Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ATP6V0E2 Gene

protein-coding   GIFtS: 53
GCID: GC07P149570

ATPase, H+ transporting V0 subunit e2

(Previous names: chromosome 7 open reading frame 32, ATPase, H+ transporting...)
(Previous symbols: C7orf32, ATP6V0E2L)
 Explore 7 diseases affiliated with
ATP6V0E2 via our new
 Human Malady Compendium 
Biological research products
for ATP6V0E2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
ATPase, H+ Transporting V0 Subunit E21 2     ATPase, H+ Transporting V0 Subunit E Isoform 2-Like (Rat)1
ATP6V0E2L1 2 3     Chromosome 7 Open Reading Frame 321
C7orf321 2 3     H+-ATPase E2 Subunit2
Lysosomal 9 KDa H(+)-Transporting ATPase V0 Subunit E22 3     V-Type Proton ATPase Subunit E 22
Vacuolar Proton Pump Subunit E 22 3     Vacuolar Proton-ATPase Subunit2
V-ATPase Subunit E 22 3     

External Ids:    HGNC: 217231   Entrez Gene: 1550662   Ensembl: ENSG000001711307   OMIM: 6110195   UniProtKB: Q8NHE43   

Export aliases for ATP6V0E2 gene to outside databases

Previous GC identifers: GC07P149201 GC07P143645


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ATP6V0E2:
Multisubunit vacuolar-type proton pumps, or H(+)-ATPases, acidify various intracellular compartments, such as vacuoles,
clathrin-coated and synaptic vesicles, endosomes, lysosomes, and chromaffin granules. H(+)-ATPases are also found in
plasma membranes of specialized cells, where they play roles in urinary acidification, bone resorption, and sperm
maturation. Multiple subunits form H(+)-ATPases, with proteins of the V1 class hydrolyzing ATP for energy to transport
H+, and proteins of the V0 class forming an integral membrane domain through which H+ is transported. ATP6V0E2 encodes
an isoform of the H(+)-ATPase V0 e subunit, an essential proton pump component (Blake-Palmer et al., 2007 (PubMed
17350184)).(supplied by OMIM, Mar 2008)

UniProtKB/Swiss-Prot: VA0E2_HUMAN, Q8NHE4
Function: Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (By
similarity)

summary for ATP6V0E2:
H+-ATPase (also known as vacuolar ATPase, V-ATPase) is a enzyme transporter that functions to acidify
intracellular compartments in eukaryotic cells. It is ubiquitously expressed and is present in endomembrane
organelles such as vacuoles, lysosomes, endosomes, the Golgi apparatus, chromaffin granules and coated
vesicles, as well as in the plasma membrane. H+-ATPase is a multisubunit complex composed of two domains.
The V1 domain is responsible for ATP hydrolysis and the V0 domain is responsible for protein translocation.
There are two main mechanisms of regulating H+-ATPase activity; recycling of H+-ATPase-containing vesicles
to and from the plasma membrane and glucose-sensitive assembly/disassembly of the holoenzyme complex. These
transporters play an important role in processes such as receptor-mediated endocytosis, protein degradation
and coupled transport. They have a function in bone reabsorption and mutations in the A3 gene cause
recessive osteopetrosis. Furthermore, H+-ATPases have been implicated in tumor metastasis and regulation of
sperm motility and maturation.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000007.13  NC_018918.1  NT_007914.15  NT_079596.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ATP6V0E2 gene promoter:
         Oct-B1   NF-1/L   NF-1   HOXA3   AML1a   MyoD   Arnt   RORalpha1   ATF6   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 4): ATP6V0E2 promoter sequence
   Search SABiosciences Chromatin IP Primers for ATP6V0E2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ATP6V0E2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q36.1   Ensembl cytogenetic band:  7q36.1   HGNC cytogenetic band: 7q36.1

ATP6V0E2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ATP6V0E2 gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07P149570:  view genomic region     (about GC identifiers)

Start:
149,570,057 bp from pter      End:
149,577,787 bp from pter
Size:
7,731 bases      Orientation:
plus strand

