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Aliases for ATG10-AS1 Gene

Subcategory (RNA class) for ATG10-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for ATG10-AS1 Gene

  • ATG10 Antisense RNA 1 2 3 5
  • ATG10 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ATG10-AS1 Gene

ORGUL Members for ATG10-AS1 Gene

Previous GeneCards Identifiers for ATG10-AS1 Gene

  • GC00U933929
  • GC05M081369

Summaries for ATG10-AS1 Gene

GeneCards Summary for ATG10-AS1 Gene

ATG10-AS1 (ATG10 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATG10-AS1 Gene

Genomics for ATG10-AS1 Gene

Regulatory Elements for ATG10-AS1 Gene

Enhancers for ATG10-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F082100 1.2 Ensembl ENCODE 12.4 -27.2 -27199 0.6 CTCF CBX5 CBFB TCF7 HMBOX1 JUNB RAD21 ATG10-AS1 GC05P082088 PIR51236 GC05P082140
GH05F082031 1.1 ENCODE 12.4 +42.0 42006 1.0 SCRT1 RFX1 POLR2A SCRT2 MAX ATG10 ATG10-AS1 PPIAP11 GC05P082067
GH05F082023 0.8 VISTA 12.4 +49.2 49239 2.8 CTCF HLF POU5F1 FOXP2 CEBPG ATG10-AS1 PPIAP11 GC05P082067
GH05F082105 0.5 Ensembl 11.9 -32.7 -32699 1.6 PKNOX1 RNF2 POLR2A HNF4G CEBPB CEBPG FOXP2 ATG10 ATG10-AS1 GC05P082088 PIR51236 GC05P082140
GH05F082107 0.6 ENCODE 11.9 -33.8 -33755 0.2 CTCF FOXK2 RNF2 SMC3 FOXP2 EMSY RAD21 ATG10-AS1 GC05P082088 PIR51236 GC05P082140
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ATG10-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ATG10-AS1 Gene

Chromosome:
5
Start:
82,073,055 bp from pter
End:
82,073,702 bp from pter
Size:
648 bases
Orientation:
Minus strand

Genomic View for ATG10-AS1 Gene

Genes around ATG10-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATG10-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATG10-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ATG10-AS1 Gene

Proteins for ATG10-AS1 Gene

Post-translational modifications for ATG10-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATG10-AS1 Gene

Domains & Families for ATG10-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATG10-AS1 Gene

Function for ATG10-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATG10-AS1 Gene

Localization for ATG10-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ATG10-AS1 Gene

Pathways & Interactions for ATG10-AS1 Gene

SuperPathways for ATG10-AS1 Gene

No Data Available

Interacting Proteins for ATG10-AS1 Gene

Gene Ontology (GO) - Biological Process for ATG10-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATG10-AS1 Gene

Transcripts for ATG10-AS1 Gene

mRNA/cDNA for ATG10-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATG10-AS1 Gene

No ASD Table

Relevant External Links for ATG10-AS1 Gene

GeneLoc Exon Structure for
ATG10-AS1
ECgene alternative splicing isoforms for
ATG10-AS1

Expression for ATG10-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ATG10-AS1 Gene

genes like me logo Genes that share expression patterns with ATG10-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ATG10-AS1 Gene

Orthologs for ATG10-AS1 Gene

Evolution for ATG10-AS1 Gene

ENSEMBL:
Gene Tree for ATG10-AS1 (if available)
TreeFam:
Gene Tree for ATG10-AS1 (if available)

No data available for Orthologs for ATG10-AS1 Gene

Paralogs for ATG10-AS1 Gene

No data available for Paralogs for ATG10-AS1 Gene

Variants for ATG10-AS1 Gene

Relevant External Links for ATG10-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATG10-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ATG10-AS1 Gene

Disorders for ATG10-AS1 Gene

No disorders were found for ATG10-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ATG10-AS1 Gene

Publications for ATG10-AS1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64

Products for ATG10-AS1 Gene

Sources for ATG10-AS1 Gene

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