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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ATP1A1OS Gene

RNA gene   GIFtS: 27
GCID: GC01M116942

ATP1A1 Opposite Strand

(Previous name: chromosome 1 open reading frame 203)
(Previous symbol: C1orf203)
  Search for ATP1A1OS
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 3

Aliases
ATP1A1 Opposite Strand1 2
C1orf2031 2 3
Chromosome 1 Open Reading Frame 2031
ATP1A1 Opposite Strand Protein3

External Ids:    HGNC: 282621   Entrez Gene: 848522   Ensembl: ENSG000002038657   UniProtKB: Q5TC043   
ORGUL members:         
NONCODE14:n406604 n406606 n406605 n407943 n407944      

Export aliases for ATP1A1OS gene to outside databases

Previous GC identifer: GC01M114793


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ATP1A1OS Gene: 
ATP1A1OS (ATP1A1 opposite strand) is an RNA gene, and is affiliated with the lncRNA class.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.2  NT_032977.9  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for ATP1A1OS
         Other transcription factors

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Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ATP1A1OS


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p13.1   Ensembl cytogenetic band:  1p13.1   HGNC cytogenetic band: 1p13.1

ATP1A1OS Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ATP1A1OS gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M116942:  view genomic region     (about GC identifiers)

Start:
116,935,487 bp from pter      End:
116,961,244 bp from pter
Size:
25,758 bases      Orientation:
minus strand
ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for ATP1A1OS

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ATPOS_HUMAN, Q5TC04 (See protein sequence)
Recommended Name: Putative uncharacterized protein ATP1A1OS  
Size: 95 amino acids; 10240 Da
Caution: Product of a dubious gene prediction

Explore the universe of human proteins at neXtProt for ATP1A1OS: NX_Q5TC04

ATP1A1OS Protein expression data from MOPED1, PaxDb2 and MAXQB3 : --

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ProtoNet protein and cluster: Q5TC04


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Animal Models:
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ATP1A1OS

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for ATP1A1OS (ATPOS)

Search CenterWatch for drugs/clinical trials and news about ATP1A1OS

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for ATP1A1OS gene: 
NM_032766.1  

Unigene Cluster for ATP1A1OS:

ATP1A1 opposite strand
Hs.664752  [show with all ESTs]
Unigene Representative Sequence: BC098428
3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000493908(uc009whb.2 uc001egg.3) ENST00000369491(uc001egi.3)
ENST00000369492(uc001egj.3 uc001egk.3)
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Additional mRNA sequence: 

AK309389.1 AK309872.1 BC007373.2 BC018892.2 BC028281.1 BC069003.1 BC098428.1 NR_024124.2 
NR_024125.2 NR_024126.1 NR_027645.1 NR_027646.1 

11 DOTS entries:

DT.95243525  DT.92345482  DT.121352386  DT.99942390  DT.91875303  DT.70103952  DT.121352433  DT.87009666 
DT.121352428  DT.86999948  DT.95293386 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for ATP1A1OS:none

ATP1A1OS expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
ATP1A1OS Expression
About this image


Genevestigator expression for ATP1A1OS

SOURCE GeneReport for Unigene cluster: Hs.664752
    SABiosciences Custom PCR Arrays for ATP1A1OS
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In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
  --

ENSEMBL Gene Tree for ATP1A1OS (if available)
TreeFam Gene Tree for ATP1A1OS (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/290 SNPs in ATP1A1OS are shown (see all 290)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 1 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs120907051,2
C--116948021(+) TTATGT/CGCCAG 5 -- int1 nc-transcript-variantese32Minor allele frequency- C:0.11CSA WA 120
rs1437298841,2
--116948257(+) GATCTC/GCCAGA 5 -- nc-transcript-variantint10--------
rs1480847601,2
C--116948285(+) TTCTCC/TGAAAA 5 -- nc-transcript-variantint10--------
rs1908677241,2
--116948324(+) TGTGCA/GCTTCC 5 -- nc-transcript-variantint10--------
rs1830151641,2
--116948500(+) ATCTTC/TAAAAT 5 -- nc-transcript-variantint10--------
rs1144081571,2
C,F--116948551(+) AAGATC/GATGGG 5 -- nc-transcript-variantint11Minor allele frequency- G:0.02NA 120
rs1868917681,2
--116948629(+) CGGCAC/GGGCCA 5 -- nc-transcript-variantint10--------
rs8506101,2
C,F,O,A,H--116948712(+) CTTTCA/C/G/
        
GCATC
11 -- nc-transcript-variantint1 ese328EA NA MN NS WA 2882
rs741118781,2
C,F--116948754(+) CGATGA/TAGGTC 5 -- nc-transcript-variantint12Minor allele frequency- T:0.04WA 120
rs120920351,2
F--116948767(+) GGGCAT/CTTCCT 5 -- nc-transcript-variantint11Minor allele frequency- C:0.02WA 118

HapMap Linkage Disequilibrium report for ATP1A1OS (116935487 - 116961244 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for ATP1A1OS:    About this table     
Variant IDTypeSubtypePubMed ID
nsv2533CNV Insertion18451855

SABiosciences Cancer Mutation PCR Assays
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

ATP1A1OS for disorders           About MalaCards

ATP1A1OS for disorders           About GeneDecksing

Genetic Association Database (GAD): ATP1A1OS

Export disorders for ATP1A1OS gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for ATP1A1OS gene integrated from 9 sources:
(articles sorted by number of sources associating them with ATP1A1OS)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
  2. Modeling the cumulative genetic risk for multiple scl erosis from genome-wide association data. (PubMed id 21244703)4 Wang J.H....Oksenberg J.R. (2011)
  3. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PubMed id 17903296)4 Kiel D.P....Karasik D. (2007)
  4. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)2 Gregory S.G.... Bentley D.R. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 84852 HGNC: 28262 Ensembl:ENSG00000203865 euGenes: HUgn84852 ECgene: ATP1A1OS
H-InvDB: ATP1A1OS

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for ATP1A1OS Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for ATP1A1OS gene:
Search GeneIP for patents involving ATP1A1OS

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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