1 alternative location:
Chr7+,CRA_TCAG 148,908,071-148,915,657     

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: VA0E2_HUMAN, Q8NHE4 (See protein sequence)
Recommended Name: V-type proton ATPase subunit e 2  
Size: 81 amino acids; 9184 Da
Subunit: Composed of at least 10 subunits
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Sequence caution: Sequence=AAP97693.1; Type=Frameshift; Positions=80, 108; Sequence=AAQ96859.1; Type=Erroneous gene
model prediction; Sequence=BAC05292.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Sequence=CAE45916.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Secondary accessions: A2T863 A2T8L7 B5MDP5 J3KQW7 Q6MZW1 Q75L47 Q7Z4R7 Q8N7I8
Alternative splicing: 4 isoforms:  Q8NHE4-1   Q8NHE4-2   Q8NHE4-3   Q8NHE4-4   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ATP6V0E2: NX_Q8NHE4

ATP6V0E2 Protein expression data from MOPED and PaxDb:    About this image 
ATP6V0E2 Protein Expression

REFSEQ proteins (2 alternative transcripts): 
NP_001094062.1  NP_660265.2  

ENSEMBL proteins: 
 ENSP00000411672   ENSP00000410220   ENSP00000420012   ENSP00000417939   ENSP00000420679  
 ENSP00000396148  
Reactome Protein details: Q8NHE4
Human Recombinant Protein Products for ATP6V0E2: 
Browse Purified and Recombinant Proteins at EMD Millipore
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
OriGene Protein Over-expression Lysate: ATP6V0E2
OriGene Custom Protein Services for ATP6V0E2 
GenScript Custom Purified and Recombinant Proteins Services for ATP6V0E2
Novus Biologicals ATP6V0E2 Lysate
Browse Sino Biological Recombinant Proteins
Browse ProSpec Recombinant Proteins
Uscn Proteins for ATP6V0E2

Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005773vacuole ----
GO:0010008endosome membrane TAS--
GO:0016021integral to membrane NAS17350184
GO:0030670phagocytic vesicle membrane TAS--
GO:0033179proton-transporting V-type ATPase, V0 domain IEA--

ATP6V0E2 for ontologies           About GeneDecksing



ATP6V0E2 Antibody Products: 
Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Browse R&D Systems for Antibodies
Browse OriGene Antibodies
OriGene Custom Antibody Services for ATP6V0E2 
GenScript Superior Antibodies for ATP6V0E2
Novus Biologicals ATP6V0E2 Antibody
Search for Antibodies for ATP6V0E2 at Abcam  
Uscn Antibodies for ATP6V0E2
Search ThermoFisher Antibodies for ATP6V0E2

Assay Products for ATP6V0E2: 
Browse Kits and Assays available from EMD Millipore
OriGene Custom Immunoassay Development
Browse OriGene Fluorogenic Cell Assay Kits
Browse R&D Systems for biochemical assays
GenScript Custom Assay Services for ATP6V0E2
Browse Enzo Life Sciences for kits & assays
Uscn ELISAs and CLIAs for ATP6V0E2


(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ATP6V0E2 for domains           About GeneDecksing

2 InterPro domains/families:
 IPR008389 ATPase_V0-cplx_e1/e2_su
 IPR017385 ATPase_V0-cplx_e1/e2_su_met

Graphical View of Domain Structure for InterPro Entry Q8NHE4

ProtoNet protein and cluster: Q8NHE4

1 Blocks protein family: IPB008389 ATP synthase subunit H

UniProtKB/Swiss-Prot: VA0E2_HUMAN, Q8NHE4
Similarity: Belongs to the V-ATPase e1/e2 subunit family


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Molecular Function:

     UniProtKB/Swiss-Prot Summary: VA0E2_HUMAN, Q8NHE4
Function: Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (By
similarity)

     Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0015078hydrogen ion transmembrane transporter activity IEA--
GO:0042625ATPase activity, coupled to transmembrane movement of ions ISS--
     
