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Aliases for ATP5J2-PTCD1 Gene

Aliases for ATP5J2-PTCD1 Gene

  • ATP5J2-PTCD1 Readthrough 2 3

External Ids for ATP5J2-PTCD1 Gene

Previous GeneCards Identifiers for ATP5J2-PTCD1 Gene

  • GC07U903082
  • GC07M099018

Summaries for ATP5J2-PTCD1 Gene

Entrez Gene Summary for ATP5J2-PTCD1 Gene

  • This locus represents naturally occurring read-through transcription between the ATP5J2 (ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2) and PTCD1 (pentatricopeptide repeat domain 1) genes on chromosome 7. The read-through transcript encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Nov 2010]

GeneCards Summary for ATP5J2-PTCD1 Gene

ATP5J2-PTCD1 (ATP5J2-PTCD1 Readthrough) is a Protein Coding gene. Diseases associated with ATP5J2-PTCD1 include malaria.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP5J2-PTCD1 Gene

Genomics for ATP5J2-PTCD1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ATP5J2-PTCD1 Gene

Start:
99,416,739 bp from pter
End:
99,466,201 bp from pter
Size:
49,463 bases
Orientation:
Minus strand

Genomic View for ATP5J2-PTCD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ATP5J2-PTCD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP5J2-PTCD1 Gene

No data available for Regulatory Elements for ATP5J2-PTCD1 Gene

Proteins for ATP5J2-PTCD1 Gene

  • Protein details for ATP5J2-PTCD1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    C9JJT5
    Recommended name:
    Protein ATP5J2-PTCD1
    Protein Accession:
    C9JJT5
    Secondary Accessions:

    Protein attributes for ATP5J2-PTCD1 Gene

    Size:
    54 amino acids
    Molecular mass:
    5915 Da
    Quaternary structure:
    No Data Available
  • Protein details for ATP5J2-PTCD1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    G3V325
    Recommended name:
    Protein ATP5J2-PTCD1
    Protein Accession:
    G3V325
    Secondary Accessions:

    Protein attributes for ATP5J2-PTCD1 Gene

    Size:
    749 amino acids
    Molecular mass:
    84110 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ATP5J2-PTCD1 Gene

Proteomics data for ATP5J2-PTCD1 Gene at MOPED

Post-translational modifications for ATP5J2-PTCD1 Gene

No Post-translational modifications

Other Protein References for ATP5J2-PTCD1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ATP5J2-PTCD1 Gene

Domains for ATP5J2-PTCD1 Gene

Protein Domains for ATP5J2-PTCD1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ATP5J2-PTCD1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP5J2-PTCD1 Gene

Function for ATP5J2-PTCD1 Gene

Gene Ontology (GO) - Molecular Function for ATP5J2-PTCD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000049 tRNA binding --
GO:0044822 poly(A) RNA binding --
genes like me logo Genes that share ontologies with ATP5J2-PTCD1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ATP5J2-PTCD1 Gene

Localization for ATP5J2-PTCD1 Gene

Gene Ontology (GO) - Cellular Components for ATP5J2-PTCD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion --
GO:0005759 mitochondrial matrix --
genes like me logo Genes that share ontologies with ATP5J2-PTCD1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for ATP5J2-PTCD1 Gene

Pathways for ATP5J2-PTCD1 Gene

SuperPathways for ATP5J2-PTCD1 Gene

No Data Available

Interacting Proteins for ATP5J2-PTCD1 Gene

Gene Ontology (GO) - Biological Process for ATP5J2-PTCD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0042780 tRNA 3-end processing --
genes like me logo Genes that share ontologies with ATP5J2-PTCD1: view

No data available for Pathways by source for ATP5J2-PTCD1 Gene

Transcripts for ATP5J2-PTCD1 Gene

mRNA/cDNA for ATP5J2-PTCD1 Gene

(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP5J2-PTCD1 Gene

No ASD Table

Relevant External Links for ATP5J2-PTCD1 Gene

GeneLoc Exon Structure for
ATP5J2-PTCD1
ECgene alternative splicing isoforms for
ATP5J2-PTCD1

Expression for ATP5J2-PTCD1 Gene

mRNA expression in normal human tissues for ATP5J2-PTCD1 Gene

Integrated Proteomics: protein expression from PaxDb and MaxQB for ATP5J2-PTCD1 Gene

genes like me logo Genes that share expressions with ATP5J2-PTCD1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ATP5J2-PTCD1 Gene

Orthologs for ATP5J2-PTCD1 Gene

This gene was present in the common ancestor of animals.

Orthologs for ATP5J2-PTCD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 99 (a)
OneToMany
ATP5J2 35
  • 99.24 (n)
  • 98.66 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 78 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 76 (a)
OneToMany
PTCD1 35
  • 81.16 (n)
  • 77.85 (a)
mouse
(Mus musculus)
Mammalia Ptcd1 35
  • 79.52 (n)
  • 74.53 (a)
Ptcd1 16
Ptcd1 36
  • 73 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 57 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 46 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Ptcd1 35
  • 78.47 (n)
  • 74.92 (a)
chicken
(Gallus gallus)
Aves -- 36
  • 55 (a)
OneToMany
PTCD1 35
  • 63.01 (n)
  • 61.93 (a)
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 53 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia ptcd1 35
  • 57.17 (n)
  • 52.83 (a)
zebrafish
(Danio rerio)
Actinopterygii ptcd1 35
  • 55.15 (n)
  • 48.6 (a)
ptcd1 36
  • 45 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006051 35
  • 50.93 (n)
  • 35.46 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG4611 35
  • 48.84 (n)
  • 34.46 (a)
CG4611 36
  • 26 (a)
OneToMany
Species with no ortholog for ATP5J2-PTCD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ATP5J2-PTCD1 Gene

ENSEMBL:
Gene Tree for ATP5J2-PTCD1 (if available)
TreeFam:
Gene Tree for ATP5J2-PTCD1 (if available)

Paralogs for ATP5J2-PTCD1 Gene

Selected SIMAP similar genes for ATP5J2-PTCD1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ATP5J2-PTCD1: view

No data available for Paralogs for ATP5J2-PTCD1 Gene

Variants for ATP5J2-PTCD1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ATP5J2-PTCD1 Gene

Variant ID Type Subtype PubMed ID
nsv831069 CNV Loss 17160897
nsv5864 CNV Insertion 18451855
dgv7396n71 CNV Loss 21882294
dgv7397n71 CNV Loss 21882294
esv2734882 CNV Deletion 23290073

Relevant External Links for ATP5J2-PTCD1 Gene

HapMap Linkage Disequilibrium report
ATP5J2-PTCD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for ATP5J2-PTCD1 Gene

Disorders for ATP5J2-PTCD1 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for ATP5J2-PTCD1 Gene including...

Search for ATP5J2-PTCD1 Gene in MalaCards »
genes like me logo Genes that share disorders with ATP5J2-PTCD1: view

No data available for UniProtKB/Swiss-Prot for ATP5J2-PTCD1 Gene

Publications for ATP5J2-PTCD1 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3
  2. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3
  3. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  4. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3
  5. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3

Products for ATP5J2-PTCD1 Gene

Sources for ATP5J2-PTCD1 Gene

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