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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ATP5L2 Gene

protein-coding   GIFtS: 38
GCID: GC22M043036

ATP Synthase, H+ Transporting, Mitochondrial Fo Complex,...

(Previous names: ATP synthase, H+ transporting, mitochondrial F1F0, subunit...)
(Previous symbol: ATP5K2)
  Search for ATP5L2
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
ATP Synthase, H+ Transporting, Mitochondrial Fo Complex, Subunit G21 2     ATPase Subunit G 22 3
ATP5K21 2 3     ATP Synthase, H+ Transporting, Mitochondrial F0 Complex, Subunit G,
Isoform 21
ATP Synthase, H+ Transporting, Mitochondrial F0 Complex, Subunit G2
Pseudogene1 2
     ATP Synthase, H+ Transporting, Mitochondrial F0 Complex, Subunit G21
ATP Synthase, H+ Transporting, Mitochondrial F1F0, Subunit G1 2     ATP Synthase Subunit G 2, Mitochondrial2

External Ids:    HGNC: 132131   Entrez Gene: 2670202   Ensembl: ENSG000002492227   UniProtKB: Q7Z4Y83   
ORGUL members:         
NONCODE14:n384181      

Export aliases for ATP5L2 gene to outside databases

Previous GC identifers: GC22U900021 GC22M041266 GC22M041360 GC22M025996


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ATP5L2 Gene: 
ATP5L2 (ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G2) is a protein-coding gene, and is affiliated with the lncRNA class. Among its related super-pathways are superpathway of purine nucleotides de novo biosynthesis I. GO annotations related to this gene include hydrogen ion transmembrane transporter activity. An important paralog of this gene is ATP5L.

UniProtKB/Swiss-Prot: AT5L2_HUMAN, Q7Z4Y8
Function: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the
presence of a proton gradient across the membrane which is generated by electron transport complexes of the
respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous
catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a
peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary
mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. Minor subunit
located with subunit a in the membrane (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000022.10  NC_018933.2  NT_011520.12  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for ATP5L2
         Other transcription factors

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Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ATP5L2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q13.2   Ensembl cytogenetic band:  22q13.2   HGNC cytogenetic band: 22q13.2

ATP5L2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ATP5L2 gene location

GeneLoc information about chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22M043036:  view genomic region     (about GC identifiers)

Start:
43,035,809 bp from pter      End:
43,036,607 bp from pter
Size:
799 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: AT5L2_HUMAN, Q7Z4Y8 (See protein sequence)
Recommended Name: ATP synthase subunit g 2, mitochondrial  
Size: 100 amino acids; 11037 Da
Subunit: F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel.
CF(0) seems to have nine subunits: a, b, c, d, e, f, g, F6 and 8 (or A6L)
Subcellular location: Mitochondrion membrane (By similarity)
Caution: Could be the product of a pseudogene

Explore the universe of human proteins at neXtProt for ATP5L2: NX_Q7Z4Y8

ATP5L2 Protein expression data from MOPED1, PaxDb2 and MAXQB3 : --

REFSEQ proteins: NP_001159349.1  
ENSEMBL proteins: 
 ENSP00000421076  

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0000276mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEA--

ATP5L2 for ontologies           About GeneDecksing



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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
HGNC Gene Families: 
FATP: Mitochondrial respiratory chain complex / Complex V
F1ATP: ATPases / F-type

IUPHAR Guide to PHARMACOLOGY protein family classification: G2 
F-type ATPase

2 InterPro protein domains:
 IPR006808 ATPase_F0-cplx_gsu_mt
 IPR016702 ATP-Synthase_su_G_mt_met

Graphical View of Domain Structure for InterPro Entry Q7Z4Y8

ProtoNet protein and cluster: Q7Z4Y8

1 Blocks protein domain: IPB006808 Mitochondrial ATP synthase g subunit

UniProtKB/Swiss-Prot: AT5L2_HUMAN, Q7Z4Y8
Similarity: Belongs to the ATPase g subunit family


ATP5L2 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

     UniProtKB/Swiss-Prot Summary: AT5L2_HUMAN, Q7Z4Y8
Function: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the
presence of a proton gradient across the membrane which is generated by electron transport complexes of the
respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous
catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a
peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary
mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. Minor subunit
located with subunit a in the membrane (By similarity)

     Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0015078hydrogen ion transmembrane transporter activity IEA--
     
ATP5L2 for ontologies           About GeneDecksing


Phenotypes:
     2 GenomeRNAi human phenotypes for ATP5L2:
 Elongated cells  Increased gamma-H2AX phosphory 

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

SuperPaths for ATP5L2 About                                                                                                See pathways by source

SuperPathContained pathways About
1adenosine ribonucleotides de novo biosynthesis
adenosine ribonucleotides de novo biosynthesis0.49
superpathway of purine nucleotides de novo biosynthesis I0.49


2 BioSystems Pathways for ATP5L2
    superpathway of purine nucleotides de novo biosynthesis I
adenosine ribonucleotides de novo biosynthesis


Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ATP5L2

Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0015986ATP synthesis coupled proton transport IEA--

ATP5L2 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
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Browse Tocris compounds for ATP5L2 (AT5L2)

Search CenterWatch for drugs/clinical trials and news about ATP5L2 / AT5L2

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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About This Section

REFSEQ mRNAs for ATP5L2 gene: 
NM_001165877.1  

Unigene Cluster for ATP5L2:

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G2
Hs.664737  [show with all ESTs]
Unigene Representative Sequence: BG113928
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000505920(uc003bda.1)
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Additional mRNA sequence: 

AF092923.1 BC093719.1 BC093721.1 

3 DOTS entries:

DT.101986295  DT.40122977  DT.95374133 

6 AceView cDNA sequences:

NM_198822 AF092923 AI242903 AI249062 AA699849 BU584668 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

ATP5L2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GCTCCATTTG
ATP5L2 Expression
About this image


SOURCE GeneReport for Unigene cluster: Hs.664737
    SABiosciences Custom PCR Arrays for ATP5L2
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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for ATP5L2 gene from 4/8 species (see all 8)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves --
--
57(a)
1 → many
24(4389355-4392182)
zebrafish
(Danio rerio)
Actinopterygii atp5l6
ATP synthase, H+ transporting, mitochondrial F0 co...
56(a)
1 → many
5(32338277-32340908)
fruit fly
(Drosophila melanogaster)
Insecta l(2)062256
CG72116
--
46(a)
35(a)
many ↔ many
many ↔ many
2L(10975552-10976422)
2L(7747343-7747874)
worm
(Caenorhabditis elegans)
Secernentea asg-26
asg-16
Probable ATP synthase subunit g 1, mitochondrial
25(a)
24(a)
many ↔ many
many ↔ many
X(6841256-6842204)
I(8692944-8693469)
        Species with no ortholog for ATP5L2

ENSEMBL Gene Tree for ATP5L2 (if available)
TreeFam Gene Tree for ATP5L2 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for ATP5L2 gene
ATP5L2  
1 SIMAP similar gene for ATP5L2 using alignment to 1 protein entry:     AT5L2_HUMAN:
ATP5L

ATP5L2 for paralogs           About GeneDecksing


1 Pseudogenes.org Pseudogene for ATP5L2
PGOHUM00000250702


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
Structural Variations
     Database of Genomic Variants (DGV) 7 variations for ATP5L2:    About this table     
Variant IDTypeSubtypePubMed ID
dgv4983n71CNV Loss21882294
nsv915180CNV Loss21882294
nsv915185CNV Gain21882294
nsv428391CNV Gain18775914
essv4940CNV CNV17122850
essv20414CNV CNV17122850
dgv1407e1CNV Complex17122850

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for ATP5L2 gene integrated from 9 sources:
(articles sorted by number of sources associating them with ATP5L2)
    Utopia: connect your pdf to the dynamic
world of online information

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
  3. Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)
  4. Sequence of a cDNA encoding mouse F1F0-ATP synthase g subunit. (PubMed id 10361692)1 Jeon D....Baik M. (1999)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 267020 HGNC: 13213 AceView: ATP5L2 Ensembl:ENSG00000249222 euGenes: HUgn267020
ECgene: ATP5L2 H-InvDB: ATP5L2

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for ATP5L2 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for ATP5L2 gene:
Search GeneIP for patents involving ATP5L2

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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About This Section

 
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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