Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ATP2C1 Gene

Aliases for ATP2C1 Gene

  • ATPase, Ca++ Transporting, Type 2C, Member 1 2 3
  • Secretory Pathway Ca2+/Mn2+ ATPase 1 2 3
  • ATP-Dependent Ca(2+) Pump PMR1 3 4
  • ATPase 2C1 3 4
  • EC 3.6.3.8 4 63
  • Benign Chronic Pemphigus (Hailey-Hailey Disease) 2
  • Calcium-Transporting ATPase Type 2C Member 1 2
  • ATPase, Ca(2+)-Sequestering 3
  • HUSSY-28 3
  • KIAA1347 4
  • EC 3.6.3 63
  • ATP2C1A 3
  • HSPCA1 3
  • SPCA1 3
  • PMR1L 4
  • PMR1 3
  • BCPM 3
  • HHD 3

External Ids for ATP2C1 Gene

Previous HGNC Symbols for ATP2C1 Gene

  • BCPM

Previous GeneCards Identifiers for ATP2C1 Gene

  • GC03P127524
  • GC03P131329
  • GC03P131851
  • GC03P131933
  • GC03P131934
  • GC03P132095
  • GC03P130613
  • GC03P127997
  • GC03P130571

Summaries for ATP2C1 Gene

Entrez Gene Summary for ATP2C1 Gene

  • The protein encoded by this gene belongs to the family of P-type cation transport ATPases. This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium ions. Defects in this gene cause Hailey-Hailey disease, an autosomal dominant disorder. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Aug 2011]

GeneCards Summary for ATP2C1 Gene

ATP2C1 (ATPase, Ca++ Transporting, Type 2C, Member 1) is a Protein Coding gene. Diseases associated with ATP2C1 include hailey-hailey disease and darier disease. Among its related pathways are CREB Pathway and Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds. GO annotations related to this gene include calcium ion binding and signal transducer activity. An important paralog of this gene is ATP2A2.

UniProtKB/Swiss-Prot for ATP2C1 Gene

  • This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium

Gene Wiki entry for ATP2C1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP2C1 Gene

Genomics for ATP2C1 Gene

Regulatory Elements for ATP2C1 Gene

Transcription factor binding sites by QIAGEN in the ATP2C1 gene promoter:

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ATP2C1 Gene

Chromosome:
3
Start:
130,850,483 bp from pter
End:
131,016,712 bp from pter
Size:
166,230 bases
Orientation:
Plus strand

Genomic View for ATP2C1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ATP2C1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP2C1 Gene

Proteins for ATP2C1 Gene

  • Protein details for ATP2C1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P98194-AT2C1_HUMAN
    Recommended name:
    Calcium-transporting ATPase type 2C member 1
    Protein Accession:
    P98194
    Secondary Accessions:
    • B2RAT7
    • B4DSW3
    • B7Z3X9
    • G3XAH8
    • G8JLN9
    • O76005
    • Q86V72
    • Q86V73
    • Q8N6V1
    • Q8NCJ7

    Protein attributes for ATP2C1 Gene

    Size:
    919 amino acids
    Molecular mass:
    100577 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA92585.1; Type=Frameshift; Positions=8; Evidence={ECO:0000305}; Sequence=BAC11142.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for ATP2C1 Gene

neXtProt entry for ATP2C1 Gene

Proteomics data for ATP2C1 Gene at MOPED

Post-translational modifications for ATP2C1 Gene

  • Ubiquitination at Lys 229, Lys 496, and Lys 907
  • Modification sites at PhosphoSitePlus

Antibody Products

Domains & Families for ATP2C1 Gene

Gene Families for ATP2C1 Gene

HGNC:
IUPHAR :

Graphical View of Domain Structure for InterPro Entry

P98194

UniProtKB/Swiss-Prot:

AT2C1_HUMAN :
  • Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIA subfamily.
Family:
  • Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIA subfamily.
genes like me logo Genes that share domains with ATP2C1: view

Function for ATP2C1 Gene

Molecular function for ATP2C1 Gene

GENATLAS Biochemistry:
ATPase,Ca 2+ transporting,highly expressed in epidermal keratinocytes with two alternatively spliced transcripts,ATPC1a,ATPC1b,homolog to the yeast calcium pump Pmr1,sequestering calcium into the Golgi in yeast
UniProtKB/Swiss-Prot CatalyticActivity:
ATP + H(2)O + Ca(2+)(Side 1) = ADP + phosphate + Ca(2+)(Side 2)
UniProtKB/Swiss-Prot Function:
This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium

Enzyme Numbers (IUBMB) for ATP2C1 Gene

Gene Ontology (GO) - Molecular Function for ATP2C1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding --
GO:0004871 signal transducer activity IMP 12761501
GO:0005388 calcium-transporting ATPase activity IMP 10615129
GO:0005509 calcium ion binding IDA 12707275
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with ATP2C1: view
genes like me logo Genes that share phenotypes with ATP2C1: view

