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Aliases for ATP13A4-AS1 Gene

Subcategory (RNA class) for ATP13A4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ATP13A4-AS1 Gene

  • ATP13A4 Antisense RNA 1 2 3 5
  • ATP13A4 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ATP13A4-AS1 Gene

Previous GeneCards Identifiers for ATP13A4-AS1 Gene

  • GC00U932985
  • GC03P193272

Summaries for ATP13A4-AS1 Gene

GeneCards Summary for ATP13A4-AS1 Gene

ATP13A4-AS1 (ATP13A4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ATP13A4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP13A4-AS1 Gene

Genomics for ATP13A4-AS1 Gene

Regulatory Elements for ATP13A4-AS1 Gene

Enhancers for ATP13A4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H193489 0.6 FANTOM5 ENCODE 15.3 -62.4 -62438 3.5 ATP13A4 ATP13A4-AS1 ATP13A5
GH03H193465 0.4 ENCODE 6.8 -87.5 -87470 1.3 CREB1 ATF2 ATP13A4-AS1 ATP13A5
GH03H193556 0.4 ENCODE 6.1 +3.8 3814 0.1 FOXA2 ATP13A4-AS1 EEF1A1P23
GH03H193554 0.2 ENCODE 7 +1.7 1715 1.3 OPA1 ATP13A4-AS1 EEF1A1P23
GH03H193481 0.2 ENCODE 5.4 -71.6 -71567 0.2 ATP13A4-AS1 ATP13A5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ATP13A4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATP13A4-AS1 Gene

Genomic Locations for ATP13A4-AS1 Gene
2,372 bases
Plus strand

Genomic View for ATP13A4-AS1 Gene

Genes around ATP13A4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP13A4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP13A4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP13A4-AS1 Gene

Proteins for ATP13A4-AS1 Gene

Post-translational modifications for ATP13A4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP13A4-AS1 Gene

Domains & Families for ATP13A4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP13A4-AS1 Gene

Function for ATP13A4-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP13A4-AS1 Gene

Localization for ATP13A4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP13A4-AS1 Gene

Pathways & Interactions for ATP13A4-AS1 Gene

SuperPathways for ATP13A4-AS1 Gene

No Data Available

Interacting Proteins for ATP13A4-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP13A4-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ATP13A4-AS1 Gene

Drugs & Compounds for ATP13A4-AS1 Gene

No Compound Related Data Available

Transcripts for ATP13A4-AS1 Gene

mRNA/cDNA for ATP13A4-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ATP13A4-AS1 Gene

No ASD Table

Relevant External Links for ATP13A4-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ATP13A4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATP13A4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ATP13A4-AS1 Gene

This gene is overexpressed in Lung (x14.2) and Thyroid (x4.6).
genes like me logo Genes that share expression patterns with ATP13A4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP13A4-AS1 Gene

Orthologs for ATP13A4-AS1 Gene

Evolution for ATP13A4-AS1 Gene

Gene Tree for ATP13A4-AS1 (if available)
Gene Tree for ATP13A4-AS1 (if available)

No data available for Orthologs for ATP13A4-AS1 Gene

Paralogs for ATP13A4-AS1 Gene

No data available for Paralogs for ATP13A4-AS1 Gene

Variants for ATP13A4-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP13A4-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000654528 -- 193,555,774(+) AAAAC(A/T)GTCAG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1000725798 -- 193,554,506(+) ATTCT(G/T)GACAA intron-variant, nc-transcript-variant
rs1001108822 -- 193,554,760(+) TCCTT(C/T)ATTGA intron-variant, nc-transcript-variant, reference, missense
rs1002223231 -- 193,555,633(+) ATAAA(C/G)AGTGC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1002820951 -- 193,553,109(+) ACTAC(C/T)GGCCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ATP13A4-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1003505 CNV gain 25217958
esv2759212 CNV gain 17122850

Relevant External Links for ATP13A4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP13A4-AS1 Gene

Disorders for ATP13A4-AS1 Gene

Relevant External Links for ATP13A4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for ATP13A4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP13A4-AS1 Gene

Publications for ATP13A4-AS1 Gene

No publications were found for ATP13A4-AS1 Gene.

Products for ATP13A4-AS1 Gene

Sources for ATP13A4-AS1 Gene

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