Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ATP13A2 Gene

protein-coding   GIFtS: 54
GCID: GC01M017312

ATPase type 13A2

(Previous name: Parkinson disease (autosomal recessive) 9 (Kufor-Rakeb...)
(Previous symbol: PARK9)
 Explore 13 diseases affiliated with
ATP13A2 via our new
 Human Malady Compendium 
Biological research products
for ATP13A2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
ATPase Type 13A21 2     Probable Cation-Transporting ATPase 13A22
PARK91 2 3 5     Putative ATPase2
CLN121 2     EC 3.6.3.-3
HSA99471 2     EC 3.6.38
KRPPD2 5     EC 3.6.3.58
Parkinson Disease (Autosomal Recessive) 9 (Kufor-Rakeb Syndrome)1     EC 3.6.3.88

External Ids:    HGNC: 302131   Entrez Gene: 234002   Ensembl: ENSG000001593637   OMIM: 6105135   UniProtKB: Q9NQ113   

Export aliases for ATP13A2 gene to outside databases

Previous GC identifers: GC01M017058 GC01M017185 GC01M015556


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ATP13A2:
This gene encodes a member of the P5 subfamily of ATPases which transports inorganic cations as well as other
substrates. Mutations in this gene are associated with Kufor-Rakeb syndrome (KRS), also referred to as Parkinson
disease 9. Multiple transcript variants encoding different isoforms have been found for this gene.(provided by RefSeq,
Nov 2008)

UniProtKB/Swiss-Prot: AT132_HUMAN, Q9NQ11
Function: May play a role in intracellular cation homeostasis and the maintenance of neuronal integrity

Gene Wiki entry for ATP13A2


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_004610.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ATP13A2 gene promoter:
         p53   AML1a   Pax-5   LUN-1   GATA-1   Max   Pax-3   Ik-2   c-Myc   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidATP13A2 promoter sequence
   Search SABiosciences Chromatin IP Primers for ATP13A2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ATP13A2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p36   Ensembl cytogenetic band:  1p36.13   HGNC cytogenetic band: 1p36

ATP13A2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ATP13A2 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M017312:  view genomic region     (about GC identifiers)

Start:
17,312,453 bp from pter      End:
17,338,423 bp from pter
Size:
25,971 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: AT132_HUMAN, Q9NQ11 (See protein sequence)
Recommended Name: Probable cation-transporting ATPase 13A2  
Size: 1180 amino acids; 128794 Da
Subcellular location: Membrane; Multi-pass membrane protein (By similarity). Lysosome
Secondary accessions: O75700 Q5JXY2 Q6S9Z9
Alternative splicing: 3 isoforms:  Q9NQ11-1   Q9NQ11-2   Q9NQ11-3   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ATP13A2: NX_Q9NQ11

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9NQ11

  • 4/10 DME Specific Peptides for ATP13A2 (Q9NQ11) (see all 10)
     TGESIPV  DKTGTLT  VPPALPA  SSLTGES 

    ATP13A2 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (3 alternative transcripts): 
    NP_001135445.1  NP_001135446.1  NP_071372.1  

    ENSEMBL proteins: 
     ENSP00000327214   ENSP00000341115   ENSP00000413307   ENSP00000423065   ENSP00000421126  
     ENSP00000424393   ENSP00000424313   ENSP00000427241   ENSP00000422227   ENSP00000422668  

    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    Browse OriGene Protein Over-expression Lysates
    OriGene Custom Protein Services for ATP13A2 
    GenScript Custom Purified and Recombinant Proteins Services for ATP13A2
    Novus Biologicals ATP13A2 Proteins
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for ATP13A2

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005764lysosome IDA--
    GO:0016020membrane ----
    GO:0016021integral to membrane IEA--


    ATP13A2 for ontologies           About GeneDecksing



    ATP13A2 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Cell Signaling Technology (CST) Antibodies for ATP13A2 
    OriGene Antibodies: ATP13A2
    OriGene Custom Antibody Services for ATP13A2 
    GenScript Custom Superior Antibodies Services for ATP13A2
    Novus Biologicals ATP13A2 Antibodies
    Search for Antibodies for ATP13A2 at Abcam  
    Uscn Antibodies for ATP13A2
    ThermoFisher Antibody for ATP13A2

    Assay Products for ATP13A2: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for ATP13A2
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for ATP13A2


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ATP13A2 for domains           About GeneDecksing

    5/8 InterPro domains/families (see all 8):
     IPR023306 ATPase_cation_domN
     IPR023299 ATPase_P-typ_cyto_domN
     IPR008250 ATPase_P-typ_transduc_dom_A
     IPR023214 HAD-like_dom
     IPR004014 ATPase_P-typ_cation-transptr_N

