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Aliases for ATP2C2 Gene

Aliases for ATP2C2 Gene

  • ATPase Secretory Pathway Ca2+ Transporting 2 2 3 5
  • ATPase, Ca++ Transporting, Type 2C, Member 2 2 3
  • Secretory Pathway Calcium ATPase 2 2 3
  • Secretory Pathway Ca(2+)-ATPase 2 3 4
  • ATPase 2C2 3 4
  • EC 4 61
  • SPCA2 3 4
  • Calcium-Transporting ATPase Type 2C Member 2 3
  • KIAA0703 4
  • EC 3.6.3 61

External Ids for ATP2C2 Gene

Previous GeneCards Identifiers for ATP2C2 Gene

  • GC16P082995
  • GC16P070154

Summaries for ATP2C2 Gene

GeneCards Summary for ATP2C2 Gene

ATP2C2 (ATPase Secretory Pathway Ca2+ Transporting 2) is a Protein Coding gene. Diseases associated with ATP2C2 include Speech And Communication Disorders and Specific Language Impairment. Among its related pathways are Ion channel transport and Cardiac conduction. GO annotations related to this gene include nucleotide binding and calcium-transporting ATPase activity. An important paralog of this gene is ATP2C1.

UniProtKB/Swiss-Prot for ATP2C2 Gene

  • This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP2C2 Gene

Genomics for ATP2C2 Gene

Regulatory Elements for ATP2C2 Gene

Enhancers for ATP2C2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F084368 1 Ensembl ENCODE 27.3 +1.0 1031 3.8 USF1 TEAD4 SIN3A CEBPG ZBTB40 ZNF121 E2F1 ZNF316 GATA3 CTBP1 ATP2C2 KCNG4 GC16P084460
GH16F084390 1 FANTOM5 12.1 +22.1 22063 0.2 GABPA NR2C2 ATP2C2 MLYCD NECAB2 GC16P084460
GH16F084349 0.4 ENCODE 9.4 -18.4 -18369 1.0 RFX1 ZNF24 ATP2C2 OSGIN1 ENSG00000260504
GH16F084356 0.8 Ensembl ENCODE 8.9 -11.7 -11723 0.8 SOX13 ESRRA ZKSCAN1 CTBP1 RERE RCOR1 SOX5 RFX1 HMG20B KLF4 ATP2C2 ENSG00000260504
GH16F084360 0.8 FANTOM5 Ensembl 8.1 -8.1 -8123 0.4 ATP2C2 COTL1 OSGIN1 CRISPLD2 ENSG00000260504
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ATP2C2 on UCSC Golden Path with GeneCards custom track

Promoters for ATP2C2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001803490 -23 601 RFX1 USF1 KLF4 ZBTB40 E2F1 RAD51 POLR2A RCOR1 KDM1A EZH2

Genomic Location for ATP2C2 Gene

84,368,523 bp from pter
84,464,187 bp from pter
95,665 bases
Plus strand

Genomic View for ATP2C2 Gene

Genes around ATP2C2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP2C2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP2C2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP2C2 Gene

Proteins for ATP2C2 Gene

  • Protein details for ATP2C2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Calcium-transporting ATPase type 2C member 2
    Protein Accession:
    Secondary Accessions:
    • B4DU76
    • E7ES94
    • Q5HYC3
    • Q5S053
    • Q68CQ2

    Protein attributes for ATP2C2 Gene

    946 amino acids
    Molecular mass:
    103187 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAA31678.2; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for ATP2C2 Gene


neXtProt entry for ATP2C2 Gene

Post-translational modifications for ATP2C2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ATP2C2 Gene

Antibody Products

Domains & Families for ATP2C2 Gene

Gene Families for ATP2C2 Gene

Suggested Antigen Peptide Sequences for ATP2C2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIA subfamily.
  • Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIA subfamily.
genes like me logo Genes that share domains with ATP2C2: view

Function for ATP2C2 Gene

Molecular function for ATP2C2 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + H(2)O + Ca(2+)(Side 1) = ADP + phosphate + Ca(2+)(Side 2).
UniProtKB/Swiss-Prot Function:
This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.

