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Aliases & Descriptions for ATP2B2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 3.6.3.8 3 OTTHUMP00000178534 2 OTTHUMP00000178537 2 PMCA2 1 , 2 , 3 , 5 PMCA2a 2 PMCA2i 2
Descriptions ATPase, Ca++ transporting, plasma membrane 2 2 Plasma membrane calcium ATPase isoform 2 3 Plasma membrane calcium pump isoform 2 3 plasma membrane Ca(2+)-ATPase 2 plasma membrane Ca2+ pump 2 2 plasma membrane calcium ATPase 2 2 plasma membrane calcium pump 2
Search outside databases for aliases for ATP2B2 genePrevious GC identifers: GC03M010298 GC03M010344
Summaries for ATP2B2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ATP2B2 : The protein encoded by this gene belongs to the family of P-type primary ion transport ATPasescharacterized by the formation of an aspartyl phosphate intermediate during the reaction cycle.These enzymes remove bivalent calcium ions from eukaryotic cells against very large concentrationgradients and play a critical role in intracellular calcium homeostasis. The mammalian plasmamembrane calcium ATPase isoforms are encoded by at least four separate genes and the diversity ofthese enzymes is further increased by alternative splicing of transcripts. The expression ofdifferent isoforms and splice variants is regulated in a developmental, tissue- and celltype-specific manner, suggesting that these pumps are functionally adapted to the physiologicalneeds of particular cells and tissues. This gene encodes the plasma membrane calcium ATPaseisoform 2. Alternatively spliced transcript variants encoding different isoforms have beenidentified. [provided by RefSeq] UniProtKB/Swiss-Prot: AT2B2_HUMAN, Q01814 Function : This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with thetransport of calcium out of the cell
Gene Wiki entry for ATP2B2
Genomic Location for ATP2B2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ATP2B2 gene Entrez Gene cytogenetic band: 3p25.3 Ensembl cytogenetic band: 3p25.3 HGNC cytogenetic band: 3p25.3 ATP2B2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03M010342:
(about GC identifiers )
Start:
10,340,707 bp from pter
End:
10,724,716 bp from pter
Size:
384,010 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000003.10 NT_022517.17 Proteins for ATP2B2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: AT2B2_HUMAN, Q01814 (See
protein sequence )Recommended Name: Plasma membrane calcium-transporting ATPase 2 Size : 1243 amino acids; 136876 Da
Subcellular location : Cell membrane; Multi-pass membrane protein
Secondary accessions : O00766 Q12994 Q16818Alternative splicing : 6 isoforms : Q01814-1 Q01814-2 Q01814-3 Q01814-4 Q01814-5 Q01814-6 (There is a combination of two alternative spliced domains at N-terminal site A (W, X and Z) and at C-terminal site C (A and B). So far the splice sites have only been studied independently. Experimental confirmation may be lacking for some isoforms)
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001001331.1 NP_001674.2 ENSEMBL proteins: ENSP00000380267 ENSP00000342954 ENSP00000373311 ENSP00000353414 ENSP00000344677 ENSP00000324172 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ATP2B2: Assays for ATP2B2:
Protein
Domains/ Families for ATP2B2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q01814 ProtoNet protein and cluster: Q01814
3 Blocks protein families : IPB001757 ATPase IPB006068 Cation transporting ATPase IPB008250 E1-E2 ATPase-associated region UniProtKB/Swiss-Prot: AT2B2_HUMAN, Q01814 Similarity : Belongs to the cation transport ATPase (P-type) family. Type IIB subfamily
Gene Function for ATP2B2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001001331 Applied Biosystems Silencer ® siRNAs for ATP2B2 Sigma-Aldrich siRNA and siRNA Panels for ATP2B2 Sigma-Aldrich shRNA Panels and shRNA for ATP2B2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001001331                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001001331                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001001331  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001001331 UniProtKB/Swiss-Prot: AT2B2_HUMAN, Q01814 Function : This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with thetransport of calcium out of the cell Catalytic activity : ATP + H(2)O + Ca(2+)(Cis) = ADP + phosphate + Ca(2+)(Trans)Enzyme Number (IUBMB): EC 3.6.3.8
Genatlas biochemistry entry for ATP2B2 :ATPase,Ca++ transporting,B2 plasma membrane,mediating the extrusion of CA2+ from the cell
7 MGI mutant phenotypes (inferred from 7 alleles ) (MGI details for Atp2b2) :5/8 Gene Ontology (GO) molecular function terms (links to tree view) (see all 8
):
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Pathways & Interactions for ATP2B2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for ATP2B2 (Your Favorite Gene powered by Ingenuity) 5/28 Interacting proteins for ATP2B2 (ENSP00000353414 3 Q01814 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 28
)About this table 5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
):
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Drugs & Compounds for ATP2B2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for ATP2B2
Browse Tocris compounds for ATP2B2 1 Novoseek chemical compound relationship for ATP2B2 gene
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Transcripts for ATP2B2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001001331 Sigma-Aldrich siRNA and siRNA Panels for ATP2B2 Sigma-Aldrich shRNA Panels and shRNA for ATP2B2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001001331 NM_001683
REFSEQ mRNAs for ATP2B2 gene (2 alternative transcripts): NM_001001331.2 NM_001683.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001001331 NM_001683
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001001331                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001001331                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001001331  