Animal Models for ATP2C1 Gene

MGI Knock Outs for ATP2C1:

Animal Model Products

CRISPR Products

miRNA for ATP2C1 Gene

miRTarBase miRNAs that target ATP2C1

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ATP2C1

In Situ Assay Products

Flow Cytometry Products

No data available for Transcription Factor Targets and HOMER Transcription for ATP2C1 Gene

Localization for ATP2C1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ATP2C1 Gene

Golgi apparatus membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ATP2C1 Gene COMPARTMENTS Subcellular localization image for ATP2C1 gene
Compartment Confidence
golgi apparatus 5
cytosol 3
endoplasmic reticulum 2
nucleus 2
plasma membrane 2
extracellular 1
mitochondrion 1
vacuole 1

Gene Ontology (GO) - Cellular Components for ATP2C1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane TAS --
GO:0005794 Golgi apparatus IDA 11741891
GO:0005802 trans-Golgi network IDA 14632183
GO:0005887 integral component of plasma membrane IBA --
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with ATP2C1: view

Pathways & Interactions for ATP2C1 Gene

genes like me logo Genes that share pathways with ATP2C1: view

Pathways by source for ATP2C1 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Interacting Proteins for ATP2C1 Gene

Selected Interacting proteins: P98194-AT2C1_HUMAN for ATP2C1 Gene via I2D

Gene Ontology (GO) - Biological Process for ATP2C1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006816 calcium ion transport IMP 10615129
GO:0006828 manganese ion transport IDA 12707275
GO:0006874 cellular calcium ion homeostasis IMP 10615129
GO:0007165 signal transduction IMP 12761501
GO:0008152 metabolic process IEA --
genes like me logo Genes that share ontologies with ATP2C1: view

No data available for SIGNOR curated interactions for ATP2C1 Gene

Drugs & Compounds for ATP2C1 Gene

(13) Drugs for ATP2C1 Gene - From: HMDB, NovoSeek, DrugBank, and DGIdb

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Desflurane Approved Pharma antagonist, Target, inhibitor 110
Enflurane Approved Pharma Target, inhibitor 2
Isoflurane Approved Pharma agonist, Target, inhibitor 80
Sevoflurane Approved Pharma antagonist, Target, inhibitor 381
Methoxyflurane Approved Pharma Target, inhibitor 4

(5) Additional Compounds for ATP2C1 Gene - From: HMDB and NovoSeek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Antagonist, Gating inhibitor 58-64-0
Phosphate
  • NFB Orthophosphate
  • O-Phosphoric acid
  • Ortho-phosphate
  • Orthophosphate (PO43-)
  • Orthophosphate(3-)
14265-44-2
trifluoroacetic acid
  • Acide trifluoroacetique
  • CF3COOH
  • Kyselina trifluoroctova
  • Perfluoroacetic acid
  • Trifluoracetic acid
76-05-1
Water
  • Dihydrogen oxide
  • Steam
7732-18-5
AEQUORIN
genes like me logo Genes that share compounds with ATP2C1: view

Transcripts for ATP2C1 Gene

Unigene Clusters for ATP2C1 Gene

ATPase, Ca++ transporting, type 2C, member 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ATP2C1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ATP2C1 Gene

No ASD Table

Relevant External Links for ATP2C1 Gene

GeneLoc Exon Structure for
ATP2C1
ECgene alternative splicing isoforms for
ATP2C1

Expression for ATP2C1 Gene

mRNA expression in normal human tissues for ATP2C1 Gene

Protein differential expression in normal tissues from HIPED for ATP2C1 Gene

This gene is overexpressed in Breast (49.5) and Peripheral blood mononuclear cells (12.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for ATP2C1 Gene



SOURCE GeneReport for Unigene cluster for ATP2C1 Gene Hs.584884

mRNA Expression by UniProt/SwissProt for ATP2C1 Gene

P98194-AT2C1_HUMAN
Tissue specificity: Found in most tissues except colon, thymus, spleen and leukocytes. Most abundant in keratinocytes and kidney
genes like me logo Genes that share expression patterns with ATP2C1: view

Protein tissue co-expression partners for ATP2C1 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for ATP2C1 Gene

