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Aliases for ATP6V0E2-AS1 Gene

Subcategory (RNA class) for ATP6V0E2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ATP6V0E2-AS1 Gene

  • ATP6V0E2 Antisense RNA 1 2 3 5
  • ATP6V0E2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ATP6V0E2-AS1 Gene

Previous GeneCards Identifiers for ATP6V0E2-AS1 Gene

  • GC07M149566

Summaries for ATP6V0E2-AS1 Gene

GeneCards Summary for ATP6V0E2-AS1 Gene

ATP6V0E2-AS1 (ATP6V0E2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP6V0E2-AS1 Gene

Genomics for ATP6V0E2-AS1 Gene

Regulatory Elements for ATP6V0E2-AS1 Gene

Enhancers for ATP6V0E2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F149863 1.1 Ensembl ENCODE 23.6 +12.7 12712 8.1 PKNOX1 ZNF133 PTRF ZNF766 KLF13 ZNF263 HDAC8 CREB3 TFDP1 ZNF589 ATP6V0E2 ATP6V0E2-AS1 ZNF862 SSPO ENSG00000273011 PIR59309
GH07F149883 0.8 Ensembl ENCODE 23.4 -4.1 -4094 3.4 CBX3 ZFP64 ARID4B DMAP1 ZNF2 RAD21 YY1 GATA2 CREM ZNF362 ATP6V0E2 ATP6V0E2-AS1 SSPO ZNF862 ENSG00000273011 PIR51338
GH07F148972 0.4 Ensembl 11.2 +908.0 908002 0.5 PKNOX1 MCM3 ZNF493 ZFP64 ZBTB11 ZNF140 ZMYM3 CEBPB ZBTB8A REST ZNF767P ZNF862 LOC155060 ZNF783 ZNF212 ENSG00000271664 ATP6V0E2-AS1 ZNF777 RN7SL521P ZNF398
GH07F150364 0.8 FANTOM5 ENCODE 11.2 -487.9 -487864 7.0 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF767P ENSG00000244151 REPIN1 ZNF777 ZNF862 ENSG00000243433 ATP6V0E2-AS1 ENSG00000273419 LRRC61 GIMAP2
GH07F150662 1.4 FANTOM5 Ensembl ENCODE 11.2 -786.6 -786558 8.5 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ENSG00000244151 ZNF862 GIMAP1 GIMAP4 GIMAP6 GIMAP2 GIMAP8 ENSG00000243433 GIMAP5 ATP6V0E2-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ATP6V0E2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ATP6V0E2-AS1 Gene

Chromosome:
7
Start:
149,867,694 bp from pter
End:
149,880,610 bp from pter
Size:
12,917 bases
Orientation:
Minus strand

Genomic View for ATP6V0E2-AS1 Gene

Genes around ATP6V0E2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP6V0E2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP6V0E2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP6V0E2-AS1 Gene

Proteins for ATP6V0E2-AS1 Gene

Post-translational modifications for ATP6V0E2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP6V0E2-AS1 Gene

Domains & Families for ATP6V0E2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP6V0E2-AS1 Gene

Function for ATP6V0E2-AS1 Gene

Phenotypes for ATP6V0E2-AS1 Gene

GenomeRNAi human phenotypes for ATP6V0E2-AS1:
genes like me logo Genes that share phenotypes with ATP6V0E2-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP6V0E2-AS1 Gene

Localization for ATP6V0E2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ATP6V0E2-AS1 Gene

Pathways & Interactions for ATP6V0E2-AS1 Gene

SuperPathways for ATP6V0E2-AS1 Gene

No Data Available

Interacting Proteins for ATP6V0E2-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP6V0E2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP6V0E2-AS1 Gene

Transcripts for ATP6V0E2-AS1 Gene

mRNA/cDNA for ATP6V0E2-AS1 Gene

Unigene Clusters for ATP6V0E2-AS1 Gene

ATP6V0E2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ATP6V0E2-AS1 Gene

No ASD Table

Relevant External Links for ATP6V0E2-AS1 Gene

GeneLoc Exon Structure for
ATP6V0E2-AS1
ECgene alternative splicing isoforms for
ATP6V0E2-AS1

Expression for ATP6V0E2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ATP6V0E2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ATP6V0E2-AS1 Gene

This gene is overexpressed in Brain - Hippocampus (x4.2).

SOURCE GeneReport for Unigene cluster for ATP6V0E2-AS1 Gene:

Hs.744860
genes like me logo Genes that share expression patterns with ATP6V0E2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ATP6V0E2-AS1 Gene

Orthologs for ATP6V0E2-AS1 Gene

Evolution for ATP6V0E2-AS1 Gene

ENSEMBL:
Gene Tree for ATP6V0E2-AS1 (if available)
TreeFam:
Gene Tree for ATP6V0E2-AS1 (if available)

No data available for Orthologs for ATP6V0E2-AS1 Gene

Paralogs for ATP6V0E2-AS1 Gene

No data available for Paralogs for ATP6V0E2-AS1 Gene

Variants for ATP6V0E2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP6V0E2-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10226047 -- 149,868,321(+) GGAGC(C/T)AGAAG nc-transcript-variant
rs10240203 -- 149,875,753(+) CTCTT(C/G)AAAGG intron-variant, upstream-variant-2KB
rs10251487 -- 149,874,740(+) ctgca(C/T)gttcc intron-variant, upstream-variant-2KB
rs10269423 -- 149,868,489(+) CTCCT(A/C)ACTGT nc-transcript-variant
rs10269629 -- 149,868,615(+) CAGCT(C/T)CTGCC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for ATP6V0E2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv11717n54 CNV gain 21841781
dgv6751n100 CNV gain 25217958
dgv6752n100 CNV gain 25217958
dgv845n27 CNV gain 19166990
esv2759571 CNV gain 17122850
esv3576480 CNV gain 25503493
esv3615438 CNV gain 21293372
esv3615439 CNV gain 21293372
esv3891234 CNV gain 25118596
nsv1029484 CNV gain 25217958
nsv1033095 CNV gain 25217958
nsv1161666 CNV duplication 26073780
nsv471647 CNV gain 15918152
nsv519323 CNV loss 19592680
nsv521861 CNV loss 19592680
nsv8229 CNV gain+loss 18304495
nsv831184 CNV gain 17160897
nsv831185 CNV gain 17160897

Relevant External Links for ATP6V0E2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP6V0E2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP6V0E2-AS1 Gene

Disorders for ATP6V0E2-AS1 Gene

Relevant External Links for ATP6V0E2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ATP6V0E2-AS1

No disorders were found for ATP6V0E2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP6V0E2-AS1 Gene

Publications for ATP6V0E2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ATP6V0E2-AS1 Gene

Sources for ATP6V0E2-AS1 Gene

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