    Graphical View of Domain Structure for InterPro Entry Q9NQ11

    ProtoNet protein and cluster: Q9NQ11

    2 Blocks protein families:
    IPB001757 ATPase
    IPB008250 E1-E2 ATPase-associated region


    UniProtKB/Swiss-Prot: AT132_HUMAN, Q9NQ11
    Similarity: Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: AT132_HUMAN, Q9NQ11
    Function: May play a role in intracellular cation homeostasis and the maintenance of neuronal integrity
    Catalytic activity: ATP + H(2)O = ADP + phosphate

    Enzyme Numbers (IUBMB): EC 3.6.3.52 EC 3.6.3.82 EC 3.6.32 EC 3.6.3.-1

    miRNA
    Products:
        
    OriGene 3'-UTR Clone (see all 2): ATP13A2
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ATP13A2
    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate ATP13A2
    SwitchGear 3'UTR luciferase reporter plasmidATP13A2 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ATP13A2 (see all 4)
    OriGene shRNA RFP: ATP13A2
    OriGene siRNA: ATP13A2
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ATP13A2

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for ATP13A2

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ATP13A2 (see all 6)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ATP13A2 (see all 4)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 3): ATP13A2 (NM_022089)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ATP13A2
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ATP13A2 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for ATP13A2
    Search LifeMap BioReagents cell lines for ATP13A2

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ATP13A2

    Gene Ontology (GO): 6 molecular function terms (GO ID links to tree view) (see first 5):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166nucleotide binding ----
    GO:0005515protein binding IPI--
    GO:0005524ATP binding IEA--
    GO:0015662ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism IEA--
    GO:0016820hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances ----
    GO:0046872metal ion binding IEA--


    ATP13A2 for ontologies           About GeneDecksing



    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Neuroscience
    Neuroscience1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    1 Cell Signaling Technology (CST) Pathway for ATP13A2
        Neuroscience



    ATP13A2 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ATP13A2

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    5/11 Interacting proteins for ATP13A2 (Q9NQ111, 2, 3 ENSP000003272144) via UniProtKB, MINT, STRING, and/or I2D (see all 11)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CMTM6Q9NX762, 3, ENSP000002056364MINT-8252538 I2D: score=2 STRING: ENSP00000205636
    PRKCQQ047593I2D: score=2 
    AAK1Q2M2I81EBI-6308763,EBI-1383433
    BNIP3LO602381EBI-6308763,EBI-849893
    GAKO149761EBI-6308763,EBI-714707
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006812cation transport IEA--


    ATP13A2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ATP13A2
    Search CenterWatch for drugs/clinical trials and news about ATP13A2 / AT132 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ATP13A2 gene (3 alternative transcripts): 
    NM_001141973.1  NM_001141974.1  NM_022089.2  

    Unigene Cluster for ATP13A2:

    ATPase type 13A2
    Hs.128866  [show with all ESTs]
    Unigene Representative Sequence: NM_022089
    14 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000326735 ENST00000341676 ENST00000452699(uc001baa.2 uc001bab.2 uc001bac.2)
    ENST00000466561 ENST00000502418 ENST00000503552 ENST00000463860(uc009vpa.1 uc001bad.1)
    ENST00000502860 ENST00000509392 ENST00000506174 ENST00000510069 ENST00000511957
    ENST00000508222 ENST00000509619

    miRNA
    Products:
         
    OriGene 3'-UTR Clone (see all 2): ATP13A2
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ATP13A2
    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate ATP13A2
    SwitchGear 3'UTR luciferase reporter plasmidATP13A2 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ATP13A2 (see all 4)
    OriGene shRNA RFP: ATP13A2
    OriGene siRNA: ATP13A2
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ATP13A2
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ATP13A2 (see all 6)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ATP13A2 (see all 4)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 3): ATP13A2 (NM_022089)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ATP13A2
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ATP13A2 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ATP13A2
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ATP13A2
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ATP13A2
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ATP13A2

    Additional cDNA sequence: 

    AJ009947.1 AK025928.1 AK075310.1 AK290210.1 AL354615.1 AL833966.1 AY461712.1 AY987009.1 
    BC030267.1 BC034575.1 

    11 DOTS entries:

    DT.444266  DT.100039673  DT.100781975  DT.100781974  DT.100039674  DT.95283330  DT.95360628  DT.100039660 
    DT.95146554  DT.91712667  DT.95296187 

    24/154 AceView cDNA sequences (see all 154):

    AW503042 CR613271 BF725371 BU195927 BQ639456 BQ962923 CD672722 AW503046 
    BQ129322 CK823571 AA326792 CF243131 BQ068194 R58916 BQ129344 BQ876431 
    NM_022089 BC034575 BQ068680 AL354615 CA418950 BQ889151 BF001712 CB215966 