Orthologs for ATP2C1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ATP2C1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ATP2C1 35
  • 94.33 (n)
  • 98.01 (a)
ATP2C1 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ATP2C1 35
  • 94.61 (n)
  • 98.01 (a)
ATP2C1 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Atp2c1 35
  • 90.76 (n)
  • 96.22 (a)
Atp2c1 16
Atp2c1 36
  • 95 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ATP2C1 35
  • 99.89 (n)
  • 99.89 (a)
ATP2C1 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Atp2c1 35
  • 91.07 (n)
  • 97.06 (a)
oppossum
(Monodelphis domestica)
Mammalia ATP2C1 36
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ATP2C1 36
  • 93 (a)
OneToOne
chicken
(Gallus gallus)
Aves ATP2C1 35
  • 83.95 (n)
  • 91.94 (a)
ATP2C1 36
  • 90 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ATP2C1 36
  • 91 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia atp2c1 35
  • 79.18 (n)
  • 88.1 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.19533 35
zebrafish
(Danio rerio)
Actinopterygii atp2c1 35
  • 71.62 (n)
  • 82.4 (a)
atp2c1 36
  • 81 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP012115 35
  • 58.53 (n)
  • 64.07 (a)
fruit fly
(Drosophila melanogaster)
Insecta SPoCk 35
  • 58.19 (n)
  • 62.93 (a)
SPoCk 36
  • 54 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea pmr-1 35
  • 58.42 (n)
  • 59.25 (a)
pmr-1 36
  • 53 (a)
OneToMany
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AEL301W 35
  • 53.1 (n)
  • 50.87 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0A03157g 35
  • 54.93 (n)
  • 51.28 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PMR1 35
  • 54.12 (n)
  • 50.83 (a)
PMR1 36
  • 48 (a)
OneToMany
PMR1 38
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.11114 35
bread mold
(Neurospora crassa)
Ascomycetes NCU03292 35
  • 53.89 (n)
  • 54.21 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes pmr1 35
  • 56.29 (n)
  • 53.63 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 62 (a)
OneToMany
Species with no ortholog for ATP2C1:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ATP2C1 Gene

ENSEMBL:
Gene Tree for ATP2C1 (if available)
TreeFam:
Gene Tree for ATP2C1 (if available)

Paralogs for ATP2C1 Gene

Paralogs for ATP2C1 Gene

genes like me logo Genes that share paralogs with ATP2C1: view

Variants for ATP2C1 Gene

Sequence variations from dbSNP and Humsavar for ATP2C1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs177951 -- 131,001,063(-) tgcag(G/T)ggcat intron-variant
rs177952 -- 130,956,610(-) ATGAC(A/C)AAAAA intron-variant
rs190067 -- 131,011,520(-) CCTTT(C/G)CAAAA intron-variant
rs218481 -- 131,003,359(-) TTAGA(C/T)ACTAG intron-variant, downstream-variant-500B
rs218482 -- 130,990,622(+) acacg(C/T)gatct intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ATP2C1 Gene

Variant ID Type Subtype PubMed ID
esv2670135 CNV Deletion 23128226
esv2562128 CNV Deletion 19546169
esv2418561 CNV Deletion 18987734

Variation tolerance for ATP2C1 Gene

Residual Variation Intolerance Score: 7.05% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.97; 68.19% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ATP2C1 Gene

HapMap Linkage Disequilibrium report
ATP2C1
Human Gene Mutation Database (HGMD)
ATP2C1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ATP2C1 Gene

Disorders for ATP2C1 Gene

MalaCards: The human disease database

(5) MalaCards diseases for ATP2C1 Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, NovoSeek, and GeneCards

Disorder Aliases PubMed IDs
hailey-hailey disease
  • pemphigus, benign familial
darier disease
  • keratosis follicularis
lung mucoepidermoid carcinoma
pemphigus
skin disease
  • dermatitis due to substances taken internally
- elite association

UniProtKB/Swiss-Prot

AT2C1_HUMAN
  • Hailey-Hailey disease (HHD) [MIM:169600]: Autosomal dominant disorder characterized by persistent blisters and suprabasal cell separation (acantholysis) of the epidermis, due to impaired keratinocyte adhesion. Patients lacking all isoforms except isoform 2 have HHD. {ECO:0000269 PubMed:10615129, ECO:0000269 PubMed:10767338, ECO:0000269 PubMed:11841554, ECO:0000269 PubMed:11874499}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for ATP2C1

Human Genome Epidemiology (HuGE) Navigator
ATP2C1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ATP2C1
genes like me logo Genes that share disorders with ATP2C1: view

No data available for Genatlas for ATP2C1 Gene

Publications for ATP2C1 Gene

  1. Hailey-Hailey disease is caused by mutations in ATP2C1 encoding a novel Ca(2+) pump. (PMID: 10767338) Sudbrak R. … Monaco A.P. (Hum. Mol. Genet. 2000) 2 23 67
  2. Mutations in ATP2C1, encoding a calcium pump, cause Hailey-Hailey disease. (PMID: 10615129) Hu Z. … Epstein E.H. Jr. (Nat. Genet. 2000) 2 23 67
  3. Six novel ATP2C1 mutations identified in Chinese patients with Hailey-Hailey disease. (PMID: 20226632) Tian H. … Zhang F. (J. Dermatol. Sci. 2010) 23 67
  4. Exacerbation of Darier disease by lithium carbonate. (PMID: 20338123) Ngo J. … Haber R. (J Cutan Med Surg 2010) 23 67
  5. [Benign familial chronic pemphigus (Hailey-Hailey disease). Treatment with carbon dioxide laser]. (PMID: 20390242) Pissoat L. … HAPller Obrigkeit D. (Hautarzt 2010) 23 67

Products for ATP2C1 Gene

Sources for ATP2C1 Gene

Back to Top

Content