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Aliases for ATP2B2-IT2 Gene

Subcategory (RNA class) for ATP2B2-IT2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ATP2B2-IT2 Gene

  • ATP2B2 Intronic Transcript 2 2 3 5
  • ATP2B2 Intronic Transcript 2 (Non-Protein Coding) 2

External Ids for ATP2B2-IT2 Gene

Previous GeneCards Identifiers for ATP2B2-IT2 Gene

  • GC00U933010

Summaries for ATP2B2-IT2 Gene

GeneCards Summary for ATP2B2-IT2 Gene

ATP2B2-IT2 (ATP2B2 Intronic Transcript 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP2B2-IT2 Gene

Genomics for ATP2B2-IT2 Gene

Regulatory Elements for ATP2B2-IT2 Gene

Enhancers for ATP2B2-IT2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F009768 0.6 ENCODE 10.4 +857.1 857067 3.1 ATF1 SIN3A ZNF48 ZNF121 GLIS2 SP3 YY2 ZNF610 AEBP2 GLIS1 SRGAP3-AS3 SRGAP3-AS1 ENSG00000230599 ATP2B2-IT1 ATP2B2-IT2 FANCD2OS TTLL3 RPUSD3 CAMK1 OGG1
GH03F009730 0.2 ENCODE 10.4 +894.8 894774 3.0 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SRGAP3-AS3 SRGAP3-AS1 RAD18 EMC3-AS1 ENSG00000269982 CYCSP10 ATP2B2-IT1 GHRLOS FANCD2 TATDN2
GH03F009726 0.9 Ensembl ENCODE 10.4 +899.4 899407 1.6 HDGF ATF1 PKNOX1 SIN3A FEZF1 ZNF2 YY1 GLIS2 ZNF207 YY2 SRGAP3-AS3 SRGAP3-AS1 ATP2B2-IT1 ATP2B2-IT2 FANCD2OS IL17RC BRPF1 GC03M009670
GH03F010024 1 ENCODE 10.4 +600.6 600555 2.7 PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 SRGAP3-AS3 FANCD2OS BRK1 ATP2B2-IT1 ENSG00000230599 RNU6-882P CRELD1 FANCD2 CYCSP10 ATP2B2-IT2
GH03F009984 0.6 Ensembl 10.4 +641.9 641907 0.2 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 SRGAP3-AS3 SRGAP3-AS1 ATP2B2-IT1 ENSG00000230599 RNU6-882P FANCD2 RNU6-670P CYCSP10 PRRT3 RPUSD3
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ATP2B2-IT2 on UCSC Golden Path with GeneCards custom track

Genomic Location for ATP2B2-IT2 Gene

Chromosome:
3
Start:
10,626,015 bp from pter
End:
10,626,807 bp from pter
Size:
793 bases
Orientation:
Minus strand

Genomic View for ATP2B2-IT2 Gene

Genes around ATP2B2-IT2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP2B2-IT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP2B2-IT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP2B2-IT2 Gene

Proteins for ATP2B2-IT2 Gene

Post-translational modifications for ATP2B2-IT2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP2B2-IT2 Gene

Domains & Families for ATP2B2-IT2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP2B2-IT2 Gene

Function for ATP2B2-IT2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP2B2-IT2 Gene

Localization for ATP2B2-IT2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ATP2B2-IT2 Gene

Pathways & Interactions for ATP2B2-IT2 Gene

SuperPathways for ATP2B2-IT2 Gene

No Data Available

Interacting Proteins for ATP2B2-IT2 Gene

Gene Ontology (GO) - Biological Process for ATP2B2-IT2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP2B2-IT2 Gene

Transcripts for ATP2B2-IT2 Gene

mRNA/cDNA for ATP2B2-IT2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP2B2-IT2 Gene

No ASD Table

Relevant External Links for ATP2B2-IT2 Gene

GeneLoc Exon Structure for
ATP2B2-IT2
ECgene alternative splicing isoforms for
ATP2B2-IT2

Expression for ATP2B2-IT2 Gene

mRNA expression in normal human tissues for ATP2B2-IT2 Gene

mRNA differential expression in normal tissues according to GTEx for ATP2B2-IT2 Gene

This gene is overexpressed in Testis (x47.8).
genes like me logo Genes that share expression patterns with ATP2B2-IT2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ATP2B2-IT2 Gene

Orthologs for ATP2B2-IT2 Gene

Evolution for ATP2B2-IT2 Gene

ENSEMBL:
Gene Tree for ATP2B2-IT2 (if available)
TreeFam:
Gene Tree for ATP2B2-IT2 (if available)

No data available for Orthologs for ATP2B2-IT2 Gene

Paralogs for ATP2B2-IT2 Gene

No data available for Paralogs for ATP2B2-IT2 Gene

Variants for ATP2B2-IT2 Gene

Sequence variations from dbSNP and Humsavar for ATP2B2-IT2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs11128520 -- 10,628,075(+) ATTCC(A/G)GGACC intron-variant, upstream-variant-2KB
rs111878533 -- 10,627,052(+) CTCCA(A/T)TTCCC intron-variant, upstream-variant-2KB
rs112543815 -- 10,625,810(+) AGTGC(A/G)CGTAT intron-variant, downstream-variant-500B
rs112765369 -- 10,626,563(+) GAAGG(-/GGATGGAT)GGATG intron-variant
rs113658983 -- 10,625,909(+) GGATT(C/T)AATAG intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for ATP2B2-IT2 Gene

Variant ID Type Subtype PubMed ID
dgv762e201 CNV deletion 23290073
esv4117 OTHER complex 18987735
nsv1073204 CNV deletion 25765185
nsv1121603 CNV deletion 24896259
nsv436362 CNV deletion 17901297
nsv436869 CNV insertion 17901297

Relevant External Links for ATP2B2-IT2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP2B2-IT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP2B2-IT2 Gene

Disorders for ATP2B2-IT2 Gene

Relevant External Links for ATP2B2-IT2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ATP2B2-IT2

No disorders were found for ATP2B2-IT2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP2B2-IT2 Gene

Publications for ATP2B2-IT2 Gene

No publications were found for ATP2B2-IT2 Gene.

Products for ATP2B2-IT2 Gene

Sources for ATP2B2-IT2 Gene

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