ATP6V0E2 for ontologies           About GeneDecksing


Phenotypes:
     1 GenomeRNAi human phenotype for ATP6V0E2:
 Decreased influenza A virus in 

Animal Models:
   inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for ATP6V0E2 

miRNA
Products:
    
OriGene 3'-UTR Clone (see all 2): ATP6V0E2
Browse MicroRNA Expression Plasmids
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ATP6V0E2
1 QIAGEN miScript miRNA Assays for microRNA that regulate ATP6V0E2:
hsa-miR-1257
SwitchGear 3'UTR luciferase reporter plasmidATP6V0E2 3' UTR sequence
Inhib. RNA
Products:
    
Browse for Gene Knock-down Tools from EMD Millipore
OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ATP6V0E2 (see all 7)
OriGene shRNA RFP: ATP6V0E2
OriGene siRNA: ATP6V0E2
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ATP6V0E2
Sirion Biotech Custom design and validation of potent shRNA sequences against ATP6V0E2 

Gene Editing
Products:
DNA2.0 Custom Protein Engineering Service for ATP6V0E2
Sirion Biotech Customized adenovirus for overexpression of ATP6V0E2 
Sirion Biotech Customized adenovirus for potent knockdown of ATP6V0E2

Clone
Products:
     
Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ATP6V0E2 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ATP6V0E2 (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
GenScript: all cDNA clones in your preferred vector (see all 2): ATP6V0E2 (NM_001100592)
Browse Sino Biological Human cDNA Clones
DNA2.0 Custom Codon Optimized Gene Synthesis Service for ATP6V0E2
Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ATP6V0E2 

Cell Line
Products:
     
GenScript Custom overexpressing Cell Line Services for ATP6V0E2
Search LifeMap BioReagents cell lines for ATP6V0E2
Sirion Biotech Customized stable knockdown cell line services for ATP6V0E2 
Sirion Biotech Customized inducible knockdown cell line services for ATP6V0E2
Sirion Biotech Customized stable overexpressing cell line services for ATP6V0E2
Sirion Biotech Customized inducible overexpressing cell line services for ATP6V0E2

In Situ Assay
Products:
   

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ATP6V0E2


(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/9 super-pathways (see all 9About this table 
See pathways by source

Super-pathwaycontained gene-specific pathways
1Insulin receptor recycling
Insulin receptor recycling1.00
Latent infection of Homo sapiens with Mycobacterium tuberculosis0.64
Transferrin endocytosis and recycling0.79
Iron uptake and transport0.56
Collecting duct acid secretion0.68
Vibrio cholerae infection0.41
Phagosomal maturation (early endosomal stage)0.64
Epithelial cell signaling in Helicobacter pylori infection0.33
2Disease
Disease1.00
3Rheumatoid arthritis
Rheumatoid arthritis1.00
4Phagosome
Phagosome1.00
5IRS-related events
Signaling by Insulin receptor0.74

Pathway sources
See GeneCards unified pathways
Show all pathways


5/9        Reactome Pathways for ATP6V0E2 (see all 9)
    Insulin receptor recycling
Phagosomal maturation (early endosomal stage)
Latent infection of Homo sapiens with Mycobacterium tuberculosis
Iron uptake and transport
Disease


5/7         Kegg Pathways  (Kegg details for ATP6V0E2) (see all 7):
    Oxidative phosphorylation
Metabolic pathways
Phagosome
Collecting duct acid secretion
Vibrio cholerae infection


ATP6V0E2 for pathways           About GeneDecksing

Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ATP6V0E2

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/55 Interacting proteins for ATP6V0E2 (ENSP000004116724) via UniProtKB, MINT, STRING, and/or I2D (see all 55)
InteractantInteraction Details
GeneCardExternal ID(s)
ATP6V0E1ENSP000002650934STRING: ENSP00000265093
ATP6V0A1ENSP000002646494STRING: ENSP00000264649
ATP6V0A2ENSP000003322474STRING: ENSP00000332247
ATP6V0A4ENSP000002538564STRING: ENSP00000253856
ATP6V0BENSP000002360674STRING: ENSP00000236067
About this table

