  DT.95298489  DT.92423664 
    DT.100756494  DT.40122019  DT.100669556  DT.100734907  DT.120790378 

    24/105 AceView cDNA sequences (see all 105):

    AW303610 BM834965 AI125518 CR591822 AA972449 AA932809 AA378967 AA927394 
    CN482447 CR606188 BE501990 BM710907 BX479483 AL543205 BQ083149 N26536 
    AA620862 AW152143 AA333258 AW189768 AU139954 BQ878283 BU682287 BX092362 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ATP7B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CAATATTAGA
    ATP7B Expression
    About this image

    ATP7B expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    2 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    LiverLiver LobuleHepatocytesLiver
    LiverLiver LobuleMature HepatocytesLiver
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 2 LifeMap Cells 
    NameCategory
    PureStem™ progenitor EN13 (Embryonic Progenitor Cell)
    Trophoblast-like cells (Generation of tropho...)

    See ATP7B Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ATP7B

    SOURCE GeneReport for Unigene cluster: Hs.492280

    UniProtKB/Swiss-Prot: ATP7B_HUMAN, P35670
    Tissue specificity: Most abundant in liver and kidney and also found in brain. Isoform 2 is expressed in brain but not
    in liver. The cleaved form WND/140 kDa is found in liver cell lines and other tissues

        SABiosciences Expression via Pathway-Focused PCR Array including ATP7B: 
              Drug Transporters in human mouse rat

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the last universal common ancestor (LUCA).

    Orthologs for ATP7B gene from 8/31 species (see all 31)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves ATP7B1 ATPase, Cu++ transporting, beta polypeptide 70.42(n)
    71.38(a)
      418879  XM_417073.3  XP_417073.3 
    lizard
    (Anolis carolinensis)
    Reptilia ATP7B6
    --
    67(a)
    1 ↔ 1
    1(132817916-132843567)
    zebrafish
    (Danio rerio)
    Actinopterygii atp7b1 ATPase, Cu++ transporting, beta polypeptide (Wilson disease) less 65.72(n)
    65.92(a)
      556499  XM_679323.4  XP_684415.4 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG18863
    ATP71
    copper-exporting ATPase3
    ATP71
    47(a)3
    55.65(n)1
    51.17(a)1
      10F23
    321421  NM_132528.21  NP_572756.31 
    worm
    (Caenorhabditis elegans)
    Secernentea cua-16
    CU (copper) ATPase family member (cua-1)
    42(a)
    1 → many
    III(13439627-13455206)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons RAN11 copper-transporting ATPase RAN1 51.14(n)
    44.51(a)
      834509  NM_123847.2  NP_199292.1 
    rice
    (Oryza sativa)
    Liliopsida AK072990.12   -- 71.67(n)    AK072990.1 
    E. coli
    (Escherichia coli)
    Gamma proteobacteria copA6
    copper transporter
    32(a)
    possible ortholog
    Chromosome(508099-510603)


    ENSEMBL Gene Tree for ATP7B (if available)
    TreeFam Gene Tree for ATP7B (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ATP7B gene
    ATP7A2  
    1 SIMAP similar gene for ATP7B using alignment to 36 protein entries:     ATP7B_HUMAN (see all proteins):
    ATP7A

    ATP7B for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for ATP7B
    PGOHUM00000234894


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1465 NCBI SNPs in ATP7B are shown (see all 1465    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 13 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs732020481,2
    C,Fnon-pathogenic33297491(+) GATGGC/TTTGTC 6 K syn11Minor allele frequency- T:0.01EU 1323
    rs1160914861,2
    Cnon-pathogenic33297500(+) TCGGAC/TGTCAG 6 T syn12Minor allele frequency- T:0.00WA EU 1441
    rs22820571,2
    C,F,A,Hnon-pathogenic33300118(-) GTGAGC/TGTGGC 3 -- int114Minor allele frequency- T:0.48EA NA WA CSA EU 3521
    rs118402241,2
    C,F,A,Hnon-pathogenic33301810(+) ACAGCG/ATCTGC 6 /D syn1 ese39Minor allele frequency- A:0.03NS EA NA EU 2205
    rs1407084921,2
    C,Fnon-pathogenic33301847(+) CTGGAG/ACGAAC 3 -- int11Minor allele frequency- A:0.00EU 1323
    rs18012481,2
    C,Fnon-pathogenic33308826(-) CCCCTG/AGAGAT 6 /L syn120Minor allele frequency- A:0.01NA EA NS MN WA EU 3389
    rs18012471,2
    C,Fnon-pathogenic33308862(-) GCCGCG/ACAGAA 6 /A syn112Minor allele frequency- A:0.03NA NS EA EU 1345
    rs18012461,2
    C,Fnon-pathogenic33308898(-) GCCACG/ACCCAC 6 /T syn1 ese37Minor allele frequency- A:0.06NA EA NS EU 1614
    rs73259831,2
    C,F,Hnon-pathogenic33309018(+) CAGGAC/GAGAGT 3 -- int113Minor allele frequency- G:0.07NS EA NA WA EU 2317
    rs7327741,2
    C,F,O,A,Hnon-pathogenic33312199(-) TCAGAA/GATACT 5 K R mis1 int1 ese353Minor allele frequency- G:0.48EA NA NS MN WA CSA EU 7539

    HapMap Linkage Disequilibrium report for ATP7B (52506805 - 52585630 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for ATP7B: --
    Human Gene Mutation Database (HGMD): ATP7B

