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Aliases for ATG101 Gene

Aliases for ATG101 Gene

  • Autophagy Related 101 2 3 5
  • C12orf44 3 4
  • Chromosome 12 Open Reading Frame 44 2
  • Autophagy-Related Protein 101 3
  • Atg13-Interacting Protein 3

External Ids for ATG101 Gene

Previous HGNC Symbols for ATG101 Gene

  • C12orf44

Previous GeneCards Identifiers for ATG101 Gene

  • GC12P052464

Summaries for ATG101 Gene

GeneCards Summary for ATG101 Gene

ATG101 (Autophagy Related 101) is a Protein Coding gene. Among its related pathways are Cellular Senescence and mTOR signalling. GO annotations related to this gene include identical protein binding and protein complex binding.

UniProtKB/Swiss-Prot for ATG101 Gene

  • Autophagy factor required for autophagosome formation. Stabilizes ATG13, protecting it from proteasomal degradation.

Gene Wiki entry for ATG101 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATG101 Gene

Genomics for ATG101 Gene

Regulatory Elements for ATG101 Gene

Enhancers for ATG101 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F052031 1.6 FANTOM5 Ensembl ENCODE 12 -33.8 -33767 7.3 PKNOX1 ARID4B SIN3A ZNF2 YY1 ZNF207 FOS SP3 SP5 NFYC TFCP2 CSRNP2 ATG101 RNU6-574P NR4A1 OR7E47P KRT6C SLC4A8 GRASP ACVR1B
GH12F052277 1.6 FANTOM5 Ensembl ENCODE 3 +212.6 212647 9.2 PKNOX1 ATF1 SIN3A FEZF1 ZNF48 BRCA1 GLIS2 ELK1 ZNF143 FOS KRT86 KRT80 KRT7 KRT87P ZNF740 KRT83 NR4A1 ATG101 KRT5 KRT6A
GH12F052143 1.3 FANTOM5 Ensembl ENCODE 2.5 +81.4 81358 14.9 HDGF PKNOX1 SIN3A YBX1 BRCA1 GLIS2 ELK1 ZNF143 ZNF207 FOS TFCP2 KRT5 ENSG00000257989 KRT7 KRT6A OR7E47P IGFBP6 KRT6C KRT80 ATG101
GH12F052515 1.6 FANTOM5 Ensembl ENCODE 2.3 +451.8 451799 11.4 ELF3 PKNOX1 ZNF133 ARID4B RAD21 ZNF48 ZNF121 GLIS2 GATA2 ZNF366 KRT5 KRT6A SP1 KRT6C KRT71 KRT74 HNRNPA3P10 KRT84 KRT2 KRT4
GH12F052180 1.3 FANTOM5 Ensembl ENCODE 1.6 +119.2 119219 15.1 PKNOX1 SIN3A FEZF1 ZNF2 GLIS2 ELK1 ZNF416 FOS ZNF263 SP3 KRT80 KRT7 ZNF740 C12orf80 NR4A1 FIGNL2 ACVRL1 ATG101 GRASP ACVR1B
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ATG101 on UCSC Golden Path with GeneCards custom track

Promoters for ATG101 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001463544 854 2201 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2

Genomic Location for ATG101 Gene

Chromosome:
12
Start:
52,069,246 bp from pter
End:
52,077,495 bp from pter
Size:
8,250 bases
Orientation:
Plus strand

Genomic View for ATG101 Gene

Genes around ATG101 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATG101 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATG101 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATG101 Gene

Proteins for ATG101 Gene

  • Protein details for ATG101 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BSB4-ATGA1_HUMAN
    Recommended name:
    Autophagy-related protein 101
    Protein Accession:
    Q9BSB4
    Secondary Accessions:
    • Q9HAE2
    • Q9HBN1

    Protein attributes for ATG101 Gene

    Size:
    218 amino acids
    Molecular mass:
    25003 Da
    Quaternary structure:
    • Interacts with ATG13 (PubMed:19287211, PubMed:19597335, PubMed:26299944). Associates with a complex composed of ATG13, ULK1 and RB1CC1; the association with this complex requires the presence of ATG13 (PubMed:19287211, PubMed:19597335).
    SequenceCaution:
    • Sequence=AAG17273.1; Type=Frameshift; Positions=110; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for ATG101 Gene

neXtProt entry for ATG101 Gene

Post-translational modifications for ATG101 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ATG101 Gene

No data available for DME Specific Peptides for ATG101 Gene

Domains & Families for ATG101 Gene

Gene Families for ATG101 Gene

Protein Domains for ATG101 Gene

Suggested Antigen Peptide Sequences for ATG101 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BSB4

UniProtKB/Swiss-Prot:

ATGA1_HUMAN :
  • Belongs to the ATG101 family.
Family:
  • Belongs to the ATG101 family.
genes like me logo Genes that share domains with ATG101: view

Function for ATG101 Gene

Molecular function for ATG101 Gene

UniProtKB/Swiss-Prot Function:
Autophagy factor required for autophagosome formation. Stabilizes ATG13, protecting it from proteasomal degradation.

Gene Ontology (GO) - Molecular Function for ATG101 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 19597335
GO:0032403 protein complex binding IPI 19597335
GO:0042802 identical protein binding IPI 20562859
genes like me logo Genes that share ontologies with ATG101: view
genes like me logo Genes that share phenotypes with ATG101: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATG101 Gene

Localization for ATG101 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ATG101 Gene

Cytoplasm. Preautophagosomal structure. Note=Under starvation conditions, it is localized to puncate structures primarily representing the isolation membrane; the isolation membrane sequesters a portion of the cytoplasm resulting in autophagosome formation. {ECO:0000269 PubMed:19597335}.