Gene Ontology (GO): 5/9 biological process terms (GO ID links to tree view) (see all 9):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006879cellular iron ion homeostasis TAS--
GO:0007035vacuolar acidification ISS--
GO:0008286insulin receptor signaling pathway TAS--
GO:0015991ATP hydrolysis coupled proton transport IEA--
GO:0016049cell growth IGI17350184

ATP6V0E2 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

ATP6V0E2 for compounds           About GeneDecksing

Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Compounds for ATP6V0E2 available from Tocris Bioscience    About this table
CompoundAction CAS #
Bafilomycin A1H+-ATPase (vacuolar) inhibitor[88899-55-2]
Concanamycin AH+-ATPase (vacuolar) inhibitor[80890-47-7]

4 HMDB Compounds for ATP6V0E2    About this table
CompoundSynonyms CAS #PubMed Ids
ADPadenosindiphosphorsaeure (see all 8)58-64-0--
Adenosine triphosphate5'-(tetrahydrogen triphosphate) Adenosine (see all 24)56-65-5--
PhosphateNFB Orthophosphate (see all 13)14265-44-2--
WaterDihydrogen oxide (see all 2)7732-18-5--
3 Novoseek chemical compound relationships for ATP6V0E2 gene    About this table
Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
bafilomycin a1 85.4 5 10948170 (1), 8523573 (1), 9811698 (1), 11240123 (1)
concanamycin a 83.8 2 8050591 (1), 8523573 (1)
hydrogen 50.6 19 9502788 (2), 16621796 (2), 11240123 (2), 17239604 (1) (see all 12)

Search CenterWatch for drugs/clinical trials and news about ATP6V0E2 / VA0E2 

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for ATP6V0E2 gene (2 alternative transcripts): 
NM_001100592.1  NM_145230.2  

Unigene Cluster for ATP6V0E2:

ATPase, H+ transporting V0 subunit e2
Hs.698060  [show with all ESTs]
Unigene Representative Sequence: AF452639
10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000421974(uc003wgo.1) ENST00000456496(uc003wgp.3 uc003wgr.3 uc003wgq.3)
ENST00000464683 ENST00000479613 ENST00000471877 ENST00000464662 ENST00000483478
ENST00000495408 ENST00000490092 ENST00000425642(uc003wgs.3)

miRNA
Products:
     
OriGene 3'-UTR Clone (see all 2): ATP6V0E2
Browse OriGene MicroRNA Expression Plasmids
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ATP6V0E2
1 QIAGEN miScript miRNA Assays for microRNA that regulate ATP6V0E2:
hsa-miR-1257
SwitchGear 3'UTR luciferase reporter plasmidATP6V0E2 3' UTR sequence
Inhib. RNA
Products:
     
Browse for Gene Knock-down Tools from EMD Millipore
OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ATP6V0E2 (see all 7)
OriGene shRNA RFP: ATP6V0E2
OriGene siRNA: ATP6V0E2
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ATP6V0E2
Sirion Biotech Custom design and validation of potent shRNA sequences against ATP6V0E2 
Clone
Products:
     
OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ATP6V0E2 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ATP6V0E2 (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
GenScript: all cDNA clones in your preferred vector (see all 2): ATP6V0E2 (NM_001100592)
DNA2.0 Custom Codon Optimized Gene Synthesis Service for ATP6V0E2
Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ATP6V0E2 
Primer
Products:
    
OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ATP6V0E2
Browse OriGene validated miRNA SYBR primer pairs
SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ATP6V0E2
  QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ATP6V0E2
  QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ATP6V0E2

Additional cDNA sequence: 

AF452639.1 AK057700.1 AK094602.1 AK098362.1 AK172725.1 AK290086.1 AY037164.1 BC015899.1 
BX640846.1 DQ989009.1 DQ995344.1 

24 DOTS entries:

DT.100840531  DT.101980276  DT.100882287  DT.121117244  DT.91783663  DT.95346780  DT.97847448  DT.121117156 
DT.315312  DT.97847449  DT.100882310  DT.100882312  DT.100882318  DT.100882315  DT.121117202  DT.97795467 
DT.100658267  DT.100770807  DT.100799130  DT.100882297  DT.121117185  DT.121117231  DT.95240846  DT.99938811 