    Locus Specific Mutation Databases (LSDB): ATP7B

    SABiosciences Cancer Mutation PCR Assays
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    Oncogenes & Tumor Suppressor Genes 384HC
    Gastric Cancer
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ATP7B
    DNA2.0 Custom Variant and Variant Library Synthesis for ATP7B

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ATP7B for disorders           About GeneDecksing

    OMIM gene information: 606882   
    OMIM disorders: 277900  
    UniProtKB/Swiss-Prot: ATP7B_HUMAN, P35670
  • Defects in ATP7B are the cause of Wilson disease (WD) [MIM:277900]. WD is an autosomal recessive disorder of
  • copper metabolism in which copper cannot be incorporated into ceruloplasmin in liver, and cannot be excreted from the
    liver into the bile. Copper accumulates in the liver and subsequently in the brain and kidney. The disease is
    characterized by neurologic manifestations and signs of cirrhosis

    20/38 diseases for ATP7B (see all 38):    About MalaCards
    wilson disease    hailey-hailey disease    hepatitis    sensorineural hearing loss
    menkes disease    hearing loss    metabolic disorders    liver cirrhosis
    oral squamous cell carcinoma    squamous cell carcinoma    hemolytic anemia    hemochromatosis
    neurodegenerative disease    congenital cataracts    retinopathy of prematurity    parkinson's disease
    liver disease    cataract    carcinoma    ovarian carcinoma

    4 diseases from the University of Copenhagen DISEASES database for ATP7B:
    Wilson disease     Retinopathy of prematurity     Autosomal recessive disease     Menkes disease

    10/23 Novoseek disease relationships for ATP7B gene (see all 23)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    wilson disease 97.9 274 9837819 (4), 12557139 (4), 11231950 (3), 10777157 (2) (see all 99)
    menkes disease 90.8 26 15634671 (2), 7833924 (1), 9359859 (1), 12181646 (1) (see all 21)
    genetic disorder 50.2 5 14709553 (1), 12557139 (1), 14579150 (1), 15519648 (1) (see all 5)
    ovarian carcinoma 40.3 24 15102688 (8), 12216079 (5), 11605050 (1), 12869652 (1) (see all 7)
    cirrhosis 34.7 1 9949209 (1)
    movement disorders 31.1 3 19572946 (3)
    liver damage 31.1 2 16549536 (1), 20453399 (1)
    liver dysfunction 30.8 2 15511628 (1)
    hepatic failure fulminant 22.7 1 10777157 (1)
    chronic liver disease 18.3 1 16423615 (1)

    GeneTests: ATP7B
    Wilson Disease

    Genetic Association Database (GAD): ATP7B
    Human Genome Epidemiology (HuGE) Navigator: ATP7B (38 documents)

    Export disorders for ATP7B gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ATP7B gene, integrated from 9 sources (see all 370):
    (articles sorted by number of sources associating them with ATP7B)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Wilson disease: novel mutations in the ATP7B gene and clinical correlation in Brazilian patients. (PubMed id 15024742)1, 2, 4, 9 Deguti M.M.... Schmidt H.H.-J. (2004)
    2. Correlation of ATP7B genotype with phenotype in Chinese patients with Wilson disease. (PubMed id 14966923)1, 2, 4, 9 Liu X.-Q.... Wang M.-X. (2004)
    3. Mutation analysis of the ATP7B gene and genotype/phenotype correlation in 227 patients with Wilson disease. (PubMed id 15967699)1, 2, 4, 9 Vrabelova S.... Kozak L. (2005)
    4. High prevalence of the H1069Q mutation in East German patients with Wilson disease: rapid detection of mutations by limited sequencing and phenotype-genotype analysis. (PubMed id 11690702)1, 2, 4, 9 Caca K.... Berr F. (2001)
    5. The Wilson disease gene is a copper transporting ATPase with homology to the Menkes disease gene. (PubMed id 8298641)1, 2, 3, 9 Tanzi R.E.... Gilliam T.C. (1993)
    6. The Wilson disease gene is a putative copper transporting P-type ATPase similar to the Menkes gene. (PubMed id 8298639)1, 2, 3 Bull P.C....Cox D.W. (1993)
    7. Copper-dependent interaction of dynactin subunit p62 with the N terminus of ATP7B but not ATP7A. (PubMed id 16554302)1, 2, 9 Lim C.M....La Fontaine S. (2006)
    8. Mutation analysis of Wilson disease in the Spanish population -identification of a prevalent substitution and eight novel mutations in the ATP7B gene. (PubMed id 15952988)1, 2, 9 Margarit E....Ballesta F. (2005)
    9. p.H1069Q mutation in ATP7B and biochemical parameters of copper metabolism and clinical manifestation of Wilson's disease. (PubMed id 16211609)1, 4, 9 Gromadzka G....Czl/onkowska A. (2006)
    10. Frameshift and nonsense mutations in the gene for ATPase7B are associated with severe impairment of copper metabolism and with an early clinical manifestation of Wilson's disease. (PubMed id 16283883)1, 2, 9 Gromadzka G.... Czlonkowska A. (2005)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 540 HGNC: 870 AceView: ATP7B Ensembl:ENSG00000123191 euGenes: HUgn540
    ECgene: ATP7B H-InvDB: ATP7B

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ATP7B Pharmacogenomics, SNPs, Pathways
    GeneReviewshttp://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ATP7B
    Wilson Disease Mutation Databasehttp://www.medicalgenetics.med.ualberta.ca/wilson/index.php

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ATP7B gene:
    Search GeneIP for patents involving ATP7B

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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