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Aliases & Descriptions for ATF3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ATF3deltaZip2 2 ATF3deltaZip2c 2 ATF3deltaZip3 2 OTTHUMP00000034887 2 OTTHUMP00000034890 2
Descriptions activating transcription factor 3 2 , 3 cAMP-dependent transcription factor ATF-3 3
Search outside databases for aliases for ATF3 genePrevious GC identifers: GC01P211461 GC01P208625 GC01P209398 GC01P209838 GC01P209170
Summaries for ATF3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ATF3 : Activating transcription factor 3 is a member of the mammalian activation transcription factor/cAMPresponsive element-binding (CREB) protein family of transcription factors. Multiple transcriptvariants encoding two different isoforms have been found for this gene. The longer isoformrepresses rather than activates transcription from promoters with ATF binding elements. Theshorter isoform (deltaZip2) lacks the leucine zipper protein-dimerization motif and does not bindto DNA, and it stimulates transcription presumably by sequestering inhibitory co-factors away fromthe promoter. It is possible that alternative splicing of the ATF3 gene may be physiologicallyimportant in the regulation of target genes. [provided by RefSeq] UniProtKB/Swiss-Prot: ATF3_HUMAN, P18847 Function : This protein binds the cAMP response element (CRE) (consensus: 5'-GTGACGT[AC][AG]-3'), asequence present in many viral and cellular promoters. Represses transcription from promoters withATF sites. It may repress transcription by stabilizing the binding of inhibitory cofactors at thepromoter. Isoform 2 activates transcription presumably by sequestering inhibitory cofactors awayfrom the promoters
Gene Wiki entry for ATF3
Genomic Location for ATF3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ATF3 gene Entrez Gene cytogenetic band: 1q32.3 Ensembl cytogenetic band: 1q32.3 HGNC cytogenetic band: 1q32.3 ATF3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P210805:
(about GC identifiers )
Start:
210,805,320 bp from pter
End:
210,860,740 bp from pter
Size:
55,421 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_021877.18 Proteins for ATF3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ATF3_HUMAN, P18847 (See
protein sequence )Recommended Name: Cyclic AMP-dependent transcription factor ATF-3 Size : 181 amino acids; 20576 Da
Subunit : Binds DNA as a homodimer or a heterodimer
Subcellular location : NucleusAlternative splicing : 2 isoforms : P18847-1 P18847-2
REFSEQ proteins (4 alternative transcripts):
NP_001025458.1 NP_001035709.1 NP_001665.1 NP_004015.4 ENSEMBL proteins: ENSP00000355954 ENSP00000344352 ENSP00000375771 ENSP00000355951 ENSP00000355950 ENSP00000336908 ENSP00000355948 ENSP00000355952 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ATF3 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ATF3: Assays for ATF3:
Protein
Domains/ Families for ATF3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P18847 ProtoNet protein and cluster: P18847
1 Blocks protein family : IPB000837 Fos transforming protein signature UniProtKB/Swiss-Prot: ATF3_HUMAN, P18847 Similarity : Belongs to the bZIP family. ATF subfamilySimilarity : Contains 1 bZIP domain
Gene Function for ATF3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001040619 Applied Biosystems Silencer ® siRNAs for ATF3 Sigma-Aldrich siRNA for ATF3 Sigma-Aldrich shRNA Panels and shRNA for ATF3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001030287                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001030287                                  untagged cDNA clones in CMV expression vector (see all 6 ): AB078027  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001674 UniProtKB/Swiss-Prot: ATF3_HUMAN, P18847 Function : This protein binds the cAMP response element (CRE) (consensus: 5'-GTGACGT[AC][AG]-3'), asequence present in many viral and cellular promoters. Represses transcription from promoters withATF sites. It may repress transcription by stabilizing the binding of inhibitory cofactors at thepromoter. Isoform 2 activates transcription presumably by sequestering inhibitory cofactors awayfrom the promoters
4 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Atf3) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for ATF3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for ATF3 5/41 Interacting proteins for ATF3 (ENSP00000355954 3 P18847 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 41