    GeneLoc Exon Structure

    5/11 Alternative Splicing Database (ASD) splice patterns (SP) for ATP13A2 (see all 11)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15a · 15b · 15c · 15d ·
    SP1:                                                  -                             -                                   -                                   -   
    SP2:                                                                                -                                   -                                   -   
    SP3:                                                  -                             -                                   -                                   -   
    SP4:                                                                                                                    -                                       
    SP5:                                                                                                                                                            

    ExUns: 15e ^ 16 ^ 17 ^ 18a · 18b · 18c ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26a · 26b ^ 27a · 27b ^ 28 ^ 29a · 29b
    SP1:  -                                                                                               -                     
    SP2:  -                                                                                               -                     
    SP3:  -                                                     -                                         -     -               
    SP4:                                                                                                                        
    SP5:                                                                                                  -     -               


    ECgene alternative splicing isoforms for ATP13A2

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ATP13A2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: ATATTTTCCT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See ATP13A2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ATP13A2

    SOURCE GeneReport for Unigene cluster: Hs.128866

    UniProtKB/Swiss-Prot: AT132_HUMAN, Q9NQ11
    Tissue specificity: Expressed in brain; protein levels are markedly increased in brain from subjects with Parkinson
    disease and subjects with dementia with Lewy bodies. Detected in pyramidal neurons located throughout the cingulate
    cortex (at protein level). In the substantia nigra, it is found in neuromelanin-positive dopaminergic neurons (at
    protein level)

        SABiosciences Custom PCR Arrays for ATP13A2
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ATP13A2
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ATP13A2
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ATP13A2
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ATP13A2
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ATP13A2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for ATP13A2 gene from 3/19 species (see all 19)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves ATP13A26
    hypothetical protein LOC419466
    42(a)
    1 ↔ 1
    21(4408250-4412858)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.27172 Xenopus laevis transcribed sequence with weak similarity more 76.58(n)    BJ060206.1 
    zebrafish
    (Danio rerio)
    Actinopterygii atp13a21 ATPase type 13A2 57.83(n)
    53.76(a)
      568666  NM_001080037.1  NP_001073506.1 


    ENSEMBL Gene Tree for ATP13A2 (if available)
    TreeFam Gene Tree for ATP13A2 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ATP13A2 gene
    ATP13A32  ATP13A52  ATP13A42  
    3 SIMAP similar genes for ATP13A2 using alignment to 10 protein entries:     AT132_HUMAN (see all proteins):
    ATP13A4    ATP13A3    ATP13A5

    ATP13A2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/582 NCBI SNPs in ATP13A2 are shown (see all 582    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1426161301,2
    C,F,other15567681(+) CCGCCG/AGTGTG 6 /R /W mis11Minor allele frequency- A:0.00NA 4546
    rs345852391,2
    C,F--15557120(+) CCTCAG/TCGCCA 5 M L int1 mis13Minor allele frequency- T:0.33NA 6
    rs94357351,2
    C,A,H,--15557293(+) CGGCCA/GGCACC 3 -- int11Minor allele frequency- G:0.00CSA 1
    rs563090441,2
    C--15557324(-) GAGGGAGGAGCC 
     CTGGG
    /-
    GTGCT
    3 -- int11Minor allele frequency- -:0.50CSA 2
    rs1996552511,2
    C--15560721(+) GGCTGG/TGGGGG 6 T P mis10--------
    rs561700271,2
    C--15560787(-) TCATCA/C/GTCCAC 9 I L V mis11NA 4512
    rs776307881,2
    C,--15560804(+) GCTCCG/TGGGGG 6 Q P mis10--------
    rs75354781,2
    C,--15560941(+) GAAAAC/TAGGct 3 -- int10--------
    rs763406331,2
    F,--15561046(+) GAAGGG/CTCTTA 3 -- int11Minor allele frequency- C:0.03EA 120
    rs1166272681,2
    C,F,--15561431(+) CTGCCA/GAGTGC 3 -- int11Minor allele frequency- G:0.05WA 118

    HapMap Linkage Disequilibrium report for ATP13A2 (17312453 - 17338423 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 3 variations for ATP13A2
         3 CNVs: 4212 3284 4211
    Human Gene Mutation Database (HGMD): ATP13A2

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ATP13A2
    DNA2.0 Custom Variant and Variant Library Synthesis for ATP13A2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ATP13A2 for disorders           About GeneDecksing

    OMIM gene information: 610513   
    OMIM disorders: 606693  
    UniProtKB/Swiss-Prot: AT132_HUMAN, Q9NQ11
  • Defects in ATP13A2 are the cause of Kufor-Rakeb syndrome (KRS) [MIM:606693]. A rare form of autosomal
  • recessive juvenile or early-onset, levodopa-responsive parkinsonism. In addition to typical parkinsonian signs,
    clinical manifestations of Kufor-Rakeb syndrome include behavioral problems, facial tremor, pyramidal tract
    dysfunction, supranuclear gaze palsy, and dementia