Additional cDNA sequence: AB210008.1 AK308898.1 BC019853.1 BC128575.1 DQ201777.1 DQ201778.1 L00620.1 L20977.1 M97260.1 S95738.1 S95743.1 S95758.1 U15688.1 X63575.1
10 DOTS entries : DT.442590 DT.100746837 DT.101979735 DT.100746836 DT.120861250 DT.40125280 DT.91649950 DT.91725839 DT.92416395 DT.97835031
24/107 AceView cDNA sequences (see all 107
):T28048 Z98483 AA363898 AI459315 NM_001683 F07516 NM_001001331 BQ718882 CB156994 BF108567 BX489007 T07949 AA197323 M97260 AL134596 BE701553 BM466549 L00620 AA984150 CK004891 T30695 BM715245 AA324771 AL134595
highest scoring ESTs for ATP2B2 :L20977 X63575 L00620 M97260 AA197252 AA197323 AA324771 AA325402 AA340322 AA363898
Unigene Cluster for ATP2B2: ATPase, Ca++ transporting, plasma membrane 2 Hs.268942 [show with all ESTs ] Unigene Representative Sequence: NM_001001331 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for ATP2B2 (see all 8
) ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ SP1 :                                                     SP2 :                                                     SP3 :           -   -   -                                       SP4 :                                                     SP5 :                                                    
ExUns: 23 ^ 24 ^ 25a · 25b SP1 :         SP2 :         SP3 :         SP4 : -   -       SP5 :        
About this scheme ECgene alternative splicing isoforms for ATP2B2 6 Ensembl transcripts including schematic representations : ENST00000397077
ENST00000342354
ENST00000383800
ENST00000360273
ENST00000343816
ENST00000352432
Expression for ATP2B2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ATP2B2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ATP2B2 1 / 2 / 3
14 probe-sets matching ATP2B2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GGGTACGTTTSOURCE GeneReport for Unigene cluster: Hs.268942 Expression variation in blood from EXPOLDB for ATP2B2
UniProtKB/Swiss-Prot: AT2B2_HUMAN, Q01814 Tissue specificity : Mainly expressed in brain cortex. Found in low levels in skeletal muscle, heartmuscle, stomach, liver, kidney and lung. Isoforms containing segment B are found in brain cortexand at low levels in other tissues. Isoforms containing segments X and W are found at low levelsin all tissues. Isoforms containing segment A and segment Z are found at low levels in skeletalmuscle and heart muscle
Orthologs for ATP2B2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ATP2B2 gene from 5/19 species (see all 19
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
ATP2B41
--
ATPase, Ca++ transporting, plasma membrane 4
92.27(n) 97.41(a)
476535 XM_855984.1 XP_861077.1
chimpanzee (Pan troglodytes)
ATP2B21
--
ATPase, Ca++ transporting, plasma membrane 2
96.76(n) 96.28(a)
460168 XM_001151685.1 XP_001151685.1
cow (Bos taurus)
ATP2B21
--
similar to plasma membrane calcium ATPase 2
93.67(n) 98.79(a)
613800 XM_864933.2 XP_870026.2
rat (Rattus norvegicus)
Atp2b21
--
ATPase, Ca++ transporting, plasma membrane 2
91.1(n) 98.75(a)
24215 NM_012508.3 NP_036640.1
mouse (Mus musculus)
Atp2b21 , 5
6 (49.50 cM) 5
ATPase, Ca++ transporting, plasma membrane 21, 5
91.76(n) 1 98.83(a) 1
11941 1 NM_009723.2 1 NP_033853.1 1 AB030737 5 AB030738 5 (see all 17 )
About this table Species with no ortholog for ATP2B2 ENSEMBL Gene Tree for ATP2B2 Paralogs for ATP2B2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ATP2B2 gene ATP2B1 2 ATP2B3 2 ATP2B4 2
SNPs/Variants for ATP2B2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ATP2B2 (up to first 250kb)
Disorders & Mutations for ATP2B2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 108733 disorders : 601386 Human Gene Mutation Database : ATP2B2
Medical News for ATP2B2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ATP2B2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/42 PubMed articles for ATP2B2 gene (see all 42
): Microdiversity of human-plasma-membrane calcium-pump isoform 2 generated by alternative RNA splicing in the N-terminal coding region. (PubMed id 1313367) 2, 3, 4 Heim R.... Carafoli E. (1992) Determination of the nucleotide sequence and chromosomal localization of the ATP2B2 gene encoding human Ca(2+)-pumping ATPase isoform PMCA2. (PubMed id 1427863) 1, 3, 4 Brandt P.... Neve R.L. (1992) Quantitative analysis of alternative splicing options of human plasma membrane calcium pump genes. (PubMed id 7989379) 3, 4 Stauffer T.P....Strehler E.E. (1994) Quantitative analysis of alternative splicing options of human plasma membrane calcium pump genes. (PubMed id 8245032) 3, 4 Stauffer T.P.... Strehler E.E. (1993) von Hippel-Lindau syndrome: cloning and identification of the plasma membrane Ca(++)-transporting ATPase isoform 2 gene that resides in the von Hippel-Lindau gene region. (PubMed id 8428366) 3, 4 Latif F.... Lerman M.I. (1993) Alternative splicing of the first intracellular loop of plasma membrane Ca2+-ATPase isoform 2 alters its membrane targeting. (PubMed id 12624087) 1, 3 Chicka M.C. and Strehler E.E. (2003) Mutations in a plasma membrane Ca2+-ATPase gene cause deafness in deafwaddler mice. (PubMed id 9697703) 1, 3 Street V.A....Noben-Trauth K. (1998) Plasma membrane calcium-ATPase 2 and 4 in human breast cancer cell lines. (PubMed id 16216224) 1, 3 Lee W.J....Monteith G.R. (2005) Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum. (PubMed id 19043545) 3 Gieger C....Suhre K. (2008) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 4 Dephoure N.... Gygi S.P. (2008)
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Genome Databases showing ATP2B2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ATP2B2
(According to HUGE )
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--
Specialized Databases showing ATP2B2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ATP2B2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ATP2B2:
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009