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Aliases for ATP2B1-AS1 Gene

Subcategory (RNA class) for ATP2B1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3.2

Aliases for ATP2B1-AS1 Gene

  • ATP2B1 Antisense RNA 1 2 3 5
  • Long Intergenic Non-Protein Coding RNA 936 2 3
  • LINC00936 3

External Ids for ATP2B1-AS1 Gene

ORGUL Members for ATP2B1-AS1 Gene

Previous HGNC Symbols for ATP2B1-AS1 Gene

  • LINC00936

Summaries for ATP2B1-AS1 Gene

GeneCards Summary for ATP2B1-AS1 Gene

ATP2B1-AS1 (ATP2B1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for ATP2B1-AS1 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for ATP2B1-AS1

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ATP2B1-AS1 Gene

Genomics for ATP2B1-AS1 Gene

Regulatory Elements for ATP2B1-AS1 Gene

Enhancers for ATP2B1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G089192 1.1 FANTOM5 ENCODE 11.6 -516.3 -516326 0.4 ESRRA FOXA2 JUN RAD21 CTBP1 GATA3 FOSL2 FOS GATAD2A TEAD1 DUSP6 ATP2B1-AS1 ATP2B1 LOC105378255 LOC100287355
GH12G089942 1.9 FANTOM5 Ensembl ENCODE dbSUPER 4.7 +238.5 238537 9.6 PKNOX1 ZFP64 SIN3A FEZF1 ZNF2 FOS DEK ZHX2 REST TBX21 ATP2B1 POC1B ATP2B1-AS1 LINC02399 BRWD1P2
GH12G089768 1.7 FANTOM5 Ensembl ENCODE 4.8 +60.9 60923 3.1 PKNOX1 SIN3A FEZF1 ZNF2 ZBTB7B ZNF416 FOS DEK SP3 ZHX2 DUSP6 ATP2B1 ATP2B1-AS1 POC1B RNU6-148P ENSG00000258216
GH12G089932 0.7 dbSUPER 4.7 +226.7 226656 6.1 PKNOX1 FEZF1 EBF1 GATA3 GATA2 POLR2A EED ZSCAN5C FOS IKZF2 ATP2B1-AS1 LINC02399 BRWD1P2
GH12G090152 0.4 ENCODE 5.2 +444.4 444449 1.1 ZIC2 PRDM1 ATP2B1-AS1 GC12M090143 LOC105369892
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ATP2B1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ATP2B1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000055107 45 4401 HDGF PKNOX1 CREB3L1 AGO1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF766

Genomic Location for ATP2B1-AS1 Gene

Chromosome:
12
Start:
89,708,955 bp from pter
End:
89,712,590 bp from pter
Size:
3,636 bases
Orientation:
Plus strand

Genomic View for ATP2B1-AS1 Gene

Genes around ATP2B1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP2B1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP2B1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP2B1-AS1 Gene

ORGUL Member Location for ATP2B1-AS1 Gene

ORGUL Member Location for ATP2B1-AS1 gene

Proteins for ATP2B1-AS1 Gene

Post-translational modifications for ATP2B1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP2B1-AS1 Gene

Domains & Families for ATP2B1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP2B1-AS1 Gene

Function for ATP2B1-AS1 Gene

Phenotypes for ATP2B1-AS1 Gene

GenomeRNAi human phenotypes for ATP2B1-AS1:
genes like me logo Genes that share phenotypes with ATP2B1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP2B1-AS1 Gene

Localization for ATP2B1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ATP2B1-AS1 Gene

Pathways & Interactions for ATP2B1-AS1 Gene

SuperPathways for ATP2B1-AS1 Gene

No Data Available

Interacting Proteins for ATP2B1-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP2B1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP2B1-AS1 Gene

Drugs & Compounds for ATP2B1-AS1 Gene

No Compound Related Data Available

Transcripts for ATP2B1-AS1 Gene

fRNAdb Secondary structures for ATP2B1-AS1 Gene

  • FR075977

mRNA/cDNA for ATP2B1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP2B1-AS1 Gene

No ASD Table

Relevant External Links for ATP2B1-AS1 Gene

GeneLoc Exon Structure for
ATP2B1-AS1
ECgene alternative splicing isoforms for
ATP2B1-AS1

Expression for ATP2B1-AS1 Gene

NURSA nuclear receptor signaling pathways regulating expression of ATP2B1-AS1 Gene:

ATP2B1-AS1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP2B1-AS1 Gene

Orthologs for ATP2B1-AS1 Gene

Evolution for ATP2B1-AS1 Gene

ENSEMBL:
Gene Tree for ATP2B1-AS1 (if available)
TreeFam:
Gene Tree for ATP2B1-AS1 (if available)

No data available for Orthologs for ATP2B1-AS1 Gene

Paralogs for ATP2B1-AS1 Gene

No data available for Paralogs for ATP2B1-AS1 Gene

Variants for ATP2B1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP2B1-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000051988 -- 89,708,955(+) GCTCC(C/G)CAGAG intron-variant, nc-transcript-variant
rs1000298461 -- 89,710,381(+) ATCTT(C/T)CCTGA nc-transcript-variant, upstream-variant-2KB
rs1000741149 -- 89,708,999(+) GGGCA(A/G)CTCAG intron-variant, nc-transcript-variant
rs1000772347 -- 89,709,172(+) ACCGG(C/G)TGGCC intron-variant, nc-transcript-variant
rs1001177522 -- 89,710,753(+) CTCCT(C/G)AAAAG nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ATP2B1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2773n54 CNV gain 21841781
dgv2774n54 CNV gain+loss 21841781
dgv2775n54 CNV loss 21841781
dgv2776n54 CNV gain+loss 21841781
esv28180 CNV loss 19812545
nsv559705 CNV gain 21841781
nsv559709 CNV gain 21841781
nsv559711 CNV gain 21841781
nsv559719 CNV loss 21841781
nsv559720 CNV loss 21841781

Relevant External Links for ATP2B1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP2B1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP2B1-AS1 Gene

Disorders for ATP2B1-AS1 Gene

Relevant External Links for ATP2B1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ATP2B1-AS1

No disorders were found for ATP2B1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP2B1-AS1 Gene

Publications for ATP2B1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for ATP2B1-AS1 Gene

Sources for ATP2B1-AS1 Gene

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