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Aliases for ATP2C2-AS1 Gene

Subcategory (RNA class) for ATP2C2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ATP2C2-AS1 Gene

  • ATP2C2 Antisense RNA 1 2 3 5
  • RP11-517C16.2-001 3

External Ids for ATP2C2-AS1 Gene

Summaries for ATP2C2-AS1 Gene

GeneCards Summary for ATP2C2-AS1 Gene

ATP2C2-AS1 (ATP2C2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ATP2C2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP2C2-AS1 Gene

Genomics for ATP2C2-AS1 Gene

Regulatory Elements for ATP2C2-AS1 Gene

Enhancers for ATP2C2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H084474 0.8 ENCODE 14.2 -7.2 -7190 1.4 SOX13 PKNOX1 ESRRA NFIB ARID4B SIN3A RARA TEAD3 CTBP1 GATA3 ATP2C2-AS1 USP10 PIR39222
GH16H084477 0.7 ENCODE 15.7 -10.1 -10109 1.6 MAFG MNT ZFHX2 ZNF316 EGR1 IKZF1 FOS FOSL2 MAFK EMSY ATP2C2-AS1 USP10 KCNG4 DNAAF1 HSDL1 PIR39222
GH16H084825 1.8 FANTOM5 Ensembl ENCODE dbSUPER 5.6 -364.8 -364829 15.3 PKNOX1 ATF1 BMI1 RAD21 ZNF121 EGR1 SCRT2 RCOR1 FOS ATF7 CRISPLD2 GSE1 ZDHHC7 ENSG00000260859 ATP2C2-AS1 LOC123862
GH16H084512 1.5 FANTOM5 Ensembl ENCODE 6.2 -45.8 -45839 4.3 ELF3 HDGF TBL1XR1 RB1 SIN3A BMI1 DNMT3B ZNF143 ZNF207 ATF7 ENSG00000260859 ATP2C2-AS1 COTL1 ENSG00000261243 TLDC1
GH16H084510 1.4 FANTOM5 Ensembl ENCODE 6.5 -43.1 -43088 1.2 HDAC1 ELF3 RB1 ARID4B SIN3A ZBTB40 RAD21 RFX5 YY1 ZNF366 ATP2C2-AS1 TLDC1 ENSG00000261243
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ATP2C2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATP2C2-AS1 Gene

Genomic Locations for ATP2C2-AS1 Gene
chr16:84,459,259-84,468,407
(GRCh38/hg38)
Size:
9,149 bases
Orientation:
Minus strand
chr16:84,492,865-84,500,967
(GRCh37/hg19)

Genomic View for ATP2C2-AS1 Gene

Genes around ATP2C2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP2C2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP2C2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP2C2-AS1 Gene

Proteins for ATP2C2-AS1 Gene

Post-translational modifications for ATP2C2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP2C2-AS1 Gene

Domains & Families for ATP2C2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP2C2-AS1 Gene

Function for ATP2C2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP2C2-AS1 Gene

Localization for ATP2C2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP2C2-AS1 Gene

Pathways & Interactions for ATP2C2-AS1 Gene

SuperPathways for ATP2C2-AS1 Gene

No Data Available

Interacting Proteins for ATP2C2-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP2C2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP2C2-AS1 Gene

Drugs & Compounds for ATP2C2-AS1 Gene

No Compound Related Data Available

Transcripts for ATP2C2-AS1 Gene

mRNA/cDNA for ATP2C2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP2C2-AS1 Gene

No ASD Table

Relevant External Links for ATP2C2-AS1 Gene

GeneLoc Exon Structure for
ATP2C2-AS1
ECgene alternative splicing isoforms for
ATP2C2-AS1

Expression for ATP2C2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP2C2-AS1 Gene

Orthologs for ATP2C2-AS1 Gene

Evolution for ATP2C2-AS1 Gene

ENSEMBL:
Gene Tree for ATP2C2-AS1 (if available)
TreeFam:
Gene Tree for ATP2C2-AS1 (if available)

No data available for Orthologs for ATP2C2-AS1 Gene

Paralogs for ATP2C2-AS1 Gene

No data available for Paralogs for ATP2C2-AS1 Gene

Variants for ATP2C2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP2C2-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000221061 -- 84,464,815(+) TCTCT(C/T)AGGAA intron-variant, utr-variant-3-prime
rs1000392899 -- 84,460,208(+) TCACC(C/T)GGCCA intron-variant, nc-transcript-variant
rs1000696788 -- 84,462,454(+) ACTCA(C/G)CCTGG intron-variant, nc-transcript-variant
rs1001142245 -- 84,467,354(+) CAGGC(C/T)TTCTG nc-transcript-variant
rs1001329478 -- 84,460,187(+) CTGTG(C/T)CTGAG intron-variant, nc-transcript-variant

Relevant External Links for ATP2C2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP2C2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ATP2C2-AS1 Gene

Disorders for ATP2C2-AS1 Gene

Relevant External Links for ATP2C2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ATP2C2-AS1

No disorders were found for ATP2C2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP2C2-AS1 Gene

Publications for ATP2C2-AS1 Gene

  1. The Effect of Botulinum Toxin Type A on Expression Profiling of Long Noncoding RNAs in Human Dermal Fibroblasts. (PMID: 28265570) Miao YY … Zhou BR (BioMed research international 2017) 2 3 60

Products for ATP2C2-AS1 Gene

Sources for ATP2C2-AS1 Gene

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