Enzyme Numbers (IUBMB) for ATP2C2 Gene

Gene Ontology (GO) - Molecular Function for ATP2C2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0005388 calcium-transporting ATPase activity IEA,IBA --
GO:0005515 protein binding IPI 20887894
GO:0005524 ATP binding IEA --
GO:0015410 manganese-transporting ATPase activity IBA --
genes like me logo Genes that share ontologies with ATP2C2: view
genes like me logo Genes that share phenotypes with ATP2C2: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP2C2 Gene

Localization for ATP2C2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ATP2C2 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

Jensen Localization Image for ATP2C2 Gene COMPARTMENTS Subcellular localization image for ATP2C2 gene
Compartment Confidence
plasma membrane 5
golgi apparatus 4
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for ATP2C2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane TAS --
GO:0005887 integral component of plasma membrane IBA --
GO:0009898 cytoplasmic side of plasma membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with ATP2C2: view

Pathways & Interactions for ATP2C2 Gene

genes like me logo Genes that share pathways with ATP2C2: view

Pathways by source for ATP2C2 Gene

Gene Ontology (GO) - Biological Process for ATP2C2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0006811 ion transport IEA --
GO:0006816 calcium ion transport IEA --
GO:0006874 cellular calcium ion homeostasis IBA --
GO:0034220 ion transmembrane transport TAS --
genes like me logo Genes that share ontologies with ATP2C2: view

No data available for SIGNOR curated interactions for ATP2C2 Gene

Drugs & Compounds for ATP2C2 Gene

(2) Drugs for ATP2C2 Gene - From: HMDB and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
calcium Nutra 0
Magnesium Nutra 0
genes like me logo Genes that share compounds with ATP2C2: view

Transcripts for ATP2C2 Gene

Unigene Clusters for ATP2C2 Gene

ATPase, Ca++ transporting, type 2C, member 2:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ATP2C2 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16a · 16b ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^
SP1: - - -
SP2: - -

ExUns: 24a · 24b · 24c ^ 25 ^ 26a · 26b ^ 27a · 27b
SP1: -
SP2: -
SP3: -

Relevant External Links for ATP2C2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ATP2C2 Gene

mRNA expression in normal human tissues for ATP2C2 Gene

mRNA differential expression in normal tissues according to GTEx for ATP2C2 Gene

This gene is overexpressed in Colon - Transverse (x10.7), Skin - Not Sun Exposed (Suprapubic) (x5.2), and Skin - Sun Exposed (Lower leg) (x5.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ATP2C2 Gene

NURSA nuclear receptor signaling pathways regulating expression of ATP2C2 Gene:


SOURCE GeneReport for Unigene cluster for ATP2C2 Gene:

genes like me logo Genes that share expression patterns with ATP2C2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ATP2C2 Gene

Orthologs for ATP2C2 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ATP2C2 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ATP2C2 34 35
  • 99.08 (n)
(Monodelphis domestica)
Mammalia ATP2C2 35
  • 87 (a)
(Canis familiaris)
Mammalia ATP2C2 34 35
  • 86.14 (n)
(Bos Taurus)
Mammalia ATP2C2 34 35
  • 85.4 (n)
(Ornithorhynchus anatinus)
Mammalia ATP2C2 35
  • 85 (a)
(Rattus norvegicus)
Mammalia Atp2c2 34
  • 82.29 (n)
(Mus musculus)
Mammalia Atp2c2 34 16 35
  • 81.97 (n)
(Gallus gallus)
Aves ATP2C2 34 35
  • 74.76 (n)
(Anolis carolinensis)
Reptilia ATP2C2 35
  • 76 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia atp2c2 34
  • 69.77 (n)
(Danio rerio)
Actinopterygii si:dkey-28b4.8 35
  • 29 (a)
fruit fly
(Drosophila melanogaster)
Insecta SPoCk 35
  • 49 (a)
(Caenorhabditis elegans)
Secernentea pmr-1 35
  • 50 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PMR1 35
  • 47 (a)
PMA1 37
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 58 (a)
Species where no ortholog for ATP2C2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ATP2C2 Gene

Gene Tree for ATP2C2 (if available)
Gene Tree for ATP2C2 (if available)

