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Aliases for ATF4P4 Gene

Subcategory (RNA class) for ATF4P4 Gene

lncRNA

Aliases for ATF4P4 Gene

  • Activating Transcription Factor 4 Pseudogene 4 2 3 5
  • Activating Transcription Factor 4B 2 3
  • Activating Transcription Factor 4 (Tax-Responsive Enhancer Element B67) Pseudogene 3
  • ATF4B 3

External Ids for ATF4P4 Gene

ORGUL Members for ATF4P4 Gene

Previous HGNC Symbols for ATF4P4 Gene

  • ATF4B

Previous GeneCards Identifiers for ATF4P4 Gene

  • GC11P113661
  • GC11P113662
  • GC11P113793
  • GC11P113798
  • GC11P113801
  • GC11P113804

Summaries for ATF4P4 Gene

GeneCards Summary for ATF4P4 Gene

ATF4P4 (Activating Transcription Factor 4 Pseudogene 4) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for ATF4P4 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for ATF4P4

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ATF4P4 Gene

Genomics for ATF4P4 Gene

Regulatory Elements for ATF4P4 Gene

Enhancers for ATF4P4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F113806 0.2 ENCODE 24.2 +18.5 18535 3.1 GATAD2A CTCF ARID4B RAD21 ZNF316 ZBTB48 SMC3 HNF4G SMAD4 ATF4P4 RNU6-1107P LRRC37A13P ENSG00000256452 PIR45209 GC11P113805
GH11F113837 0.6 FANTOM5 21.2 +48.7 48717 0.8 GATA2 ZNF740 MAFG ATF4P4 CLDN25 DRD2 LOC100421976 GC11P113860
GH11F113847 0.5 ENCODE 21.2 +60.4 60408 3.8 ZNF146 CBX3 REST ZBTB40 ZNF316 POLR2A SCRT2 POU5F1 KDM1A ATF4P4 USP28 HTR3A LRRC37A13P DRD2 GC11P113860 LOC100421976
GH11F113839 0.2 ENCODE 20.9 +50.7 50718 1.0 PAF1 PKNOX1 RFX1 MTA2 JUNB BMI1 TBX21 IKZF1 NBN MLLT1 ATF4P4 GC11P113860 LOC100421976
GH11F113862 0.9 Ensembl ENCODE 20.6 +73.6 73551 1.2 SOX13 SOX5 TEAD1 ZFHX2 POU5F1 TCF7 MAFK EGR2 ATF4P4 NNMT GC11M113865 RNU6-1107P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ATF4P4 on UCSC Golden Path with GeneCards custom track

Promoters for ATF4P4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001772365 1470 1399

Genomic Location for ATF4P4 Gene

Chromosome:
11
Start:
113,789,231 bp from pter
End:
113,791,453 bp from pter
Size:
2,223 bases
Orientation:
Plus strand

Genomic View for ATF4P4 Gene

Genes around ATF4P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATF4P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATF4P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATF4P4 Gene

ORGUL Member Location for ATF4P4 Gene

ORGUL Member Location for ATF4P4 gene

Proteins for ATF4P4 Gene

Post-translational modifications for ATF4P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATF4P4 Gene

Domains & Families for ATF4P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATF4P4 Gene

Function for ATF4P4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATF4P4 Gene

Localization for ATF4P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ATF4P4 Gene

Pathways & Interactions for ATF4P4 Gene

SuperPathways for ATF4P4 Gene

No Data Available

Interacting Proteins for ATF4P4 Gene

Gene Ontology (GO) - Biological Process for ATF4P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATF4P4 Gene

Transcripts for ATF4P4 Gene

fRNAdb Secondary structures for ATF4P4 Gene

  • FR269043

mRNA/cDNA for ATF4P4 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATF4P4 Gene

No ASD Table

Relevant External Links for ATF4P4 Gene

GeneLoc Exon Structure for
ATF4P4
ECgene alternative splicing isoforms for
ATF4P4

Expression for ATF4P4 Gene

mRNA expression in normal human tissues for ATF4P4 Gene

mRNA expression in normal human tissues for ATF4P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of ATF4P4 Gene:

ATF4P4
genes like me logo Genes that share expression patterns with ATF4P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ATF4P4 Gene

Orthologs for ATF4P4 Gene

Evolution for ATF4P4 Gene

ENSEMBL:
Gene Tree for ATF4P4 (if available)
TreeFam:
Gene Tree for ATF4P4 (if available)

No data available for Orthologs for ATF4P4 Gene

Paralogs for ATF4P4 Gene

No data available for Paralogs for ATF4P4 Gene

Variants for ATF4P4 Gene

Relevant External Links for ATF4P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATF4P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ATF4P4 Gene

Disorders for ATF4P4 Gene

No disorders were found for ATF4P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ATF4P4 Gene

Publications for ATF4P4 Gene

  1. A sequence-ready BAC/PAC contig and partial transcript map of approximately 1.5 Mb in human chromosome 17q25 comprising multiple disease genes. (PMID: 10610718) KuhlenbAoumer G. … Timmerman V. (Genomics 1999) 2 3 64
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for ATF4P4 Gene

Sources for ATF4P4 Gene

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