ATP6V1G2-DDX39B Gene
protein-coding GIFtS: 21
GCID: GC06M031501
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ATP6V1G2-DDX39B readthrough (non-protein coding)
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Aliases
for ATP6V1G2-DDX39B gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
|---|
| ATP6V1G2-DDX39B Readthrough (Non-Protein Coding)1 2 | | Uncharacterized Protein4 |
| External Ids: | HGNC: 419991 | Entrez Gene: 1005327372 | Ensembl: ENSG000002548707 | UniProtKB: C9JRT24 | UniProtKB: F2Z3074 |
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| | ORGUL members: | |
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| NONCODE:n410604 n410596 | |
Export aliases for ATP6V1G2-DDX39B gene to outside databasesPrevious GC identifer: GC06U902172
Summaries
for ATP6V1G2-DDX39B gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for ATP6V1G2-DDX39B:
This locus represents naturally occurring read-through transcription between the neighboring ATP6V1G2 (ATPase, H+transporting, lysosomal 13kDa, V1 subunit G2) and DDX39B (DEAD box polypeptide 39B) genes located in the majorhistocompatibility complex class III region of chromosome 6. The read-through transcript and is a candidate fornonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. (provided by RefSeq, Feb 2011)
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Genomic Views
for ATP6V1G2-DDX39B gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for ATP6V1G2-DDX39B
Other transcription factors
Search SABiosciences Chromatin IP Primers for ATP6V1G2-DDX39B
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ATP6V1G2-DDX39B |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 6p Ensembl cytogenetic band: 6p21.33 HGNC cytogenetic band: 6p21.33ATP6V1G2-DDX39B Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M031501: view genomic region
(about GC identifiers)
Start:
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31,497,996 bp from pter |
End:
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31,514,385 bp from pter |
Size:
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16,390 bases |
Orientation:
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minus strand |
ORGUL member locations:
Legend (see complete legend)
31497995 31506310 31514625 chr6
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Proteins
for ATP6V1G2-DDX39B gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/TrEMBL: C9JRT2 (See
protein sequence)Recommended Name: Protein ATP6V1G2-DDX39B Size: 133 amino acids; 15280 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: F2Z307 (See
protein sequence) Recommended Name: Protein ATP6V1G2-DDX39B Size: 99 amino acids; 11355 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataATP6V1G2-DDX39B Protein expression data from MOPED and PaxDb: --
ENSEMBL proteins: ENSP00000365356 ENSP00000420191 ENSP00000420093
Human Recombinant Protein Products:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016471 | vacuolar proton-transporting V-type ATPase complex |
-- | -- | | GO:0030285 | integral to synaptic vesicle membrane |
-- | -- |
ATP6V1G2-DDX39B for ontologies About GeneDecksing
ATP6V1G2-DDX39B Antibody Products:
Assay Products for ATP6V1G2-DDX39B: |
Protein
Domains /
Families
for ATP6V1G2-DDX39B gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ATP6V1G2-DDX39B for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry C9JRT2Graphical View of Domain Structure for InterPro Entry F2Z307ProtoNet protein and cluster: C9JRT2 |
Function
for ATP6V1G2-DDX39B gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ATP6V1G2-DDX39B |
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005515 | protein binding |
-- | -- | | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism |
-- | -- | | GO:0016820 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances |
-- | -- | | GO:0016887 | ATPase activity |
-- | -- |
ATP6V1G2-DDX39B for ontologies About GeneDecksing
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Pathways & Interactions
for ATP6V1G2-DDX39B gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ATP6V1G2-DDX39B
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006200 | ATP catabolic process |
-- | -- | | GO:0015992 | proton transport |
-- | -- |
ATP6V1G2-DDX39B for ontologies About GeneDecksing
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Drugs & Compounds
for ATP6V1G2-DDX39B gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for ATP6V1G2-DDX39B
Search CenterWatch for drugs/clinical trials and news about ATP6V1G2-DDX39B 
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Transcripts
for ATP6V1G2-DDX39B gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
3 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000376185(uc003ntv.3 uc011dnq.1) ENST00000480131 ENST00000475917
GeneLoc Exon Structure
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Expression
for ATP6V1G2-DDX39B gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ATP6V1G2-DDX39B expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image SABiosciences Custom PCR Arrays for ATP6V1G2-DDX39B
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat ATP6V1G2-DDX39B | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ATP6V1G2-DDX39B | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ATP6V1G2-DDX39B | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ATP6V1G2-DDX39B |
Orthologs
for ATP6V1G2-DDX39B gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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This gene was present in the common ancestor of eukaryotes.
Orthologs for ATP6V1G2-DDX39B gene from 5/19 species (see all 19) About this table
ENSEMBL Gene Tree for ATP6V1G2-DDX39B (if available)
TreeFam Gene Tree for ATP6V1G2-DDX39B (if available) |
Paralogs
for ATP6V1G2-DDX39B gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for ATP6V1G2-DDX39B gene
- ATP6V1G32 ATP6V1G22 ATP6V1G12
3 SIMAP similar genes for ATP6V1G2-DDX39B using alignment to 2 protein entries: C9JRT2_HUMAN (see all proteins):ATP6V1G2 ATP6V1G1 ATP6V1G3
ATP6V1G2-DDX39B for paralogs About GeneDecksing
|
Genomic Variants
for ATP6V1G2-DDX39B gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
| | SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for ATP6V1G2-DDX39B gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
ATP6V1G2-DDX39B for disorders About GeneDecksing
5  diseases for ATP6V1G2-DDX39B: About MalaCardsdilated cardiomyopathy hepatitis c cardiomyopathy neurodegeneration
hepatitis
Export disorders for ATP6V1G2-DDX39B gene to outside databases
|
Publications
for ATP6V1G2-DDX39B gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ATP6V1G2-DDX39B gene integrated from 9 sources:
(articles sorted by number of sources associating them with ATP6V1G2-DDX39B) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PubMed id 20967262)1 Prakash T....Taylor T.D. (2010)
- The haplotype block, NFKBIL1-ATP6V1G2-BAT1-MICB-MICA, within the class III-class I boundary region of the human major histocompatibility complex may control susceptibility to hepatitis C virus-associated dilated cardiomyopathy. (PubMed id 16101831)1 Shichi D....Inoko H. (2005)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
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External Searches for ATP6V1G2-DDX39B gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
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Genome Databases showing ATP6V1G2-DDX39B gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ATP6V1G2-DDX39B gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ATP6V1G2-DDX39B gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for ATP6V1G2-DDX39B gene:
Search GeneIP for patents involving ATP6V1G2-DDX39B
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ATP6V1G2-DDX39B gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ATP6V1G2-DDX39B | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ATP6V1G2-DDX39B | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ATP6V1G2-DDX39B | | | Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ATP6V1G2-DDX39B | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ATP6V1G2-DDX39B | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ATP6V1G2-DDX39B |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ATP6V1G2-DDX39B |
|  |  |  | | | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat ATP6V1G2-DDX39B |
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Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013
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