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Aliases for ATG16L2 Gene

Aliases for ATG16L2 Gene

  • Autophagy Related 16 Like 2 2 3 5
  • WD Repeat-Containing Protein 80 3 4
  • APG16-Like 2 3 4
  • WDR80 3 4
  • ATG16 Autophagy Related 16-Like 2 (S. Cerevisiae) 2
  • Autophagy Related 16-Like 2 (S. Cerevisiae) 2
  • ATG16 Autophagy Related 16-Like 2 3
  • Autophagy Related 16-Like 2 3
  • ATG16B 3

External Ids for ATG16L2 Gene

Previous GeneCards Identifiers for ATG16L2 Gene

  • GC11P072203
  • GC11P072525
  • GC11P068820

Summaries for ATG16L2 Gene

GeneCards Summary for ATG16L2 Gene

ATG16L2 (Autophagy Related 16 Like 2) is a Protein Coding gene. Among its related pathways are Regulation of autophagy. An important paralog of this gene is ATG16L1.

UniProtKB/Swiss-Prot for ATG16L2 Gene

  • May play a role in autophagy.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATG16L2 Gene

Genomics for ATG16L2 Gene

Regulatory Elements for ATG16L2 Gene

Promoters for ATG16L2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ATG16L2 on UCSC Golden Path with GeneCards custom track

Genomic Location for ATG16L2 Gene

Chromosome:
11
Start:
72,814,308 bp from pter
End:
72,843,674 bp from pter
Size:
29,367 bases
Orientation:
Plus strand

Genomic View for ATG16L2 Gene

Genes around ATG16L2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATG16L2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATG16L2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATG16L2 Gene

Proteins for ATG16L2 Gene

  • Protein details for ATG16L2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NAA4-A16L2_HUMAN
    Recommended name:
    Autophagy-related protein 16-2
    Protein Accession:
    Q8NAA4
    Secondary Accessions:
    • A5PL30
    • B2RPK5
    • Q658V4
    • Q6PID3
    • Q8NBG0

    Protein attributes for ATG16L2 Gene

    Size:
    619 amino acids
    Molecular mass:
    68998 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ATG16L2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ATG16L2 Gene

Proteomics data for ATG16L2 Gene at MOPED

Post-translational modifications for ATG16L2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

No data available for DME Specific Peptides for ATG16L2 Gene

Domains & Families for ATG16L2 Gene

Gene Families for ATG16L2 Gene

Suggested Antigen Peptide Sequences for ATG16L2 Gene

Graphical View of Domain Structure for InterPro Entry

Q8NAA4

UniProtKB/Swiss-Prot:

A16L2_HUMAN :
  • Belongs to the WD repeat ATG16 family.
  • Contains 7 WD repeats.
Family:
  • Belongs to the WD repeat ATG16 family.
Similarity:
  • Contains 7 WD repeats.
genes like me logo Genes that share domains with ATG16L2: view

Function for ATG16L2 Gene

Molecular function for ATG16L2 Gene

UniProtKB/Swiss-Prot Function:
May play a role in autophagy.

Phenotypes for ATG16L2 Gene

genes like me logo Genes that share phenotypes with ATG16L2: view

Animal Model Products

CRISPR Products

miRNA for ATG16L2 Gene

miRTarBase miRNAs that target ATG16L2

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ATG16L2 Gene

Localization for ATG16L2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ATG16L2 Gene

Cytoplasm. Note=Localizes also to discrete punctae along the ciliary axoneme. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ATG16L2 Gene COMPARTMENTS Subcellular localization image for ATG16L2 gene
Compartment Confidence
nucleus 5
vacuole 3
cytosol 2
mitochondrion 2

No data available for Gene Ontology (GO) - Cellular Components for ATG16L2 Gene

Pathways & Interactions for ATG16L2 Gene

SuperPathways for ATG16L2 Gene

Superpath Contained pathways
1 Regulation of autophagy
genes like me logo Genes that share pathways with ATG16L2: view

Pathways by source for ATG16L2 Gene

1 GeneTex pathway for ATG16L2 Gene
1 KEGG pathway for ATG16L2 Gene

Gene Ontology (GO) - Biological Process for ATG16L2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0039689 negative stranded viral RNA replication IEA,IBA --
genes like me logo Genes that share ontologies with ATG16L2: view

No data available for SIGNOR curated interactions for ATG16L2 Gene

Drugs & Compounds for ATG16L2 Gene

No Compound Related Data Available

Transcripts for ATG16L2 Gene

Unigene Clusters for ATG16L2 Gene

Autophagy related 16-like 2 (S. cerevisiae):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ATG16L2 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b · 6c ^ 7a · 7b · 7c ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b ^ 12 ^
SP1: - - - - - - - - -
SP2: - - - - - - - - - -
SP3: - - - - -
SP4: - - - - -
SP5: - - - -
SP6:
SP7: - - - - - - - - - - - - - - - - - - - -
SP8: - -
SP9: - -
SP10:
SP11:

