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Aliases for ATP6V0B Gene

Aliases for ATP6V0B Gene

  • ATPase, H+ Transporting, Lysosomal 21kDa, V0 Subunit B 2 3
  • Vacuolar Proton Pump 21 KDa Proteolipid Subunit 3 4
  • V-ATPase 21 KDa Proteolipid Subunit 3 4
  • HATPL 3 4
  • ATP6F 3 4
  • ATPase, H+ Transporting, Lysosomal, 21-KD, V0 Subunit C-Prime, Prime 3
  • ATPase, H+ Transporting, Lysosomal (Vacuolar Proton Pump) 21kD 2
  • ATPase, H+ Transporting, Lysosomal 21kDa, V0 Subunit C 2
  • Vacuolar ATP Synthase 21 KDa Proteolipid Subunit 3
  • H(+)-Transporting Two-Sector ATPase, Subunit F 3
  • ATPase, H+ Transporting, Lysosomal, Subunit F 3
  • V-ATPase Subunit C 3
  • VMA16 3

External Ids for ATP6V0B Gene

Previous HGNC Symbols for ATP6V0B Gene

  • ATP6F

Previous GeneCards Identifiers for ATP6V0B Gene

  • GC01P044278
  • GC01P043441
  • GC01P043870
  • GC01P043853
  • GC01P044109
  • GC01P044213
  • GC01P044440
  • GC01P042556

Summaries for ATP6V0B Gene

Entrez Gene Summary for ATP6V0B Gene

  • This gene encodes a portion of the V0 domain of vacuolar ATPase (V-ATPase), a multisubunit enzyme that mediates acidification of eukaryotic intracellular organelles. Activity of this enzyme is necessary for such varied processes as protein sorting, zymogen activation, receptor-mediated endocytosis, and synaptic vesicle proton gradient generation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2014]

GeneCards Summary for ATP6V0B Gene

ATP6V0B (ATPase, H+ Transporting, Lysosomal 21kDa, V0 Subunit B) is a Protein Coding gene. Diseases associated with ATP6V0B include lymphocytic choriomeningitis. Among its related pathways are Immune System and Signaling by GPCR. GO annotations related to this gene include transporter activity and hydrogen ion transmembrane transporter activity.

UniProtKB/Swiss-Prot for ATP6V0B Gene

  • Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells

Tocris Summary for ATP6V0B Gene

  • H+-ATPase (also known as vacuolar ATPase, V-ATPase) is a enzyme transporter that functions to acidify intracellular compartments in eukaryotic cells. It is ubiquitously expressed and is present in endomembrane organelles such as vacuoles, lysosomes and endosomes.

Gene Wiki entry for ATP6V0B Gene

No data available for PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP6V0B Gene

Genomics for ATP6V0B Gene

Regulatory Elements for ATP6V0B Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ATP6V0B Gene

Chromosome:
1
Start:
43,974,487 bp from pter
End:
43,978,300 bp from pter
Size:
3,814 bases
Orientation:
Plus strand

Genomic View for ATP6V0B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ATP6V0B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP6V0B Gene

Proteins for ATP6V0B Gene

  • Protein details for ATP6V0B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q99437-VATO_HUMAN
    Recommended name:
    V-type proton ATPase 21 kDa proteolipid subunit
    Protein Accession:
    Q99437
    Secondary Accessions:
    • D3DPY5
    • Q6IB32

    Protein attributes for ATP6V0B Gene

    Size:
    205 amino acids
    Molecular mass:
    21406 Da
    Quaternary structure:
    • Interacts with IFITM3.

    Alternative splice isoforms for ATP6V0B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ATP6V0B Gene

Proteomics data for ATP6V0B Gene at MOPED

Post-translational modifications for ATP6V0B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

No data available for DME Specific Peptides for ATP6V0B Gene

Domains & Families for ATP6V0B Gene

Gene Families for ATP6V0B Gene

Suggested Antigen Peptide Sequences for ATP6V0B Gene

Graphical View of Domain Structure for InterPro Entry

Q99437

UniProtKB/Swiss-Prot:

VATO_HUMAN :
  • Belongs to the V-ATPase proteolipid subunit family.
Family:
  • Belongs to the V-ATPase proteolipid subunit family.
genes like me logo Genes that share domains with ATP6V0B: view

Function for ATP6V0B Gene

Molecular function for ATP6V0B Gene

UniProtKB/Swiss-Prot Function:
Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells

Gene Ontology (GO) - Molecular Function for ATP6V0B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005215 transporter activity TAS 9653649
GO:0015078 hydrogen ion transmembrane transporter activity --
GO:0046961 proton-transporting ATPase activity, rotational mechanism IBA --
genes like me logo Genes that share ontologies with ATP6V0B: view
genes like me logo Genes that share phenotypes with ATP6V0B: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ATP6V0B

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for ATP6V0B Gene

Localization for ATP6V0B Gene

Subcellular locations from UniProtKB/Swiss-Prot for ATP6V0B Gene

Vacuole membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ATP6V0B Gene COMPARTMENTS Subcellular localization image for ATP6V0B gene
Compartment Confidence
vacuole 5
endosome 4
cytosol 2

Gene Ontology (GO) - Cellular Components for ATP6V0B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain IBA --
GO:0005768 endosome --
GO:0005774 vacuolar membrane --
GO:0010008 endosome membrane TAS --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with ATP6V0B: view

Pathways & Interactions for ATP6V0B Gene

genes like me logo Genes that share pathways with ATP6V0B: view

Interacting Proteins for ATP6V0B Gene

Gene Ontology (GO) - Biological Process for ATP6V0B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006879 cellular iron ion homeostasis TAS --
GO:0007035 vacuolar acidification IBA --
GO:0008286 insulin receptor signaling pathway TAS --
GO:0015991 ATP hydrolysis coupled proton transport IEA --
GO:0015992 proton transport TAS 9653649
genes like me logo Genes that share ontologies with ATP6V0B: view

No data available for SIGNOR curated interactions for ATP6V0B Gene

Drugs & Compounds for ATP6V0B Gene

(1) Drugs for ATP6V0B Gene - From: Tocris

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Bafilomycin A1 Experimental Pharma H+-ATPase (vacuolar) inhibitor 0

(2) Additional Compounds for ATP6V0B Gene - From: Tocris

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Concanamycin A
80890-47-7
Enterostatin
117830-79-2
genes like me logo Genes that share compounds with ATP6V0B: view

Transcripts for ATP6V0B Gene

Unigene Clusters for ATP6V0B Gene

ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ATP6V0B

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ATP6V0B Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c · 8d ^ 9a · 9b · 9c
SP1: - - - - - -
SP2: - - - - -
SP3: - - - - - - - -
SP4: - - -
SP5: - - - - - - - - -
SP6: - - - - -
SP7: - - - - - - - -
SP8: - -
SP9: - - -
SP10: -
SP11:
SP12:

Relevant External Links for ATP6V0B Gene

GeneLoc Exon Structure for
ATP6V0B
ECgene alternative splicing isoforms for
ATP6V0B

Expression for ATP6V0B Gene

mRNA expression in normal human tissues for ATP6V0B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ATP6V0B Gene

This gene is overexpressed in Whole Blood (x7.5).

SOURCE GeneReport for Unigene cluster for ATP6V0B Gene Hs.596514

mRNA Expression by UniProt/SwissProt for ATP6V0B Gene

Q99437-VATO_HUMAN
Tissue specificity: Ubiquitous
genes like me logo Genes that share expression patterns with ATP6V0B: view

