Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ATP11A-AS1 Gene

Subcategory (RNA class) for ATP11A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ATP11A-AS1 Gene

  • ATP11A Antisense RNA 1 2 3 5
  • ATP11A Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ATP11A-AS1 Gene

Previous GeneCards Identifiers for ATP11A-AS1 Gene

  • GC00U933524
  • GC13M113400

Summaries for ATP11A-AS1 Gene

GeneCards Summary for ATP11A-AS1 Gene

ATP11A-AS1 (ATP11A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP11A-AS1 Gene

Genomics for ATP11A-AS1 Gene

Regulatory Elements for ATP11A-AS1 Gene

Enhancers for ATP11A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G112718 1.8 FANTOM5 Ensembl ENCODE dbSUPER 26.1 +33.6 33561 5.7 PKNOX1 FOXA2 ZFP64 ARID4B GLI4 ZNF48 GATA2 FOS ZHX2 REST ATP11A-AS1 ATP11A GC13M112689 PIR54522
GH13G112724 1.3 Ensembl ENCODE dbSUPER 30.2 +29.1 29133 2.0 ELF3 TFAP4 FOXA2 PKNOX1 SAP130 RAD21 ZIC2 YY1 RARA HIC1 ATP11A-AS1 ATP11A PIR54522 GC13M112689
GH13G112709 1.6 Ensembl ENCODE dbSUPER 18.1 +42.8 42788 4.1 PKNOX1 CREB3L1 ARNT ZFP64 ARID4B SIN3A ZNF2 YY1 FOS KLF13 ATP11A-AS1 ATP11AUN MCF2L TUBGCP3 GC13M112689 PIR54522
GH13G112702 1.4 Ensembl ENCODE dbSUPER 17.8 +50.6 50580 3.3 HDAC1 ATF1 CBX3 GLIS2 EGR1 FOS CREM EGR2 ZNF680 CEBPB ATP11A-AS1 ATP11AUN MCF2L ATP11A GC13M112689 PIR54522
GH13G112756 1.3 ENCODE dbSUPER 17.9 -2.4 -2402 1.9 FOXA2 MLX ZFP64 ARID4B GLI4 DMAP1 ZNF48 GLIS2 FOS SP5 ATP11A-AS1 ATP11A ENSG00000277545
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ATP11A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ATP11A-AS1 Gene

Chromosome:
13
Start:
112,745,449 bp from pter
End:
112,754,731 bp from pter
Size:
9,283 bases
Orientation:
Minus strand

Genomic View for ATP11A-AS1 Gene

Genes around ATP11A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP11A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP11A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP11A-AS1 Gene

Proteins for ATP11A-AS1 Gene

Post-translational modifications for ATP11A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP11A-AS1 Gene

Domains & Families for ATP11A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP11A-AS1 Gene

Function for ATP11A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP11A-AS1 Gene

Localization for ATP11A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ATP11A-AS1 Gene

Pathways & Interactions for ATP11A-AS1 Gene

SuperPathways for ATP11A-AS1 Gene

No Data Available

Interacting Proteins for ATP11A-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP11A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP11A-AS1 Gene

Drugs & Compounds for ATP11A-AS1 Gene

No Compound Related Data Available

Transcripts for ATP11A-AS1 Gene

mRNA/cDNA for ATP11A-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP11A-AS1 Gene

No ASD Table

Relevant External Links for ATP11A-AS1 Gene

GeneLoc Exon Structure for
ATP11A-AS1
ECgene alternative splicing isoforms for
ATP11A-AS1

Expression for ATP11A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATP11A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ATP11A-AS1 Gene

This gene is overexpressed in Testis (x30.5).
genes like me logo Genes that share expression patterns with ATP11A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP11A-AS1 Gene

Orthologs for ATP11A-AS1 Gene

Evolution for ATP11A-AS1 Gene

ENSEMBL:
Gene Tree for ATP11A-AS1 (if available)
TreeFam:
Gene Tree for ATP11A-AS1 (if available)

No data available for Orthologs for ATP11A-AS1 Gene

Paralogs for ATP11A-AS1 Gene

No data available for Paralogs for ATP11A-AS1 Gene

Variants for ATP11A-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP11A-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000082690 -- 112,753,388(+) GGTAC(A/G)TTTGC intron-variant, nc-transcript-variant
rs1000183896 -- 112,747,243(+) CAGGG(G/T)GGATT intron-variant, nc-transcript-variant
rs1000279494 -- 112,748,862(+) CTAAC(G/T)ACTGG intron-variant
rs1000478251 -- 112,754,466(+) CCGCC(A/G)AGGAA intron-variant, nc-transcript-variant
rs1000514480 -- 112,748,515(+) TATGC(A/G)CTCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ATP11A-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1527034 CNV deletion 17803354
esv2759969 CNV loss 17122850
esv3334178 CNV duplication 20981092
nsv1044644 CNV gain 25217958
nsv428291 CNV loss 18775914
nsv518792 CNV loss 19592680
nsv563229 CNV loss 21841781
nsv563230 CNV gain 21841781

Relevant External Links for ATP11A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP11A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP11A-AS1 Gene

Disorders for ATP11A-AS1 Gene

Relevant External Links for ATP11A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ATP11A-AS1

No disorders were found for ATP11A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP11A-AS1 Gene

Publications for ATP11A-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ATP11A-AS1 Gene

Sources for ATP11A-AS1 Gene

Content
Loading form....