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Aliases for ATP13A5-AS1 Gene

Subcategory (RNA class) for ATP13A5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ATP13A5-AS1 Gene

  • ATP13A5 Antisense RNA 1 2 3 5
  • ATP13A5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ATP13A5-AS1 Gene

Previous GeneCards Identifiers for ATP13A5-AS1 Gene

  • GC00U933089
  • GC03P193026

Summaries for ATP13A5-AS1 Gene

GeneCards Summary for ATP13A5-AS1 Gene

ATP13A5-AS1 (ATP13A5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ATP13A5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP13A5-AS1 Gene

Genomics for ATP13A5-AS1 Gene

GeneHancer (GH) Regulatory Elements for ATP13A5-AS1 Gene

Promoters and enhancers for ATP13A5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I193240 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 6.3 -66.0 -65968 2.1 ZSCAN4 INSM2 ZNF76 GLI4 ZNF335 EGR1 SCRT2 ZNF391 EGR2 ZNF280D HRASLS MGC2889 LOC105374280 VEZF1P1 ATP13A5-AS1
GH03I193347 Enhancer 0.5 ENCODE 10.8 +41.2 41222 1.3 MXI1 RFX1 POLR2A BATF RUNX3 GC03M193345 ATP13A5 ATP13A5-AS1 HRASLS
GH03I193301 Enhancer 0.5 ENCODE 0.4 -5.6 -5597 0.2 JUND JUN ZNF629 FOS ATP13A5-AS1 MGC2889 ATP13A5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ATP13A5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATP13A5-AS1 Gene

Genomic Locations for ATP13A5-AS1 Gene
chr3:193,307,244-193,314,521
(GRCh38/hg38)
Size:
7,278 bases
Orientation:
Plus strand
chr3:193,025,033-193,032,151
(GRCh37/hg19)

Genomic View for ATP13A5-AS1 Gene

Genes around ATP13A5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP13A5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP13A5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP13A5-AS1 Gene

Proteins for ATP13A5-AS1 Gene

Post-translational modifications for ATP13A5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP13A5-AS1 Gene

Domains & Families for ATP13A5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP13A5-AS1 Gene

Function for ATP13A5-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP13A5-AS1 Gene

Localization for ATP13A5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP13A5-AS1 Gene

Pathways & Interactions for ATP13A5-AS1 Gene

SuperPathways for ATP13A5-AS1 Gene

No Data Available

Interacting Proteins for ATP13A5-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP13A5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP13A5-AS1 Gene

Drugs & Compounds for ATP13A5-AS1 Gene

No Compound Related Data Available

Transcripts for ATP13A5-AS1 Gene

mRNA/cDNA for ATP13A5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ATP13A5-AS1 Gene

No ASD Table

Relevant External Links for ATP13A5-AS1 Gene

GeneLoc Exon Structure for
ATP13A5-AS1
ECgene alternative splicing isoforms for
ATP13A5-AS1

Expression for ATP13A5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATP13A5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ATP13A5-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x9.7).
genes like me logo Genes that share expression patterns with ATP13A5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP13A5-AS1 Gene

Orthologs for ATP13A5-AS1 Gene

Evolution for ATP13A5-AS1 Gene

ENSEMBL:
Gene Tree for ATP13A5-AS1 (if available)
TreeFam:
Gene Tree for ATP13A5-AS1 (if available)

No data available for Orthologs for ATP13A5-AS1 Gene

Paralogs for ATP13A5-AS1 Gene

No data available for Paralogs for ATP13A5-AS1 Gene

Variants for ATP13A5-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP13A5-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000296557 -- 193,309,626(+) G/T intron_variant
rs1000643896 -- 193,305,257(+) C/T upstream_transcript_variant
rs1001787490 -- 193,310,389(+) T/C intron_variant
rs1001990798 -- 193,312,622(+) A/G intron_variant
rs1002277737 -- 193,312,965(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ATP13A5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1003505 CNV gain 25217958

Additional Variant Information for ATP13A5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP13A5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP13A5-AS1 Gene

Disorders for ATP13A5-AS1 Gene

Additional Disease Information for ATP13A5-AS1

No disorders were found for ATP13A5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP13A5-AS1 Gene

Publications for ATP13A5-AS1 Gene

No publications were found for ATP13A5-AS1 Gene.

Products for ATP13A5-AS1 Gene

Sources for ATP13A5-AS1 Gene

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