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Aliases for ATP2B2-IT1 Gene

Subcategory (RNA class) for ATP2B2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ATP2B2-IT1 Gene

  • ATP2B2 Intronic Transcript 1 2 3 5
  • ATP2B2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ATP2B2-IT1 Gene

Previous GeneCards Identifiers for ATP2B2-IT1 Gene

  • GC00U933542

Summaries for ATP2B2-IT1 Gene

GeneCards Summary for ATP2B2-IT1 Gene

ATP2B2-IT1 (ATP2B2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP2B2-IT1 Gene

Genomics for ATP2B2-IT1 Gene

Regulatory Elements for ATP2B2-IT1 Gene

Enhancers for ATP2B2-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F009726 0.9 Ensembl ENCODE 16.2 +843.0 842975 1.6 HDGF ATF1 PKNOX1 SIN3A FEZF1 ZNF2 YY1 GLIS2 ZNF207 YY2 SRGAP3-AS3 SRGAP3-AS1 ATP2B2-IT1 ATP2B2-IT2 FANCD2OS IL17RC BRPF1 GC03M009670
GH03F010024 1 ENCODE 16.2 +544.1 544123 2.7 PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 SRGAP3-AS3 FANCD2OS BRK1 ATP2B2-IT1 ENSG00000230599 RNU6-882P CRELD1 FANCD2 CYCSP10 ATP2B2-IT2
GH03F011433 1 Ensembl ENCODE 16.2 -863.9 -863891 1.6 FEZF1 ZNF335 ZNF121 SCRT2 ZNF362 ZNF488 TSHZ1 ZNF645 ZNF843 GLIS1 ATP2B2-IT1 ENSG00000230599 ATP2B2-IT2 ATG7 GC03M011422 ENSG00000235240
GH03F009984 0.6 Ensembl 16.2 +585.5 585475 0.2 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 SRGAP3-AS3 SRGAP3-AS1 ATP2B2-IT1 ENSG00000230599 RNU6-882P FANCD2 RNU6-670P CYCSP10 PRRT3 RPUSD3
GH03F009768 0.6 ENCODE 16.2 +800.6 800635 3.1 ATF1 SIN3A ZNF48 ZNF121 GLIS2 SP3 YY2 ZNF610 AEBP2 GLIS1 SRGAP3-AS3 SRGAP3-AS1 ENSG00000230599 ATP2B2-IT1 ATP2B2-IT2 FANCD2OS TTLL3 RPUSD3 CAMK1 OGG1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ATP2B2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ATP2B2-IT1 Gene

10,566,255 bp from pter
10,570,375 bp from pter
4,121 bases
Minus strand

Genomic View for ATP2B2-IT1 Gene

Genes around ATP2B2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP2B2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP2B2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ATP2B2-IT1 Gene

Proteins for ATP2B2-IT1 Gene

Post-translational modifications for ATP2B2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP2B2-IT1 Gene

Domains & Families for ATP2B2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP2B2-IT1 Gene

Function for ATP2B2-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP2B2-IT1 Gene

Localization for ATP2B2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ATP2B2-IT1 Gene

Pathways & Interactions for ATP2B2-IT1 Gene

SuperPathways for ATP2B2-IT1 Gene

No Data Available

Interacting Proteins for ATP2B2-IT1 Gene

Gene Ontology (GO) - Biological Process for ATP2B2-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ATP2B2-IT1 Gene

Transcripts for ATP2B2-IT1 Gene

mRNA/cDNA for ATP2B2-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP2B2-IT1 Gene

No ASD Table

Relevant External Links for ATP2B2-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ATP2B2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ATP2B2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ATP2B2-IT1 Gene

This gene is overexpressed in Testis (x45.7).
genes like me logo Genes that share expression patterns with ATP2B2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ATP2B2-IT1 Gene

Orthologs for ATP2B2-IT1 Gene

Evolution for ATP2B2-IT1 Gene

Gene Tree for ATP2B2-IT1 (if available)
Gene Tree for ATP2B2-IT1 (if available)

No data available for Orthologs for ATP2B2-IT1 Gene

Paralogs for ATP2B2-IT1 Gene

No data available for Paralogs for ATP2B2-IT1 Gene

Variants for ATP2B2-IT1 Gene

Relevant External Links for ATP2B2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ATP2B2-IT1 Gene

Disorders for ATP2B2-IT1 Gene

No disorders were found for ATP2B2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ATP2B2-IT1 Gene

Publications for ATP2B2-IT1 Gene

No publications were found for ATP2B2-IT1 Gene.

Products for ATP2B2-IT1 Gene

Sources for ATP2B2-IT1 Gene

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