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Aliases for ATP2C2-AS1 Gene

Subcategory (RNA class) for ATP2C2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ATP2C2-AS1 Gene

  • ATP2C2 Antisense RNA 1 2 3
  • RP11-517C16.2-001 3
  • RP11-517C16.2 5

External Ids for ATP2C2-AS1 Gene

Summaries for ATP2C2-AS1 Gene

GeneCards Summary for ATP2C2-AS1 Gene

ATP2C2-AS1 (ATP2C2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with ATP2C2-AS1 include Retinitis Pigmentosa 11.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP2C2-AS1 Gene

Genomics for ATP2C2-AS1 Gene

Regulatory Elements for ATP2C2-AS1 Gene

Enhancers for ATP2C2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G084477 0.9 ENCODE 15.7 -10.1 -10109 1.6 HDAC1 RB1 CREB3L1 ARID4B SIN3A ZNF48 RAD21 YY1 ZNF366 EGR1 ATP2C2-AS1 USP10 KCNG4 DNAAF1 HSDL1 PIR39222
GH16G084474 0.8 ENCODE 14.2 -7.2 -7190 1.4 PKNOX1 NFIB ARID4B SIN3A RAD21 RARA RCOR1 IKZF2 CBFB GATAD2B ATP2C2-AS1 PIR39222
GH16G084825 1.8 FANTOM5 Ensembl ENCODE dbSUPER 5.6 -364.8 -364829 15.3 PKNOX1 ATF1 SIN3A ZNF121 ZNF302 ZMIZ1 FOS MIER2 REST ZNF592 CRISPLD2 ZDHHC7 ENSG00000260859 ATP2C2-AS1 LOC123862
GH16G084512 1.6 FANTOM5 Ensembl ENCODE 6.2 -45.8 -45839 4.3 HDGF PKNOX1 WRNIP1 SIN3A ELK1 ZNF143 ZNF207 FOS ZNF263 ZHX2 ATP2C2-AS1 COTL1 ENSG00000261243 TLDC1
GH16G084510 1.5 FANTOM5 Ensembl ENCODE 6.5 -43.1 -43088 1.2 WRNIP1 ARID4B SIN3A ZNF48 YY1 ZNF143 REST SMARCA4 GLIS1 NBN ATP2C2-AS1 TLDC1 ENSG00000261243
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ATP2C2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ATP2C2-AS1 Gene

Chromosome:
16
Start:
84,459,259 bp from pter
End:
84,468,407 bp from pter
Size:
9,149 bases
Orientation:
Minus strand

Genomic View for ATP2C2-AS1 Gene

Genes around ATP2C2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP2C2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP2C2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP2C2-AS1 Gene

Proteins for ATP2C2-AS1 Gene

Post-translational modifications for ATP2C2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP2C2-AS1 Gene

Domains & Families for ATP2C2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP2C2-AS1 Gene

Function for ATP2C2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP2C2-AS1 Gene

Localization for ATP2C2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ATP2C2-AS1 Gene

Pathways & Interactions for ATP2C2-AS1 Gene

SuperPathways for ATP2C2-AS1 Gene

No Data Available

Interacting Proteins for ATP2C2-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP2C2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP2C2-AS1 Gene

Drugs & Compounds for ATP2C2-AS1 Gene

No Compound Related Data Available

Transcripts for ATP2C2-AS1 Gene

mRNA/cDNA for ATP2C2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP2C2-AS1 Gene

No ASD Table

Relevant External Links for ATP2C2-AS1 Gene

GeneLoc Exon Structure for
ATP2C2-AS1
ECgene alternative splicing isoforms for
ATP2C2-AS1

Expression for ATP2C2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP2C2-AS1 Gene

Orthologs for ATP2C2-AS1 Gene

Evolution for ATP2C2-AS1 Gene

ENSEMBL:
Gene Tree for ATP2C2-AS1 (if available)
TreeFam:
Gene Tree for ATP2C2-AS1 (if available)

No data available for Orthologs for ATP2C2-AS1 Gene

Paralogs for ATP2C2-AS1 Gene

No data available for Paralogs for ATP2C2-AS1 Gene

Variants for ATP2C2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP2C2-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000221061 -- 84,464,815(+) TCTCT(C/T)AGGAA intron-variant, utr-variant-3-prime
rs1000392899 -- 84,460,208(+) TCACC(C/T)GGCCA intron-variant, nc-transcript-variant
rs1000696788 -- 84,462,454(+) ACTCA(C/G)CCTGG intron-variant, nc-transcript-variant
rs1001142245 -- 84,467,354(+) CAGGC(C/T)TTCTG nc-transcript-variant
rs1001329478 -- 84,460,187(+) CTGTG(C/T)CTGAG intron-variant, nc-transcript-variant

Relevant External Links for ATP2C2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP2C2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ATP2C2-AS1 Gene

Disorders for ATP2C2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ATP2C2-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ATP2C2-AS1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ATP2C2-AS1 Gene

Publications for ATP2C2-AS1 Gene

  1. The Effect of Botulinum Toxin Type A on Expression Profiling of Long Noncoding RNAs in Human Dermal Fibroblasts. (PMID: 28265570) Miao Y.Y. … Zhou B.R. (Biomed Res Int 2017) 2 3 64

Products for ATP2C2-AS1 Gene

Sources for ATP2C2-AS1 Gene

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