Primer Products

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for ATP6V0B Gene

Orthologs for ATP6V0B Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ATP6V0B Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ATP6V0B 35
  • 93.01 (n)
  • 98.05 (a)
ATP6V0B 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ATP6V0B 35
  • 92.36 (n)
  • 97.56 (a)
ATP6V0B 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Atp6v0b 35
  • 89.59 (n)
  • 96.1 (a)
Atp6v0b 16
Atp6v0b 36
  • 96 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ATP6V0B 35
  • 94.44 (n)
  • 93.63 (a)
ATP6V0B 36
  • 92 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Atp6v0b 35
  • 92.67 (n)
  • 97.8 (a)
oppossum
(Monodelphis domestica)
Mammalia ATP6V0B 36
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ATP6V0B 36
  • 95 (a)
OneToOne
chicken
(Gallus gallus)
Aves ATP6V0B 35
  • 80.98 (n)
  • 89.76 (a)
ATP6V0B 36
  • 85 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ATP6V0B 36
  • 88 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia atp6v0b 35
  • 73.33 (n)
  • 87.32 (a)
Str.10702 35
zebrafish
(Danio rerio)
Actinopterygii atp6v0b 35
  • 75.61 (n)
  • 85.85 (a)
wufb33a01 35
atp6v0b 36
  • 83 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.3902 35
fruit fly
(Drosophila melanogaster)
Insecta CG7026 37
  • 56 (a)
VhaPPA1-1 37
  • 63 (a)
VhaPPA1-1 35
  • 62.3 (n)
  • 64.92 (a)
VhaPPA1-1 36
  • 58 (a)
OneToMany
VhaPPA1-2 36
  • 50 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009334 35
  • 66.28 (n)
  • 71.26 (a)
worm
(Caenorhabditis elegans)
Secernentea T01H3.1 37
  • 63 (a)
vha-4 35
  • 60.57 (n)
  • 65.59 (a)
vha-4 36
  • 57 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ACR071W 35
  • 57.59 (n)
  • 59.17 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E11529g 35
  • 56.69 (n)
  • 59.89 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes VMA16 35
  • 55.12 (n)
  • 56.98 (a)
VMA16 36
  • 47 (a)
OneToOne
VMA16 38
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G25610 35
  • 59.28 (n)
  • 56.96 (a)
soybean
(Glycine max)
eudicotyledons Gma.17713 35
rice
(Oryza sativa)
Liliopsida Os.20543 35
Os01g0610100 35
  • 63.68 (n)
  • 60.9 (a)
corn
(Zea mays)
Liliopsida Zm.3672 35
bread mold
(Neurospora crassa)
Ascomycetes NCU09747 35
  • 61.11 (n)
  • 61.11 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes vma16 35
  • 56.63 (n)
  • 55.68 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4230 36
  • 56 (a)
OneToOne
Species with no ortholog for ATP6V0B:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ATP6V0B Gene

ENSEMBL:
Gene Tree for ATP6V0B (if available)
TreeFam:
Gene Tree for ATP6V0B (if available)

Paralogs for ATP6V0B Gene

(2) SIMAP similar genes for ATP6V0B Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with ATP6V0B: view

No data available for Paralogs for ATP6V0B Gene

Variants for ATP6V0B Gene

Sequence variations from dbSNP and Humsavar for ATP6V0B Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs2286241 -- 43,975,097(+) TGCGC(C/G)CTGGC utr-variant-5-prime, synonymous-codon, reference
rs2286242 -- 43,975,683(+) TGGGG(A/G)CAGCC intron-variant
rs2286243 -- 43,975,861(+) AGGGC(A/G)GGGGG intron-variant
rs2486008 -- 43,974,113(+) TTAAG(C/T)GGGGT upstream-variant-2KB
rs4660761 -- 43,974,474(+) ATCGC(A/G)GGAGC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ATP6V0B Gene

Variant ID Type Subtype PubMed ID
nsv870606 CNV Loss 21882294
dgv217n71 CNV Loss 21882294
nsv732 CNV Insertion 18451855
nsv822498 CNV Gain 20364138

Variation tolerance for ATP6V0B Gene

Residual Variation Intolerance Score: 31.18% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.85; 17.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ATP6V0B Gene

HapMap Linkage Disequilibrium report
ATP6V0B
Human Gene Mutation Database (HGMD)
ATP6V0B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ATP6V0B Gene

Disorders for ATP6V0B Gene

MalaCards: The human disease database

(1) MalaCards diseases for ATP6V0B Gene - From: GeneCards

Disorder Aliases PubMed IDs
lymphocytic choriomeningitis
  • lymphocytic meningoencephalitis
- elite association

Relevant External Links for ATP6V0B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ATP6V0B
genes like me logo Genes that share disorders with ATP6V0B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ATP6V0B Gene

Publications for ATP6V0B Gene

  1. Identification and characterization of the gene encoding a second proteolipid subunit of human vacuolar H(+)-ATPase (ATP6F). (PMID: 9653649) Nishigori H. … Takeda J. (Genomics 1998) 2 23 67
  2. Mouse Atp6f, the gene encoding the 23-kDa proteolipid of vacuolar proton translocating ATPase. (PMID: 11675001) Sun-Wada G.H. … Futai M. (Gene 2001) 23 67
  3. The identification of novel proteins that interact with the GLP-1 receptor and restrain its activity. (PMID: 23864651) Huang X. … Wheeler M.B. (Mol. Endocrinol. 2013) 67
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 67
  5. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J. … Yang X. (Mol. Syst. Biol. 2011) 67

Products for ATP6V0B Gene

Sources for ATP6V0B Gene

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