24/375 AceView cDNA sequences (see all 375):

BE858461 CF552941 CR597181 CR591680 BI755299 CR592252 BQ068210 AI688419 
CB215863 CR603936 BM799524 CR623395 CR598722 AY037164 CR603983 CR618284 
CR603296 BI824775 AK098362 CD673048 BM722712 CR614326 CR602705 CR597079 

GeneLoc Exon Structure

5/11 Alternative Splicing Database (ASD) splice patterns (SP) for ATP6V0E2 (see all 11)    About this scheme

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b · 10c · 10d · 10e · 10f
SP1:                          -     -     -           -     -                 -     -                                             
SP2:                          -     -     -           -     -           -                 -                                       
SP3:                          -     -     -           -                       -     -     -                                       
SP4:                          -     -     -           -     -                 -     -     -                                       
SP5:                          -     -     -                 -                                                                     


ECgene alternative splicing isoforms for ATP6V0E2

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

ATP6V0E2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CCAGTTCCTG
ATP6V0E2 Expression
About this image

ATP6V0E2 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

Stem Cell Differentiation: 1 LifeMap Cell 
NameCategory
PureStem™ progenitor SM22 (Embryonic Progenitor Cell)
Expression: Positive    Negative     Selective marker
Experimental details: Curated     Microarrays     In-situ hybridization

See ATP6V0E2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ATP6V0E2

SOURCE GeneReport for Unigene cluster: Hs.698060

UniProtKB/Swiss-Prot: VA0E2_HUMAN, Q8NHE4
Tissue specificity: Isoform 1 is expressed at high levels in heart, brain and kidney and also detected in inner ear
epithelium, vestibule, testis, epididymis and bladder. Isoform 2 is expressed in heart, kidney, placenta and pancreas.
Isoform 2 is not detected in frontal cortex, but is prevalent in all other brain areas

    SABiosciences Custom PCR Arrays for ATP6V0E2
Primer
Products:
OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ATP6V0E2
Browse OriGene validated miRNA SYBR primer pairs
SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ATP6V0E2
QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ATP6V0E2
QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ATP6V0E2
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ATP6V0E2

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for ATP6V0E2 gene from 6/17 species (see all 17)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves ATP6V0E21 ATPase, H+ transporting V0 subunit e2 86.01(n)
90.12(a)
  769770  XM_001233068.2  XP_001233069.1 
lizard
(Anolis carolinensis)
Reptilia ATP6V0E26
--
64(a)
1 ↔ 1
3(38352229-38354281)
tropical clawed frog
(Xenopus tropicalis)
Amphibia Str.156252 Transcribed sequence with weak similarity to protein more 78.57(n)    BX729934.1 
zebrafish
(Danio rerio)
Actinopterygii atpv0e21 ATPase, H+ transporting V0 subunit e2 68.72(n)
77.78(a)
  553767  NM_001172635.1  NP_001166106.1 
fruit fly
(Drosophila melanogaster)
Insecta VhaM9.7-a6
VhaM9.7-b6
(see all 4)
Vacuolar H[+] ATPase subunit M9.7-b
(see all 4)
32(a)
26(a)
(see all 4)
many ↔ many
many ↔ many
(see all 4)
3L(4262705-4263464)
3L(21532962-21534315)
worm
(Caenorhabditis elegans)
Secernentea vha-176
V-type proton ATPase subunit e
31(a)
1 → many
IV(9321782-9322511)


ENSEMBL Gene Tree for ATP6V0E2 (if available)
TreeFam Gene Tree for ATP6V0E2 (if available) 

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for ATP6V0E2 gene
ATP6V0E12  
1 SIMAP similar gene for ATP6V0E2 using alignment to 3 protein entries:     VA0E2_HUMAN (see all proteins):
ATP6V0E1

