Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ATP6V1G2-DDX39B Gene

Subcategory (RNA class) for ATP6V1G2-DDX39B Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for ATP6V1G2-DDX39B Gene

  • ATP6V1G2-DDX39B Readthrough (NMD Candidate) 2 3

External Ids for ATP6V1G2-DDX39B Gene

Summaries for ATP6V1G2-DDX39B Gene

Entrez Gene Summary for ATP6V1G2-DDX39B Gene

  • This locus represents naturally occurring read-through transcription between the neighboring ATP6V1G2 (ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2) and DDX39B (DEAD box polypeptide 39B) genes located in the major histocompatibility complex class III region of chromosome 6. The read-through transcript and is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Feb 2011]

GeneCards Summary for ATP6V1G2-DDX39B Gene

ATP6V1G2-DDX39B (ATP6V1G2-DDX39B Readthrough (NMD Candidate)) is a RNA Gene, and belongs to ncRNA RNA class. Diseases associated with ATP6V1G2-DDX39B include hepatitis c virus and atopic dermatitis. An important paralog of this gene is ATP6V1G3.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP6V1G2-DDX39B Gene

Genomics for ATP6V1G2-DDX39B Gene

Genomic Location for ATP6V1G2-DDX39B Gene

Start:
31,530,219 bp from pter
End:
31,546,848 bp from pter
Size:
16,630 bases
Orientation:
Minus strand

Genomic View for ATP6V1G2-DDX39B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ATP6V1G2-DDX39B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements for ATP6V1G2-DDX39B Gene

Proteins for ATP6V1G2-DDX39B Gene

  • Protein details for ATP6V1G2-DDX39B Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    F2Z307-F2Z307
    Recommended name:
    Protein ATP6V1G2-DDX39B
    Protein Accession:
    F2Z307
    Secondary Accessions:

    Protein attributes for ATP6V1G2-DDX39B Gene

    Size:
    99 amino acids
    Molecular mass:
    11355 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ATP6V1G2-DDX39B Gene

Proteomics data for ATP6V1G2-DDX39B Gene at MOPED

Post-translational modifications for ATP6V1G2-DDX39B Gene

No Post-translational modifications

Other Protein References for ATP6V1G2-DDX39B Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for ATP6V1G2-DDX39B Gene

Domains for ATP6V1G2-DDX39B Gene

Protein Domains for ATP6V1G2-DDX39B Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with ATP6V1G2-DDX39B: view

No data available for Gene Families and UniProtKB/Swiss-Prot for ATP6V1G2-DDX39B Gene

Function for ATP6V1G2-DDX39B Gene

Gene Ontology (GO) - Molecular Function for ATP6V1G2-DDX39B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances --
genes like me logo Genes that share ontologies with ATP6V1G2-DDX39B: view

miRNA for ATP6V1G2-DDX39B Gene

miRTarBase miRNAs that target ATP6V1G2-DDX39B

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ATP6V1G2-DDX39B Gene

Localization for ATP6V1G2-DDX39B Gene

Gene Ontology (GO) - Cellular Components for ATP6V1G2-DDX39B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016471 vacuolar proton-transporting V-type ATPase complex --
genes like me logo Genes that share ontologies with ATP6V1G2-DDX39B: view

Pathways for ATP6V1G2-DDX39B Gene

SuperPathways for ATP6V1G2-DDX39B Gene

No Data Available

Interacting Proteins for ATP6V1G2-DDX39B Gene

Gene Ontology (GO) - Biological Process for ATP6V1G2-DDX39B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015992 proton transport --
GO:0055085 transmembrane transport --
genes like me logo Genes that share ontologies with ATP6V1G2-DDX39B: view

No data available for Pathways by source for ATP6V1G2-DDX39B Gene

Transcripts for ATP6V1G2-DDX39B Gene

mRNA/cDNA for ATP6V1G2-DDX39B Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP6V1G2-DDX39B Gene

No ASD Table

Relevant External Links for ATP6V1G2-DDX39B Gene

GeneLoc Exon Structure for
ATP6V1G2-DDX39B
ECgene alternative splicing isoforms for
ATP6V1G2-DDX39B

Expression for ATP6V1G2-DDX39B Gene

mRNA expression in normal human tissues for ATP6V1G2-DDX39B Gene

genes like me logo Genes that share expressions with ATP6V1G2-DDX39B: view

Orthologs for ATP6V1G2-DDX39B Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ATP6V1G2-DDX39B Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia -- 37
  • 30 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm5283 37
  • 43 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 57 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 49 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Vha13 37
  • 37 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea vha-10 37
  • 37 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SUB2 39
VMA10 37
  • 25 (a)
OneToMany
Species with no ortholog for ATP6V1G2-DDX39B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for ATP6V1G2-DDX39B Gene

ENSEMBL:
Gene Tree for ATP6V1G2-DDX39B (if available)
TreeFam:
Gene Tree for ATP6V1G2-DDX39B (if available)

Paralogs for ATP6V1G2-DDX39B Gene

Paralogs for ATP6V1G2-DDX39B Gene

Selected SIMAP similar genes for ATP6V1G2-DDX39B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ATP6V1G2-DDX39B: view

Variants for ATP6V1G2-DDX39B Gene

Structural Variations from Database of Genomic Variants (DGV) for ATP6V1G2-DDX39B Gene

Variant ID Type Subtype PubMed ID
esv690 CNV CNV 17122850
dgv1042e201 CNV Deletion 23290073
dgv213e55 CNV Gain 17911159
essv13266 CNV CNV 17122850
dgv6580n71 CNV Gain 21882294
nsv830627 CNV Loss 17160897
nsv470809 CNV Loss 18288195

Relevant External Links for ATP6V1G2-DDX39B Gene

HapMap Linkage Disequilibrium report
ATP6V1G2-DDX39B

No data available for Sequence variations from dbSNP and Humsavar for ATP6V1G2-DDX39B Gene

Disorders for ATP6V1G2-DDX39B Gene

genes like me logo Genes that share disorders with ATP6V1G2-DDX39B: view

No data available for UniProtKB/Swiss-Prot for ATP6V1G2-DDX39B Gene

Publications for ATP6V1G2-DDX39B Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. The haplotype block, NFKBIL1-ATP6V1G2-BAT1-MICB-MICA, within the class III-class I boundary region of the human major histocompatibility complex may control susceptibility to hepatitis C virus-associated dilated cardiomyopathy. (PMID: 16101831) Shichi D. … Inoko H. (Tissue Antigens 2005) 3
  3. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  4. A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients. (PMID: 21912425) Tohkin M. … Ikezawa Z. (Pharmacogenomics J. 2013) 3
  5. Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis. (PMID: 22197932) Paternoster L. … Weidinger S. (Nat. Genet. 2012) 3

Products for ATP6V1G2-DDX39B Gene

Sources for ATP6V1G2-DDX39B Gene

Back to Top

Content