Paralogs for ATP2C2 Gene

Paralogs for ATP2C2 Gene

(8) SIMAP similar genes for ATP2C2 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ATP2C2: view

Variants for ATP2C2 Gene

Sequence variations from dbSNP and Humsavar for ATP2C2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1001655 -- 84,407,803(-) AAGAT(C/T)AGGAT intron-variant
rs1008994 -- 84,417,251(+) TGTGG(C/G)GGCTG intron-variant
rs10459853 -- 84,383,036(+) GCCTC(C/G)TCTCC intron-variant
rs10514604 -- 84,412,778(+) CATAC(C/G)TGGCT intron-variant
rs10514605 -- 84,413,251(+) GTATA(A/T)ATCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ATP2C2 Gene

Variant ID Type Subtype PubMed ID
dgv169n21 CNV loss 19592680
dgv3057n100 CNV loss 25217958
dgv5262n54 CNV loss 21841781
dgv5263n54 CNV loss 21841781
dgv547e214 CNV loss 21293372
dgv548e214 CNV gain 21293372
dgv549e214 CNV gain 21293372
esv2659934 CNV deletion 23128226
esv26698 CNV loss 19812545
esv2677840 CNV deletion 23128226
esv33856 CNV gain 17666407
esv3582418 CNV loss 25503493
esv3639422 CNV loss 21293372
esv3639423 CNV loss 21293372
esv3639424 CNV gain 21293372
esv3639427 CNV loss 21293372
esv3892928 CNV loss 25118596
nsv1056072 CNV loss 25217958
nsv1059640 CNV loss 25217958
nsv1060813 CNV loss 25217958
nsv1061004 CNV loss 25217958
nsv1064308 CNV loss 25217958
nsv1064677 CNV loss 25217958
nsv1065249 CNV gain 25217958
nsv1066356 CNV loss 25217958
nsv1123075 CNV deletion 24896259
nsv1127521 CNV deletion 24896259
nsv457598 CNV loss 19166990
nsv457599 CNV gain 19166990
nsv457600 CNV loss 19166990
nsv457603 CNV loss 19166990
nsv471107 CNV gain 18288195
nsv483044 CNV gain 15286789
nsv517727 CNV loss 19592680
nsv523226 CNV loss 19592680
nsv524545 CNV loss 19592680
nsv524729 CNV loss 19592680
nsv527957 CNV loss 19592680
nsv573425 CNV loss 21841781
nsv573427 CNV loss 21841781
nsv573428 CNV gain 21841781
nsv573430 CNV loss 21841781
nsv573434 CNV loss 21841781
nsv573436 CNV loss 21841781
nsv817746 CNV gain 17921354
nsv827781 CNV gain 20364138
nsv833310 CNV loss 17160897

Variation tolerance for ATP2C2 Gene

Residual Variation Intolerance Score: 86.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 12.28; 94.09% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ATP2C2 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ATP2C2 Gene

Disorders for ATP2C2 Gene

MalaCards: The human disease database

(3) MalaCards diseases for ATP2C2 Gene - From: DISEASES

Disorder Aliases PubMed IDs
speech and communication disorders
  • communication disorder
specific language impairment
reading disorder
  • specific reading disorder
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for ATP2C2

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with ATP2C2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ATP2C2 Gene

Publications for ATP2C2 Gene

  1. The secretory pathway Ca2+/Mn2+-ATPase 2 is a Golgi-localized pump with high affinity for Ca2+ ions. (PMID: 15831496) Vanoevelen J. … Wuytack F. (J. Biol. Chem. 2005) 3 4 22 64
  2. Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PMID: 9734811) Ishikawa K. … Ohara O. (DNA Res. 1998) 2 3 4 64
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  4. CMIP and ATP2C2 modulate phonological short-term memory in language impairment. (PMID: 19646677) Newbury D.F. … Monaco A.P. (Am. J. Hum. Genet. 2009) 3 22 64
  5. A high-density association screen of 155 ion transport genes for involvement with common migraine. (PMID: 18676988) Nyholt D.R. … Palotie A. (Hum. Mol. Genet. 2008) 3 46 64

Products for ATP2C2 Gene

Sources for ATP2C2 Gene

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