ATP6V0E2 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/190 NCBI SNPs in ATP6V0E2 are shown (see all 190    About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 7 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1381119511,2
--149568159(+) CTCCTC/TCTACC 3 -- us2k1 int10--------
rs785031461,2
--149568201(+) ATGAAC/TGATAG 3 -- us2k1 int11Minor allele frequency- T:0.01EA 120
rs801788001,2
F--149568224(+) CATCAG/AGACCC 3 -- us2k1 int11Minor allele frequency- A:0.06EA 120
rs47258341,2
C,F,A,H--149568262(+) TGTCAA/GTCACA 3 -- us2k1 int114Minor allele frequency- G:0.45NA WA CSA EA 694
rs47258351,2
C,F,A,H--149568291(+) GAGCCG/ATGGCA 3 -- int1 us2k114Minor allele frequency- A:0.37NA WA CSA EA 514
rs624928451,2
C--149568304(+) GCAGTC/TGGTGG 3 -- us2k1 int12Minor allele frequency- T:0.05NA 122
rs1921005051,2
--149568310(+) GGTGGC/TGCCAA 3 -- us2k1 int10--------
rs1495110521,2
--149568330(+) GAAGCC/TGCCAG 3 -- int1 us2k10--------
rs1845995421,2
--149568331(+) AAGCCA/GCCAGG 3 -- us2k1 int10--------
rs47258361,2
C,F,A,H--149568360(+) GCCAGC/TGGAAT 3 -- us2k1 int1 tfbs315Minor allele frequency- T:0.42NA WA CSA EA 694

HapMap Linkage Disequilibrium report for ATP6V0E2 (149570057 - 149577787 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 8 variations for ATP6V0E2
     6 CNVs: 0727 31399 2716 3709 53781 52150
     2 Indels: 47263 41580

SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ATP6V0E2
DNA2.0 Custom Variant and Variant Library Synthesis for ATP6V0E2

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

ATP6V0E2 for disorders           About GeneDecksing

OMIM gene information: 611019    OMIM disorders: --

7 diseases for ATP6V0E2:    About MalaCards
osteopetrosis    rheumatoid arthritis    influenza    cholera
arthritis    melanoma    neuronitis

2 Novoseek disease relationships for ATP6V0E2 gene    About this table

Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
virus infection 10.4 1 8050591 (1)
influenza 6.92 2 8050591 (1), 7884876 (1)


Export disorders for ATP6V0E2 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for ATP6V0E2 gene, integrated from 9 sources (see all 40):
(articles sorted by number of sources associating them with ATP6V0E2)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Molecular cloning and characterization of a novel form of the human vacuolar H+-ATPase e-subunit: an essential proton pump component. (PubMed id 17350184)1, 2 Blake-Palmer K.G.... Karet F.E. (2007)
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
  3. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
  4. Coupling of rotation and catalysis in F(1)-ATPase rev ealed by single-molecule imaging and manipulation. (PubMed id 17662945)1 Adachi K....Kinosita K. (2007)
  5. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PubMed id 16303743)1 Otsuki T....Isogai T. (2005)
  6. The DNA sequence of human chromosome 7. (PubMed id 12853948)2 Hillier L.W.... Wilson R.K. (2003)
  7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
  8. Toward a complete human genome sequence. (PubMed id 9847074)1 Wilson R. (1998)
  9. Receptor-mediated endocytosis: the intracellular jour ney of transferrin and its receptor. (PubMed id 2874839)1 Dautry-Varsat A. (1986)
  10. In vivo treatment with granulocyte colony-stimulating factor does not delay apoptosis in human neutrophils by increasing the expression of the vacuolar proton ATPase. (PubMed id 11813826)9 Zimbelman J....Ambruso D.R. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Disorders
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 155066 HGNC: 21723 AceView: C7orf32 Ensembl:ENSG00000171130 euGenes: HUgn155066
ECgene: ATP6V0E2 Kegg: 155066 H-InvDB: ATP6V0E2

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for ATP6V0E2 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for ATP6V0E2 gene:
Search GeneIP for patents involving ATP6V0E2

