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Aliases for ATP6V0CP3 Gene

Subcategory (RNA class) for ATP6V0CP3 Gene

lncRNA

Aliases for ATP6V0CP3 Gene

  • ATPase H+ Transporting V0 Subunit C Pseudogene 3 2 3 5
  • ATPase, H+ Transporting, Lysosomal 16kDa, V0 Subunit C Pseudogene 3 2

External Ids for ATP6V0CP3 Gene

ORGUL Members for ATP6V0CP3 Gene

Summaries for ATP6V0CP3 Gene

GeneCards Summary for ATP6V0CP3 Gene

ATP6V0CP3 (ATPase H+ Transporting V0 Subunit C Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP6V0CP3 Gene

Genomics for ATP6V0CP3 Gene

Regulatory Elements for ATP6V0CP3 Gene

Enhancers for ATP6V0CP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F042725 1.4 FANTOM5 ENCODE 0.8 -0.1 -52 2.5 ATF1 ARNT ARID4B ZNF2 YY1 SLC30A9 ZNF143 KLF13 SP5 NCOA1 UBR2 POLH RRP36 PRPH2 TBCC KLC4 TRERF1 CUL9 C6orf226 ATP6V0CP3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ATP6V0CP3 on UCSC Golden Path with GeneCards custom track

Promoters for ATP6V0CP3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001216890 -134 1400 ATF1 ARNT ARID4B ZNF2 YY1 SLC30A9 ZNF143 KLF13 SP5 NCOA1

Genomic Location for ATP6V0CP3 Gene

Chromosome:
6
Start:
42,727,234 bp from pter
End:
42,728,194 bp from pter
Size:
961 bases
Orientation:
Plus strand

Genomic View for ATP6V0CP3 Gene

Genes around ATP6V0CP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP6V0CP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP6V0CP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP6V0CP3 Gene

Proteins for ATP6V0CP3 Gene

Post-translational modifications for ATP6V0CP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP6V0CP3 Gene

Domains & Families for ATP6V0CP3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP6V0CP3 Gene

Function for ATP6V0CP3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP6V0CP3 Gene

Localization for ATP6V0CP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ATP6V0CP3 Gene

Pathways & Interactions for ATP6V0CP3 Gene

SuperPathways for ATP6V0CP3 Gene

No Data Available

Interacting Proteins for ATP6V0CP3 Gene

Gene Ontology (GO) - Biological Process for ATP6V0CP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP6V0CP3 Gene

Transcripts for ATP6V0CP3 Gene

mRNA/cDNA for ATP6V0CP3 Gene

(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ATP6V0CP3 Gene

ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ATP6V0CP3 Gene

No ASD Table

Relevant External Links for ATP6V0CP3 Gene

GeneLoc Exon Structure for
ATP6V0CP3
ECgene alternative splicing isoforms for
ATP6V0CP3

Expression for ATP6V0CP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ATP6V0CP3 Gene

NURSA nuclear receptor signaling pathways regulating expression of ATP6V0CP3 Gene:

ATP6V0CP3

SOURCE GeneReport for Unigene cluster for ATP6V0CP3 Gene:

Hs.563394
genes like me logo Genes that share expression patterns with ATP6V0CP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ATP6V0CP3 Gene

Orthologs for ATP6V0CP3 Gene

Evolution for ATP6V0CP3 Gene

ENSEMBL:
Gene Tree for ATP6V0CP3 (if available)
TreeFam:
Gene Tree for ATP6V0CP3 (if available)

No data available for Orthologs for ATP6V0CP3 Gene

Paralogs for ATP6V0CP3 Gene

No data available for Paralogs for ATP6V0CP3 Gene

Variants for ATP6V0CP3 Gene

Sequence variations from dbSNP and Humsavar for ATP6V0CP3 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111488251 -- 42,725,890(+) ATCTT(G/T)TCATC upstream-variant-2KB
rs112143110 -- 42,728,573(+) AGAGA(A/G)AGAGA downstream-variant-500B
rs113198428 -- 42,728,561(+) AGGGA(A/G)AGAGA downstream-variant-500B
rs113325257 -- 42,728,573(+) GAGAG(-/AGAA)AGAGA downstream-variant-500B
rs113558090 -- 42,728,196(+) GGGGG(-/A)AAAAA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for ATP6V0CP3 Gene

Variant ID Type Subtype PubMed ID
nsv830650 CNV loss 17160897
nsv1017398 CNV gain 25217958
esv3576145 CNV gain 25503493

Relevant External Links for ATP6V0CP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP6V0CP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP6V0CP3 Gene

Disorders for ATP6V0CP3 Gene

Relevant External Links for ATP6V0CP3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ATP6V0CP3

No disorders were found for ATP6V0CP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP6V0CP3 Gene

Publications for ATP6V0CP3 Gene

No publications were found for ATP6V0CP3 Gene.

Products for ATP6V0CP3 Gene

Sources for ATP6V0CP3 Gene

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