    13 diseases for ATP13A2:    About MalaCards
    parkinson's disease    ceroid lipofuscinosis    neuronal ceroid-lipofuscinosis    lewy body dementia
    gaze palsy    agnosia    essential tremor    multiple system atrophy
    tremor    dementia    neurodegeneration    neuronitis
    malaria

    1 disease from the University of Copenhagen DISEASES database for ATP13A2:
    Parkinson's disease
    Human Genome Epidemiology (HuGE) Navigator: ATP13A2 (16 documents)

    Export disorders for ATP13A2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ATP13A2 gene, integrated from 9 sources (see all 55):
    (articles sorted by number of sources associating them with ATP13A2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Hereditary parkinsonism with dementia is caused by mutations in ATP13A2, encoding a lysosomal type 5 P-type ATPase. (PubMed id 16964263)1, 2, 3 Ramirez A....Kubisch C. (2006)
    2. PARK9-associated ATP13A2 localizes to intracellular acidic vesicles and regulates cation homeostasis and neuronal integrity. (PubMed id 22186024)1, 2 Ramonet D.... Moore D.J. (2012)
    3. Novel ATP13A2 (PARK9) homozygous mutation in a family with marked phenotype variability. (PubMed id 20853184)1, 2 Santoro L....Bonifati V. (2011)
    4. Pathogenic effects of novel mutations in the P-type ATPase ATP13A2 (PARK9) causing Kufor-Rakeb syndrome, a form of early-onset parkinsonism. (PubMed id 21542062)1, 2 Park J.S.... Sue C.M. (2011)
    5. ATP13A2 variability in Parkinson disease. (PubMed id 19085912)1, 2 Vilarino-Guell C....Farrer M.J. (2009)
    6. Novel ATP13A2 variant associated with Parkinson disease in Taiwan and Singapore. (PubMed id 19015489)1, 2 Lin C.H.... Wu R.M. (2008)
    7. PARK9-linked parkinsonism in eastern Asia: mutation detection in ATP13A2 and clinical phenotype. (PubMed id 18413573)1, 2 Ning Y.P....Hattori N. (2008)
    8. ATP13A2 missense mutations in juvenile parkinsonism and young onset Parkinson disease. (PubMed id 17485642)1, 2 Di Fonzo A....Bonifati V. (2007)
    9. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (2006)
    10. Characterization of the P5 subfamily of P-type transport ATPases in mice. (PubMed id 15381061)1, 3 Schultheis P.J....Shull G.E. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 23400 HGNC: 30213 AceView: HSA9947 Ensembl:ENSG00000159363 euGenes: HUgn23400
    ECgene: ATP13A2 H-InvDB: ATP13A2

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ATP13A2 Pharmacogenomics, SNPs, Pathways
    GeneReviewshttp://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ATP13A2

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ATP13A2 gene:
    Search GeneIP for patents involving ATP13A2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     OriGene Antibodies for ATP13A2   OriGene shRNA RFP for ATP13A2  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ATP13A2   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ATP13A2  
     Browse OriGene Protein Over-expression Lysates   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for ATP13A2   OriGene 3'-UTR Clone for ATP13A2  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ATP13A2   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ATP13A2  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for ATP13A2   OriGene Custom Protein Services for ATP13A2  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ATP13A2
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ATP13A2
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ATP13A2
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ATP13A2
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ATP13A2
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ATP13A2
     GenScript Custom Purified and Recombinant Proteins Services for ATP13A2 GenScript cDNA clones with any tag delivered in your preferred vector for ATP13A2
     GenScript Custom Assay Services for ATP13A2 GenScript Custom Superior Antibodies Services for ATP13A2
     GenScript Custom overexpressing Cell Line Services for ATP13A2 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Antibodies & Assays for ATP13A2 

     Regulatory tfbs in ATP13A2 promoter
     Search Chromatin IP Primers for ATP13A2
     RT2 qPCR Primer Assay in human, mouse, rat ATP13A2
     Search GNC Networks for ATP13A2
     SABiosciences Custom PCR Arrays for ATP13A2
     Search Tocris compounds for ATP13A2
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     ATP13A2 antibodies
     ATP13A2 proteins
     Search for Antibodies for ATP13A2 at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for ATP13A2
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     ATP13A2 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for ATP13A2
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ATP13A2
     SwitchGear 3'UTR luciferase reporter plasmids for ATP13A2
     SwitchGear Promoter luciferase reporter plasmids for ATP13A2
     ThermoFisher Antibody for ATP13A2
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ATP13A2
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      ATP13A2 gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 100 solr: 1.4