Gene Ontology (GO) - Cellular Components for ATG101 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000407 pre-autophagosomal structure IEA,IDA 19597335
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with ATG101: view

No data available for Subcellular locations from COMPARTMENTS for ATG101 Gene

Pathways & Interactions for ATG101 Gene

genes like me logo Genes that share pathways with ATG101: view

Pathways by source for ATG101 Gene

1 GeneTex pathway for ATG101 Gene
2 Reactome pathways for ATG101 Gene
1 KEGG pathway for ATG101 Gene

SIGNOR curated interactions for ATG101 Gene

Activates:

Gene Ontology (GO) - Biological Process for ATG101 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000045 autophagosome assembly IMP 19597335
GO:0006914 autophagy IEA --
GO:0016236 macroautophagy TAS --
genes like me logo Genes that share ontologies with ATG101: view

Transcripts for ATG101 Gene

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ATG101 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b
SP1: -
SP2: - -
SP3: -
SP4:

Relevant External Links for ATG101 Gene

GeneLoc Exon Structure for
ATG101
ECgene alternative splicing isoforms for
ATG101

Expression for ATG101 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ATG101 Gene

Protein differential expression in normal tissues from HIPED for ATG101 Gene

This gene is overexpressed in Brain (17.8), Peripheral blood mononuclear cells (13.5), and Frontal cortex (7.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ATG101 Gene



NURSA nuclear receptor signaling pathways regulating expression of ATG101 Gene:

ATG101
genes like me logo Genes that share expression patterns with ATG101: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ATG101 Gene

Orthologs for ATG101 Gene

This gene was present in the common ancestor of animals.

Orthologs for ATG101 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C12orf44 35
  • 100 (a)
OneToOne
C12H12orf44 34
  • 99.69 (n)
cow
(Bos Taurus)
Mammalia ATG101 35
  • 99 (a)
OneToOne
C5H12orf44 34
  • 93.12 (n)
dog
(Canis familiaris)
Mammalia C12ORF44 35
  • 99 (a)
OneToOne
C27H12orf44 34
  • 92.05 (n)
rat
(Rattus norvegicus)
Mammalia RGD1359310 34
  • 91.44 (n)
mouse
(Mus musculus)
Mammalia 9430023L20Rik 34 35
  • 91.13 (n)
Atg101 16
lizard
(Anolis carolinensis)
Reptilia C12orf44 35
  • 94 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c12orf44 34
  • 78.13 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.11635 34
zebrafish
(Danio rerio)
Actinopterygii C10H12orf44 35
  • 87 (a)
OneToOne
atg101 34
  • 80.12 (n)
Dr.12242 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8586 34
fruit fly
(Drosophila melanogaster)
Insecta CG7053 34 35
  • 61.77 (n)
worm
(Caenorhabditis elegans)
Secernentea CELE_Y69A2AR.7 34
  • 51.28 (n)
epg-9 35
  • 31 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.9278 35
  • 50 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.11146 34
Species where no ortholog for ATG101 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ATG101 Gene

ENSEMBL:
Gene Tree for ATG101 (if available)
TreeFam:
Gene Tree for ATG101 (if available)

Paralogs for ATG101 Gene

(1) SIMAP similar genes for ATG101 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ATG101: view

No data available for Paralogs for ATG101 Gene

Variants for ATG101 Gene

Sequence variations from dbSNP and Humsavar for ATG101 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10783487 -- 52,068,035(+) CATGT(A/G)TTAGA upstream-variant-2KB
rs10876230 -- 52,072,398(+) TGATT(C/T)GCTTA intron-variant
rs10876231 -- 52,072,421(+) AAGAT(A/G)TAGAT intron-variant
rs10876232 -- 52,072,572(+) ACCCT(A/G)GAGTC intron-variant
rs11169993 -- 52,068,098(+) CTGGA(A/G)TGCCG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ATG101 Gene

Variant ID Type Subtype PubMed ID
nsv470292 CNV loss 18288195
nsv558898 CNV loss 21841781
nsv832409 CNV loss 17160897

Variation tolerance for ATG101 Gene

Residual Variation Intolerance Score: 26.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.31; 6.81% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ATG101 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATG101

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ATG101 Gene

Disorders for ATG101 Gene

Relevant External Links for ATG101

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ATG101

No disorders were found for ATG101 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATG101 Gene

Publications for ATG101 Gene

  1. A novel, human Atg13 binding protein, Atg101, interacts with ULK1 and is essential for macroautophagy. (PMID: 19287211) Mercer C.A. … Dennis P.B. (Autophagy 2009) 2 3 4 64
  2. Atg101, a novel mammalian autophagy protein interacting with Atg13. (PMID: 19597335) Hosokawa N. … Mizushima N. (Autophagy 2009) 2 3 4 64
  3. Structure of the human Atg13-Atg101 HORMA heterodimer: an interaction hub within the ULK1 complex. (PMID: 26299944) Qi S. … Hurley J.H. (Structure 2015) 3 4 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. The variant Polycomb Repressor Complex 1 component PCGF1 interacts with a pluripotency sub-network that includes DPPA4, a regulator of embryogenesis. (PMID: 26687479) Oliviero G. … Cagney G. (Sci. Rep. 2015) 3 64

Products for ATG101 Gene

Sources for ATG101 Gene

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