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Aliases for ATP1A1-AS1 Gene

Subcategory (RNA class) for ATP1A1-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for ATP1A1-AS1 Gene

  • ATP1A1 Antisense RNA 1 4 2 3
  • ATP1A1 Opposite Strand 2 3
  • ATP1A1OS 3 4
  • C1orf203 3 4
  • Chromosome 1 Open Reading Frame 203 2
  • ATP1A1 Antisense Gene Protein 1 4
  • ATP1A1 Opposite Strand Protein 4

External Ids for ATP1A1-AS1 Gene

ORGUL Members for ATP1A1-AS1 Gene

Previous HGNC Symbols for ATP1A1-AS1 Gene

  • C1orf203
  • ATP1A1OS

Previous GeneCards Identifiers for ATP1A1-AS1 Gene

  • GC01M116934

Summaries for ATP1A1-AS1 Gene

GeneCards Summary for ATP1A1-AS1 Gene

ATP1A1-AS1 (ATP1A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP1A1-AS1 Gene

Genomics for ATP1A1-AS1 Gene

Genomic Location for ATP1A1-AS1 Gene

Start:
116,392,247 bp from pter
End:
116,418,622 bp from pter
Size:
26,376 bases
Orientation:
Minus strand

Genomic View for ATP1A1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ATP1A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP1A1-AS1 Gene

No data available for Regulatory Elements for ATP1A1-AS1 Gene

Proteins for ATP1A1-AS1 Gene

  • Protein details for ATP1A1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TC04-ATAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein ATP1A1-AS1
    Protein Accession:
    Q5TC04
    Secondary Accessions:

    Protein attributes for ATP1A1-AS1 Gene

    Size:
    95 amino acids
    Molecular mass:
    10240 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ATP1A1-AS1 Gene

Proteomics data for ATP1A1-AS1 Gene at MOPED

Post-translational modifications for ATP1A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP1A1-AS1 Gene

Domains for ATP1A1-AS1 Gene

Gene Families for ATP1A1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for ATP1A1-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ATP1A1-AS1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP1A1-AS1 Gene

Function for ATP1A1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ATP1A1-AS1 Gene

Localization for ATP1A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ATP1A1-AS1 Gene

Pathways for ATP1A1-AS1 Gene

SuperPathways for ATP1A1-AS1 Gene

No Data Available

Interacting Proteins for ATP1A1-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP1A1-AS1 Gene

None

No data available for Pathways by source for ATP1A1-AS1 Gene

Transcripts for ATP1A1-AS1 Gene

mRNA/cDNA for ATP1A1-AS1 Gene

(1) REFSEQ mRNAs :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ATP1A1-AS1
    • Block miRNA regulation of ATP1A1-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for ATP1A1-AS1

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ATP1A1-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for ATP1A1-AS1 Gene

    No ASD Table

    Relevant External Links for ATP1A1-AS1 Gene

    GeneLoc Exon Structure for
    ATP1A1-AS1
    ECgene alternative splicing isoforms for
    ATP1A1-AS1

    Expression for ATP1A1-AS1 Gene

    mRNA expression in normal human tissues for ATP1A1-AS1 Gene

    Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ATP1A1-AS1 Gene

    genes like me logo Genes that share expressions with ATP1A1-AS1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ATP1A1-AS1 Gene

    Orthologs for ATP1A1-AS1 Gene

    Evolution for ATP1A1-AS1 Gene

    ENSEMBL:
    Gene Tree for ATP1A1-AS1 (if available)
    TreeFam:
    Gene Tree for ATP1A1-AS1 (if available)

    No data available for Orthologs for ATP1A1-AS1 Gene

    Paralogs for ATP1A1-AS1 Gene

    No data available for Paralogs for ATP1A1-AS1 Gene

    Variants for ATP1A1-AS1 Gene

    Sequence variations from dbSNP and Humsavar for ATP1A1-AS1 Gene

    SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
    rs850610 -- 116,406,090(+) CTTTC(A/C/G/T)GCATC nc-transcript-variant, intron-variant
    rs850611 -- 116,419,510(+) aactt(C/T)tgacc upstream-variant-2KB
    rs879651 -- 116,414,982(+) TATCC(A/G)CCTTT intron-variant
    rs886686 -- 116,416,028(+) GTTGG(A/G)GGGGG intron-variant
    rs1885801 -- 116,406,332(+) TCTGC(C/T)CTTTT intron-variant

    Relevant External Links for ATP1A1-AS1 Gene

    HapMap Linkage Disequilibrium report
    ATP1A1-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ATP1A1-AS1 Gene

    Disorders for ATP1A1-AS1 Gene

    No disorders were found for ATP1A1-AS1 Gene.

    No data available for UniProtKB/Swiss-Prot for ATP1A1-AS1 Gene

    Publications for ATP1A1-AS1 Gene

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
    3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4

    Products for ATP1A1-AS1 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate ATP1A1-AS1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for ATP1A1-AS1
      • Block miRNA regulation of ATP1A1-AS1 using miScript Target Protectors

      Sources for ATP1A1-AS1 Gene

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