ExUns: 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17 ^ 18 ^ 19
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7: - - - -
SP8:
SP9:
SP10:
SP11:

Relevant External Links for ATG16L2 Gene

GeneLoc Exon Structure for
ATG16L2
ECgene alternative splicing isoforms for
ATG16L2

Expression for ATG16L2 Gene

mRNA expression in normal human tissues for ATG16L2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ATG16L2 Gene

This gene is overexpressed in Whole Blood (x15.7) and Spleen (x5.3).

SOURCE GeneReport for Unigene cluster for ATG16L2 Gene Hs.653186

genes like me logo Genes that share expression patterns with ATG16L2: view

Primer Products

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for ATG16L2 Gene

Orthologs for ATG16L2 Gene

This gene was present in the common ancestor of animals.

Orthologs for ATG16L2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ATG16L2 35
  • 98.24 (n)
  • 98.02 (a)
ATG16L2 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ATG16L2 35
  • 88.04 (n)
  • 86.2 (a)
ATG16L2 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ATG16L2 36
  • 80 (a)
OneToOne
ATG16L2 35
  • 87.11 (n)
  • 84.5 (a)
mouse
(Mus musculus)
Mammalia Atg16l2 16
Atg16l2 35
  • 85.5 (n)
  • 83.77 (a)
Atg16l2 36
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ATG16L2 36
  • 65 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ATG16L2 36
  • 70 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Atg16l2 35
  • 84.9 (n)
  • 82.63 (a)
lizard
(Anolis carolinensis)
Reptilia ATG16L2 36
  • 67 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100485143 35
  • 55.18 (n)
  • 44.29 (a)
zebrafish
(Danio rerio)
Actinopterygii atg16l2 36
  • 28 (a)
OneToMany
ATG16L2 (2 of 2) 36
  • 59 (a)
OneToMany
LOC100007282 35
  • 61.58 (n)
  • 57.43 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG31033 36
  • 30 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea atg-16.1 36
  • 23 (a)
ManyToMany
atg-16.2 36
  • 26 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 42 (a)
OneToMany
Species with no ortholog for ATG16L2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ATG16L2 Gene

ENSEMBL:
Gene Tree for ATG16L2 (if available)
TreeFam:
Gene Tree for ATG16L2 (if available)

Paralogs for ATG16L2 Gene

Paralogs for ATG16L2 Gene

genes like me logo Genes that share paralogs with ATG16L2: view

Variants for ATG16L2 Gene

Sequence variations from dbSNP and Humsavar for ATG16L2 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs11235604 - 72,822,491(+) AGGCG(C/T)GGGTG nc-transcript-variant, upstream-variant-2KB, reference, missense
rs891655 -- 72,817,928(-) ACACA(A/C/G/T)GAGTA intron-variant
rs1808621 -- 72,817,364(-) GCACG(C/T)TCCAG intron-variant
rs2282613 -- 72,819,151(+) GCTGT(C/T)CTTCC intron-variant
rs3214595 -- 72,825,523(+) ATATT(-/C)TGTGG intron-variant

Variation tolerance for ATG16L2 Gene

Residual Variation Intolerance Score: 41.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.92; 59.40% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ATG16L2 Gene

HapMap Linkage Disequilibrium report
ATG16L2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ATG16L2 Gene

Disorders for ATG16L2 Gene

Relevant External Links for ATG16L2

Genetic Association Database (GAD)
ATG16L2
Human Genome Epidemiology (HuGE) Navigator
ATG16L2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ATG16L2

No disorders were found for ATG16L2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATG16L2 Gene

Publications for ATG16L2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 67
  2. Characterization of long cDNA clones from human adult spleen. (PMID: 11214971) Hattori A. … Ohara O. (DNA Res. 2000) 2 3
  3. FBXW7 modulates cellular stress response and metastatic potential through a88HSF1 post-translational modification. (PMID: 25720964) Kourtis N. … Aifantis I. (Nat. Cell Biol. 2015) 3
  4. Autophagy-related gene16L2, a potential serum biomarker of multiple sclerosis evaluated by bead-based proteomic technology. (PMID: 24406150) Yin L. … Geng X. (Neurosci. Lett. 2014) 3
  5. Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations. (PMID: 23850713) Yang S.K. … Song K. (Gut 2014) 3

Products for ATG16L2 Gene

Sources for ATG16L2 Gene

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