Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ATP6AP1L Gene

Aliases for ATP6AP1L Gene

  • ATPase, H+ Transporting, Lysosomal Accessory Protein 1-Like 2 3
  • Vacuolar Proton Pump Subunit S1-Like Protein 4

External Ids for ATP6AP1L Gene

Previous GeneCards Identifiers for ATP6AP1L Gene

  • GC05P081612
  • GC05P076809

Summaries for ATP6AP1L Gene

GeneCards Summary for ATP6AP1L Gene

ATP6AP1L (ATPase, H+ Transporting, Lysosomal Accessory Protein 1-Like) is a Protein Coding gene. GO annotations related to this gene include proton-transporting ATPase activity, rotational mechanism and proton-transporting ATP synthase activity, rotational mechanism. An important paralog of this gene is ATP6AP1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP6AP1L Gene

Genomics for ATP6AP1L Gene

Regulatory Elements for ATP6AP1L Gene

Genomic Location for ATP6AP1L Gene

Start:
82,279,462 bp from pter
End:
82,386,977 bp from pter
Size:
107,516 bases
Orientation:
Plus strand

Genomic View for ATP6AP1L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ATP6AP1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP6AP1L Gene

Proteins for ATP6AP1L Gene

  • Protein details for ATP6AP1L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q52LC2-VAS1L_HUMAN
    Recommended name:
    V-type proton ATPase subunit S1-like protein
    Protein Accession:
    Q52LC2
    Secondary Accessions:

    Protein attributes for ATP6AP1L Gene

    Size:
    224 amino acids
    Molecular mass:
    25310 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ATP6AP1L Gene

Proteomics data for ATP6AP1L Gene at MOPED

Post-translational modifications for ATP6AP1L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ATP6AP1L Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ATP6AP1L Gene

Domains for ATP6AP1L Gene

Protein Domains for ATP6AP1L Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ATP6AP1L Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q52LC2

UniProtKB/Swiss-Prot:

VAS1L_HUMAN :
  • Q52LC2
Family:
  • Belongs to the vacuolar ATPase subunit S1 family.
genes like me logo Genes that share domains with ATP6AP1L: view

No data available for Gene Families for ATP6AP1L Gene

Function for ATP6AP1L Gene

Gene Ontology (GO) - Molecular Function for ATP6AP1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEA --
GO:0046961 proton-transporting ATPase activity, rotational mechanism IEA --
genes like me logo Genes that share ontologies with ATP6AP1L: view

Phenotypes for ATP6AP1L Gene

GenomeRNAi human phenotypes for ATP6AP1L:
genes like me logo Genes that share phenotypes with ATP6AP1L: view

Animal Model Products

CRISPR Products

miRNA for ATP6AP1L Gene

miRTarBase miRNAs that target ATP6AP1L

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ATP6AP1L

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for ATP6AP1L Gene

Localization for ATP6AP1L Gene

Subcellular locations from UniProtKB/Swiss-Prot for ATP6AP1L Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ATP6AP1L Gene COMPARTMENTS Subcellular localization image for ATP6AP1L gene
Compartment Confidence
plasma membrane 3
mitochondrion 2
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for ATP6AP1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
GO:0033180 proton-transporting V-type ATPase, V1 domain IEA --
genes like me logo Genes that share ontologies with ATP6AP1L: view

Pathways for ATP6AP1L Gene

SuperPathways for ATP6AP1L Gene

No Data Available

Interacting Proteins for ATP6AP1L Gene

Gene Ontology (GO) - Biological Process for ATP6AP1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015991 ATP hydrolysis coupled proton transport IEA --
genes like me logo Genes that share ontologies with ATP6AP1L: view

No data available for Pathways by source for ATP6AP1L Gene

Transcripts for ATP6AP1L Gene

Unigene Clusters for ATP6AP1L Gene

ATPase, H+ transporting, lysosomal accessory protein 1-like:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ATP6AP1L

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ATP6AP1L
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ATP6AP1L Gene

No ASD Table

Relevant External Links for ATP6AP1L Gene

GeneLoc Exon Structure for
ATP6AP1L
ECgene alternative splicing isoforms for
ATP6AP1L

Expression for ATP6AP1L Gene

mRNA expression in normal human tissues for ATP6AP1L Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for ATP6AP1L Gene Hs.729805

genes like me logo Genes that share expressions with ATP6AP1L: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for ATP6AP1L Gene

Orthologs for ATP6AP1L Gene

This gene was present in the common ancestor of animals.

Orthologs for ATP6AP1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ATP6AP1L 35
  • 99.26 (n)
  • 99.11 (a)
ATP6AP1L 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ATP6AP1L 36
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Atp6ap1l 16
Atp6ap1l 36
  • 42 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ATP6AP1L 36
  • 36 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ATP6AP1L 36
  • 38 (a)
OneToOne
chicken
(Gallus gallus)
Aves ATP6AP1L 36
  • 59 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ATP6AP1L 36
  • 50 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii ATP6AP1L (1 of 2) 36
  • 22 (a)
OneToMany
ATP6AP1L (2 of 2) 36
  • 40 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta VhaAC45 36
  • 8 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 9 (a)
OneToMany
Species with no ortholog for ATP6AP1L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ATP6AP1L Gene

ENSEMBL:
Gene Tree for ATP6AP1L (if available)
TreeFam:
Gene Tree for ATP6AP1L (if available)

Paralogs for ATP6AP1L Gene

Paralogs for ATP6AP1L Gene

Selected SIMAP similar genes for ATP6AP1L Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ATP6AP1L: view

Variants for ATP6AP1L Gene

Sequence variations from dbSNP and Humsavar for ATP6AP1L Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs150934 -- 82,304,520(-) TGTAA(C/T)GATAA intron-variant
rs183428 -- 82,314,306(-) tgtga(A/G)gtgat intron-variant
rs224821 -- 82,305,756(-) ATGTT(A/G)TTTGT intron-variant
rs224822 -- 82,306,815(-) GGGCA(C/T)GGCAG intron-variant
rs224823 -- 82,309,534(-) GAATT(A/G)ACTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ATP6AP1L Gene

Variant ID Type Subtype PubMed ID
nsv830364 CNV Loss 17160897
nsv520938 CNV Gain 19592680

Relevant External Links for ATP6AP1L Gene

HapMap Linkage Disequilibrium report
ATP6AP1L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ATP6AP1L Gene

Disorders for ATP6AP1L Gene

Relevant External Links for ATP6AP1L

Genetic Association Database (GAD)
ATP6AP1L
genes like me logo Genes that share disorders with ATP6AP1L: view

No data available for UniProtKB/Swiss-Prot for ATP6AP1L Gene

Publications for ATP6AP1L Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. A genome-wide association study of sporadic ALS in a homogenous Irish population. (PMID: 18057069) Cronin S. … Hardiman O. (Hum. Mol. Genet. 2008) 48
  4. Common variants at 5q22 associate with pediatric eosinophilic esophagitis. (PMID: 20208534) Rothenberg M.E. … Hakonarson H. (Nat. Genet. 2010) 48
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for ATP6AP1L Gene

Sources for ATP6AP1L Gene

Back to Top

Content