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section

 
 EMD Millipore Custom Antibody & Bulk Services
 EMD Millipore Preclinical / Clinical Development Services
 EMD Millipore Immunoassay Services
 EMD Millipore Target Screening & Profiling Services

  
 Browse Antibodies   Browse Cell Culture Products  
 Browse ELISAs   Browse Flow Cytometry Kits  
 Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
 Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
 Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
 Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
 Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
 Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
 Browse OriGene Antibodies   OriGene shRNA RFP for ATP6V0E2  
 OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ATP6V0E2   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ATP6V0E2  
 OriGene Protein Over-expression Lysate for ATP6V0E2   Browse OriGene Fluorogenic Cell Assay Kits  
 OriGene siRNA for ATP6V0E2   OriGene 3'-UTR Clone for ATP6V0E2  
 OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ATP6V0E2   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ATP6V0E2  
 Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
 Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
 Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
 OriGene Custom Antibody Services for ATP6V0E2   OriGene Custom Protein Services for ATP6V0E2  
 OriGene Custom Immunoassay Development  

 
 
 QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ATP6V0E2
 QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ATP6V0E2
 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ATP6V0E2
 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ATP6V0E2
 QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ATP6V0E2
 QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ATP6V0E2
 GenScript Custom Purified and Recombinant Proteins Services for ATP6V0E2 GenScript cDNA clones with any tag delivered in your preferred vector for ATP6V0E2
 GenScript Custom Assay Services for ATP6V0E2 GenScript Superior Antibodies for ATP6V0E2
 GenScript Custom overexpressing Cell Line Services for ATP6V0E2 CloneReady with Over 120,000 Genes
 Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
 Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
 Custom Peptide Services
 Search for Antibodies & Assays

 Regulatory tfbs in ATP6V0E2 promoter
 Search Chromatin IP Primers for ATP6V0E2
 RT2 qPCR Primer Assay in human, mouse, rat ATP6V0E2
 Search GNC Networks for ATP6V0E2
 SABiosciences Custom PCR Arrays for ATP6V0E2
 Tocris compounds for ATP6V0E2
 Browse Sino Biological Proteins and Antibodies
 Browse Sino Biological cDNA Clones
 Antibodies/Proteins Production Services
 Rabbit Monoclonal Antibody Platform
 Bulk Purchasing
 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
 Novus Tissue Slides
 ATP6V0E2 antibodies
 ATP6V0E2 lysates
 Search for Antibodies for ATP6V0E2 at Abcam
 See all of Abcam's Antibodies, Kits and Proteins for ATP6V0E2
 Custom Antibody / Protein Production Service
 Bulk Purchasing
 Advantages of Rabbit Monoclonal antibodies
 Abcam protocols and scientific support
 Browse ProSpec Recombinant Proteins




 ATP6V0E2 Proteins, Antibodies, CLIAs, and ELISAs
 Search LifeMap BioReagents cell lines for ATP6V0E2
 Gene Synthesis
 Protein Engineering
 Variant Library Synthesis
 Codon Optimization
 Protein Production and Purification
 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ATP6V0E2
 SwitchGear 3'UTR luciferase reporter plasmids for ATP6V0E2
 SwitchGear Promoter luciferase reporter plasmids for ATP6V0E2
 Search ThermoFisher Antibodies for ATP6V0E2
 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ATP6V0E2
 inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for ATP6V0E2
Sirion Biotech Customized:
 stable knockdown cell line services for ATP6V0E2
 inducible knockdown cell line services for ATP6V0E2
 design and validation of potent shRNA sequences against ATP6V0E2
 adenovirus for potent knockdown of ATP6V0E2
 adenovirus for overexpression of ATP6V0E2
 stable overexpressing cell line services for ATP6V0E2
 inducible overexpressing cell line services for ATP6V0E2
       
GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 14 May 2013

View Random Gene

Category
VWF
(GIFTS: 73)
von Willebrand factor
GIFtS Group
The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes      Disease genes      ATP6V0E2 gene at Home site.
hostname: 356977-web1.xennexinc.com index build: 106 solr: 1.4