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Aliases for ATP2B2-IT1 Gene

Subcategory (RNA class) for ATP2B2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ATP2B2-IT1 Gene

  • ATP2B2 Intronic Transcript 1 2 3 5
  • ATP2B2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ATP2B2-IT1 Gene

Previous GeneCards Identifiers for ATP2B2-IT1 Gene

  • GC00U933542

Summaries for ATP2B2-IT1 Gene

GeneCards Summary for ATP2B2-IT1 Gene

ATP2B2-IT1 (ATP2B2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ATP2B2-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP2B2-IT1 Gene

Genomics for ATP2B2-IT1 Gene

Regulatory Elements for ATP2B2-IT1 Gene

Enhancers for ATP2B2-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H010024 1.2 ENCODE 14.6 +544.1 544123 2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 SLC30A9 CBX5 ZNF207 ZNF143 SRGAP3-AS3 BRK1 ATP2B2-IT1 ENSG00000230599 FANCD2OS CRELD1 CYCSP10 FANCD2 CIDECP MARK2P2
GH03H009730 1.2 ENCODE 14.6 +838.3 838342 3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 SETD5 BRPF1 SRGAP3-AS3 THUMPD3-AS1 CYCSP10 RAD18 SRGAP3-AS1 ENSG00000269982 ENSG00000269886 EMC3-AS1
GH03H009768 1 ENCODE 14.6 +800.6 800635 3 HDGF ATF1 SIN3A ZNF121 GLIS2 ATF7 SP3 YY2 REST ZNF610 SRGAP3-AS3 SRGAP3-AS1 ATP2B2-IT1 ENSG00000230599 BRK1 PRRT3 TTLL3 RPUSD3 CAMK1 OGG1
GH03H010603 0.5 ENCODE 0.3 -33.3 -33256 0 POLR2A ZNF341 NFE2 RUNX3 ATP2B2-IT2 ATP2B2-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ATP2B2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ATP2B2-IT1 Gene

Chromosome:
3
Start:
10,566,255 bp from pter
End:
10,570,375 bp from pter
Size:
4,121 bases
Orientation:
Minus strand

Genomic View for ATP2B2-IT1 Gene

Genes around ATP2B2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP2B2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP2B2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ATP2B2-IT1 Gene

Proteins for ATP2B2-IT1 Gene

Post-translational modifications for ATP2B2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP2B2-IT1 Gene

Domains & Families for ATP2B2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP2B2-IT1 Gene

Function for ATP2B2-IT1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ATP2B2-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP2B2-IT1 Gene

Localization for ATP2B2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP2B2-IT1 Gene

Pathways & Interactions for ATP2B2-IT1 Gene

SuperPathways for ATP2B2-IT1 Gene

No Data Available

Interacting Proteins for ATP2B2-IT1 Gene

Gene Ontology (GO) - Biological Process for ATP2B2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP2B2-IT1 Gene

Drugs & Compounds for ATP2B2-IT1 Gene

No Compound Related Data Available

Transcripts for ATP2B2-IT1 Gene

mRNA/cDNA for ATP2B2-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ATP2B2-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for ATP2B2-IT1 Gene

No ASD Table

Relevant External Links for ATP2B2-IT1 Gene

GeneLoc Exon Structure for
ATP2B2-IT1
ECgene alternative splicing isoforms for
ATP2B2-IT1

Expression for ATP2B2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATP2B2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ATP2B2-IT1 Gene

This gene is overexpressed in Testis (x45.7).
genes like me logo Genes that share expression patterns with ATP2B2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP2B2-IT1 Gene

Orthologs for ATP2B2-IT1 Gene

Evolution for ATP2B2-IT1 Gene

ENSEMBL:
Gene Tree for ATP2B2-IT1 (if available)
TreeFam:
Gene Tree for ATP2B2-IT1 (if available)

No data available for Orthologs for ATP2B2-IT1 Gene

Paralogs for ATP2B2-IT1 Gene

No data available for Paralogs for ATP2B2-IT1 Gene

Variants for ATP2B2-IT1 Gene

Relevant External Links for ATP2B2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP2B2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ATP2B2-IT1 Gene

Disorders for ATP2B2-IT1 Gene

No disorders were found for ATP2B2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ATP2B2-IT1 Gene

Publications for ATP2B2-IT1 Gene

No publications were found for ATP2B2-IT1 Gene.

Products for ATP2B2-IT1 Gene

Sources for ATP2B2-IT1 Gene

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