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Aliases for ATP6V1G2-DDX39B Gene

Subcategory (RNA class) for ATP6V1G2-DDX39B Gene


Quality Score for this RNA gene is


Aliases for ATP6V1G2-DDX39B Gene

  • ATP6V1G2-DDX39B Readthrough (NMD Candidate) 2 3 5

External Ids for ATP6V1G2-DDX39B Gene

Previous GeneCards Identifiers for ATP6V1G2-DDX39B Gene

  • GC06U902172
  • GC06M031501
  • GC06M031523
  • GC06M031532
  • GC06M031545

Summaries for ATP6V1G2-DDX39B Gene

Entrez Gene Summary for ATP6V1G2-DDX39B Gene

  • This locus represents naturally occurring read-through transcription between the neighboring ATP6V1G2 (ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2) and DDX39B (DEAD box polypeptide 39B) genes located in the major histocompatibility complex class III region of chromosome 6. The read-through transcript and is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Feb 2011]

GeneCards Summary for ATP6V1G2-DDX39B Gene

ATP6V1G2-DDX39B (ATP6V1G2-DDX39B Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class. GO annotations related to this gene include hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances. An important paralog of this gene is ATP6V1G3.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP6V1G2-DDX39B Gene

Genomics for ATP6V1G2-DDX39B Gene

Regulatory Elements for ATP6V1G2-DDX39B Gene

Promoters for ATP6V1G2-DDX39B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ATP6V1G2-DDX39B on UCSC Golden Path with GeneCards custom track

Genomic Location for ATP6V1G2-DDX39B Gene

31,530,219 bp from pter
31,546,848 bp from pter
16,630 bases
Minus strand

Genomic View for ATP6V1G2-DDX39B Gene

Genes around ATP6V1G2-DDX39B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP6V1G2-DDX39B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP6V1G2-DDX39B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for ATP6V1G2-DDX39B Gene

  • Protein details for ATP6V1G2-DDX39B Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    Protein ATP6V1G2-DDX39B
    Protein Accession:

    Protein attributes for ATP6V1G2-DDX39B Gene

    99 amino acids
    Molecular mass:
    11355 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ATP6V1G2-DDX39B Gene

Proteomics data for ATP6V1G2-DDX39B Gene at MOPED

Post-translational modifications for ATP6V1G2-DDX39B Gene

No Post-translational modifications

Other Protein References for ATP6V1G2-DDX39B Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for ATP6V1G2-DDX39B Gene

Domains & Families for ATP6V1G2-DDX39B Gene

Protein Domains for ATP6V1G2-DDX39B Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ATP6V1G2-DDX39B: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP6V1G2-DDX39B Gene

Function for ATP6V1G2-DDX39B Gene

Phenotypes for ATP6V1G2-DDX39B Gene

genes like me logo Genes that share phenotypes with ATP6V1G2-DDX39B: view

miRNA for ATP6V1G2-DDX39B Gene

miRTarBase miRNAs that target ATP6V1G2-DDX39B

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ATP6V1G2-DDX39B Gene

Localization for ATP6V1G2-DDX39B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ATP6V1G2-DDX39B Gene

Pathways & Interactions for ATP6V1G2-DDX39B Gene

SuperPathways for ATP6V1G2-DDX39B Gene

No Data Available

Interacting Proteins for ATP6V1G2-DDX39B Gene

Gene Ontology (GO) - Biological Process for ATP6V1G2-DDX39B Gene


No data available for Pathways by source and SIGNOR curated interactions for ATP6V1G2-DDX39B Gene

Drugs & Compounds for ATP6V1G2-DDX39B Gene

No Compound Related Data Available

Transcripts for ATP6V1G2-DDX39B Gene

mRNA/cDNA for ATP6V1G2-DDX39B Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP6V1G2-DDX39B Gene

No ASD Table

Relevant External Links for ATP6V1G2-DDX39B Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ATP6V1G2-DDX39B Gene

mRNA expression in normal human tissues for ATP6V1G2-DDX39B Gene

genes like me logo Genes that share expression patterns with ATP6V1G2-DDX39B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for ATP6V1G2-DDX39B Gene

Orthologs for ATP6V1G2-DDX39B Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ATP6V1G2-DDX39B Gene

Organism Taxonomy Gene Similarity Type Details
(Canis familiaris)
Mammalia -- 36
  • 30 (a)
(Monodelphis domestica)
Mammalia -- 36
  • 57 (a)
(Mus musculus)
Mammalia Gm5283 36
  • 43 (a)
(Anolis carolinensis)
Reptilia -- 36
  • 49 (a)
fruit fly
(Drosophila melanogaster)
Insecta Vha13 36
  • 37 (a)
(Caenorhabditis elegans)
Secernentea vha-10 36
  • 37 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes VMA10 36
  • 25 (a)
SUB2 38
Species with no ortholog for ATP6V1G2-DDX39B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for ATP6V1G2-DDX39B Gene

Gene Tree for ATP6V1G2-DDX39B (if available)
Gene Tree for ATP6V1G2-DDX39B (if available)

Paralogs for ATP6V1G2-DDX39B Gene

Paralogs for ATP6V1G2-DDX39B Gene

(3) SIMAP similar genes for ATP6V1G2-DDX39B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ATP6V1G2-DDX39B: view

Variants for ATP6V1G2-DDX39B Gene

Structural Variations from Database of Genomic Variants (DGV) for ATP6V1G2-DDX39B Gene

Variant ID Type Subtype PubMed ID
esv690 CNV CNV 17122850
dgv1042e201 CNV Deletion 23290073
dgv213e55 CNV Gain 17911159
essv13266 CNV CNV 17122850
dgv6580n71 CNV Gain 21882294
nsv830627 CNV Loss 17160897
nsv470809 CNV Loss 18288195

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Variation tolerance and Relevant External Links for ATP6V1G2-DDX39B Gene

Disorders for ATP6V1G2-DDX39B Gene

Relevant External Links for ATP6V1G2-DDX39B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for ATP6V1G2-DDX39B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP6V1G2-DDX39B Gene

Publications for ATP6V1G2-DDX39B Gene

  1. A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients. (PMID: 21912425) Tohkin M. … Ikezawa Z. (Pharmacogenomics J. 2013) 3 67
  2. Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis. (PMID: 22197932) Paternoster L. … Weidinger S. (Nat. Genet. 2012) 3
  3. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  4. The haplotype block, NFKBIL1-ATP6V1G2-BAT1-MICB-MICA, within the class III-class I boundary region of the human major histocompatibility complex may control susceptibility to hepatitis C virus-associated dilated cardiomyopathy. (PMID: 16101831) Shichi D. … Inoko H. (Tissue Antigens 2005) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ATP6V1G2-DDX39B Gene

Sources for ATP6V1G2-DDX39B Gene