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Aliases for ATP6V1B1-AS1 Gene

Subcategory (RNA class) for ATP6V1B1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ATP6V1B1-AS1 Gene

  • ATP6V1B1 Antisense RNA 1 2 3 5

External Ids for ATP6V1B1-AS1 Gene

Summaries for ATP6V1B1-AS1 Gene

GeneCards Summary for ATP6V1B1-AS1 Gene

ATP6V1B1-AS1 (ATP6V1B1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP6V1B1-AS1 Gene

Genomics for ATP6V1B1-AS1 Gene

Regulatory Elements for ATP6V1B1-AS1 Gene

Enhancers for ATP6V1B1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G070303 1.1 Ensembl ENCODE 10.6 +644.6 644611 0.8 ARID4B RAD21 RFX5 ZNF23 EGR1 ZNF143 ZMIZ1 CREM MIXL1 EGR2 ATP6V1B1-AS1 VAX2 FAM136A BRD7P6
GH02G070976 1 ENCODE 11.3 -29.3 -29316 3.8 PKNOX1 ATF1 ZFP64 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 TEX261 ATP6V1B1-AS1 VAX2 ANKRD53 NAGK OR7E62P CLEC4F LOC105374795
GH02G070919 0.9 ENCODE 12.3 +28.6 28586 0.2 FOXA2 ARID4B SIN3A ZNF48 ZNF143 MXD4 REST PPARG KAT8 ZNF579 ATP6V1B1-AS1 ADD2 CD207 ATP6V1B1 VAX2
GH02G071047 1 ENCODE 10.7 -100.3 -100331 2.8 HDGF ARID4B SIN3A ZNF48 ZNF2 SLC30A9 ZNF121 GLIS2 ZNF143 FOS NAGK OR7E62P ATP6V1B1-AS1 TRE-CTC15-1
GH02G070921 0.8 ENCODE 12.3 +26.5 26461 1.0 ATF1 ZBTB21 JUN ETV1 ZBTB40 ZIC2 HIC1 POLR2A ZNF366 ZNF600 ATP6V1B1-AS1 VAX2 ADD2 ATP6V1B1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ATP6V1B1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ATP6V1B1-AS1 Gene

Chromosome:
2
Start:
70,941,817 bp from pter
End:
70,948,611 bp from pter
Size:
6,795 bases
Orientation:
Minus strand

Genomic View for ATP6V1B1-AS1 Gene

Genes around ATP6V1B1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP6V1B1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP6V1B1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP6V1B1-AS1 Gene

Proteins for ATP6V1B1-AS1 Gene

Post-translational modifications for ATP6V1B1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP6V1B1-AS1 Gene

Domains & Families for ATP6V1B1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP6V1B1-AS1 Gene

Function for ATP6V1B1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP6V1B1-AS1 Gene

Localization for ATP6V1B1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ATP6V1B1-AS1 Gene

Pathways & Interactions for ATP6V1B1-AS1 Gene

SuperPathways for ATP6V1B1-AS1 Gene

No Data Available

Interacting Proteins for ATP6V1B1-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP6V1B1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP6V1B1-AS1 Gene

Drugs & Compounds for ATP6V1B1-AS1 Gene

No Compound Related Data Available

Transcripts for ATP6V1B1-AS1 Gene

mRNA/cDNA for ATP6V1B1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP6V1B1-AS1 Gene

No ASD Table

Relevant External Links for ATP6V1B1-AS1 Gene

GeneLoc Exon Structure for
ATP6V1B1-AS1
ECgene alternative splicing isoforms for
ATP6V1B1-AS1

Expression for ATP6V1B1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATP6V1B1-AS1 Gene

genes like me logo Genes that share expression patterns with ATP6V1B1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP6V1B1-AS1 Gene

Orthologs for ATP6V1B1-AS1 Gene

Evolution for ATP6V1B1-AS1 Gene

ENSEMBL:
Gene Tree for ATP6V1B1-AS1 (if available)
TreeFam:
Gene Tree for ATP6V1B1-AS1 (if available)

No data available for Orthologs for ATP6V1B1-AS1 Gene

Paralogs for ATP6V1B1-AS1 Gene

No data available for Paralogs for ATP6V1B1-AS1 Gene

Variants for ATP6V1B1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP6V1B1-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs782666539 Uncertain significance 70,943,648(+) CCGCC(C/T)CTCCC intron-variant, upstream-variant-2KB
rs144845223 Benign 70,943,683(+) GTGAA(A/C/T)GGGCC intron-variant, upstream-variant-2KB, reference, synonymous-codon
rs2266918 Benign 70,943,677(+) TGCAG(C/T)GTGAA intron-variant, upstream-variant-2KB, reference, synonymous-codon
rs1000171223 -- 70,945,436(+) CTCTG(A/C)GATAG intron-variant
rs1000559497 -- 70,943,805(+) CTTTC(C/T)CTCCA intron-variant, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for ATP6V1B1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1004459 CNV loss 25217958
nsv1013232 CNV gain 25217958
nsv1014516 CNV gain 25217958
nsv1146915 OTHER inversion 26484159

Relevant External Links for ATP6V1B1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP6V1B1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP6V1B1-AS1 Gene

Disorders for ATP6V1B1-AS1 Gene

Relevant External Links for ATP6V1B1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ATP6V1B1-AS1

No disorders were found for ATP6V1B1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP6V1B1-AS1 Gene

Publications for ATP6V1B1-AS1 Gene

No publications were found for ATP6V1B1-AS1 Gene.

Products for ATP6V1B1-AS1 Gene

Sources for ATP6V1B1-AS1 Gene

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