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Aliases for ATP6V0CP3 Gene

Subcategory (RNA class) for ATP6V0CP3 Gene

lncRNA

Aliases for ATP6V0CP3 Gene

  • ATPase H+ Transporting V0 Subunit C Pseudogene 3 2 3
  • ATPase, H+ Transporting, Lysosomal 16kDa, V0 Subunit C Pseudogene 3 2 5

External Ids for ATP6V0CP3 Gene

ORGUL Members for ATP6V0CP3 Gene

Summaries for ATP6V0CP3 Gene

GeneCards Summary for ATP6V0CP3 Gene

ATP6V0CP3 (ATPase H+ Transporting V0 Subunit C Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP6V0CP3 Gene

Genomics for ATP6V0CP3 Gene

Regulatory Elements for ATP6V0CP3 Gene

Enhancers for ATP6V0CP3 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around ATP6V0CP3 on UCSC Golden Path with GeneCards custom track

Genomic Location for ATP6V0CP3 Gene

Chromosome:
6
Start:
42,727,234 bp from pter
End:
42,728,194 bp from pter
Size:
961 bases
Orientation:
Plus strand

Genomic View for ATP6V0CP3 Gene

Genes around ATP6V0CP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP6V0CP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP6V0CP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP6V0CP3 Gene

Proteins for ATP6V0CP3 Gene

Post-translational modifications for ATP6V0CP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP6V0CP3 Gene

Domains & Families for ATP6V0CP3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP6V0CP3 Gene

Function for ATP6V0CP3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP6V0CP3 Gene

Localization for ATP6V0CP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ATP6V0CP3 Gene

Pathways & Interactions for ATP6V0CP3 Gene

SuperPathways for ATP6V0CP3 Gene

No Data Available

Interacting Proteins for ATP6V0CP3 Gene

Gene Ontology (GO) - Biological Process for ATP6V0CP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP6V0CP3 Gene

Drugs & Compounds for ATP6V0CP3 Gene

No Compound Related Data Available

Transcripts for ATP6V0CP3 Gene

mRNA/cDNA for ATP6V0CP3 Gene

(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ATP6V0CP3 Gene

ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ATP6V0CP3 Gene

No ASD Table

Relevant External Links for ATP6V0CP3 Gene

GeneLoc Exon Structure for
ATP6V0CP3
ECgene alternative splicing isoforms for
ATP6V0CP3

Expression for ATP6V0CP3 Gene

mRNA expression in normal human tissues for ATP6V0CP3 Gene

SOURCE GeneReport for Unigene cluster for ATP6V0CP3 Gene Hs.563394

genes like me logo Genes that share expression patterns with ATP6V0CP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for ATP6V0CP3 Gene

Orthologs for ATP6V0CP3 Gene

Evolution for ATP6V0CP3 Gene

ENSEMBL:
Gene Tree for ATP6V0CP3 (if available)
TreeFam:
Gene Tree for ATP6V0CP3 (if available)

No data available for Orthologs for ATP6V0CP3 Gene

Paralogs for ATP6V0CP3 Gene

No data available for Paralogs for ATP6V0CP3 Gene

Variants for ATP6V0CP3 Gene

Sequence variations from dbSNP and Humsavar for ATP6V0CP3 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs11445050 -- 42,725,859(+) AAAAA(-/A/AA)GAACA upstream-variant-2KB
rs67201140 -- 42,725,691(+) AATAC(-/A)AAAAA upstream-variant-2KB
rs113558090 -- 42,728,196(+) GGGGG(-/A)AAAAA downstream-variant-500B
rs3209957 -- 42,727,326(+) GCTGC(C/T)TATGG upstream-variant-2KB
rs72862687 -- 42,726,482(+) TCATA(C/T)CTCCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ATP6V0CP3 Gene

Variant ID Type Subtype PubMed ID
nsv830650 CNV Loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for ATP6V0CP3 Gene

Disorders for ATP6V0CP3 Gene

Relevant External Links for ATP6V0CP3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ATP6V0CP3

No disorders were found for ATP6V0CP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP6V0CP3 Gene

Publications for ATP6V0CP3 Gene

No publications were found for ATP6V0CP3 Gene.

Products for ATP6V0CP3 Gene

Sources for ATP6V0CP3 Gene

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