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006355 regulation of transcription, DNA-dependent
IEA --
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Drugs & Compounds for ATF3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ATF3 10/16 Novoseek chemical compound relationships for ATF3 gene (see all 16
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
amino acid
61.84
12
16989641 (4), 17042743 (1), 16026328 (1), 12881527 (1)
leucine
37.99
6
12815047 (1), 12225289 (1), 8152431 (1), 16516039 (1)
oligonucleotide
37.33
4
10965025 (2), 11589305 (1), 15280448 (1)
deoxynivalenol
33.65
3
19360757 (2), 19101521 (1)
cyclic amp
33.30
12
7935470 (2), 17952119 (1), 8007991 (1), 16263788 (1) (see all 7 )
ccl4
6.95
7
8622660 (3), 9343434 (1)
12-o-tetradecanoylphorbol 13-acetate
5.78
7
17108111 (5)
oxygen
0.00
3
16847457 (1), 12833146 (1), 18776171 (1)
nitric oxide
0.00
5
15102941 (3), 15199129 (2)
homocysteine
0.00
10
10979959 (6), 11726207 (1)
About this table
Transcripts for ATF3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001040619 Sigma-Aldrich siRNA for ATF3 Sigma-Aldrich shRNA Panels and shRNA for ATF3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001030287 NM_001040619 NM_001674 NM_004024
REFSEQ mRNAs for ATF3 gene (4 alternative transcripts): NM_001030287.2 NM_001040619.1 NM_001674.2 NM_004024.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001030287 NM_001040619 NM_001674 NM_004024
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001030287                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001030287                                  untagged cDNA clones in CMV expression vector (see all 6 ): AB078027  
Additional cDNA sequence: AB066566.1 AB078026.1 AB078027.1 AB078028.1 AK123699.1 AK125255.1 AK294296.1 AK312998.1 AY313926.1 AY313927.1 BC006322.2 BT006996.1 CR450334.1 CR600751.1 CR602765.1 CR612905.1 CR614684.1 CR614862.1 CR619424.1 CR620886.1 CR626784.1 L19871.1
23 DOTS entries : DT.216448 DT.70100962 DT.95279991 DT.100029805 DT.97844923 DT.99961573 DT.100887717 DT.95279990 DT.70103799 DT.100887713 DT.100887716 DT.91775485 DT.121438085 DT.100706708 DT.95279995 DT.101981395 DT.121438139 DT.95279988 DT.97844922 DT.100887714 DT.121438163 DT.95279985 DT.95279994
24/277 AceView cDNA sequences (see all 277
):AB078026 CR600751 CR450334 AY313926 BM742949 AU141602 AB078028 BU752221 AB078027 AW028160 BC006322 CR612905 CB155444 AI800224 BX337431 AB066566 BQ718096 AA515294 CR614862 W15409 BQ417074 AL520149 CR614684 CR626784
highest scoring ESTs for ATF3 :L19871 AA085959 AA099382 AA099461 AA417667 AA420650 AA420689 AA463748 AA490707 AA515294
Unigene Cluster for ATF3: Activating transcription factor 3 Hs.460 [show with all ESTs ] Unigene Representative Sequence: NM_001040619 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for ATF3 (see all 11
) ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3 ^ 4a · 4b · 4c · 4d ^ 5a · 5b ^ 6a · 6b · 6c · 6d ^ 7a · 7b · 7c ^ 8a · 8b SP1 :           -   -           -       -   -   -   -   -       SP2 :             -           -                     SP3 :           -   -           -       -   -             SP4 :                   -     -       -   -             SP5 :                       -       -   -            
About this scheme ECgene alternative splicing isoforms for ATF3 8 Ensembl transcripts including schematic representations : ENST00000366987
ENST00000341491
ENST00000391902
ENST00000366984
ENST00000366983
ENST00000336937
ENST00000366981
ENST00000366985
Expression for ATF3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ATF3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ATF3 1 / 2 / 3
5 probe-sets matching ATF3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAGCTGTTTTSOURCE GeneReport for Unigene cluster: Hs.460 Expression variation in blood from EXPOLDB for ATF3
Orthologs for ATF3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ATF3 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for ATF3 ENSEMBL Gene Tree for ATF3 Paralogs for ATF3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ATF3 gene JDP2 2
SNPs/Variants for ATF3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ATF3 (up to first 250kb)
Disorders & Mutations for ATF3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 603148 10/21 Novoseek disease relationships for ATF3 gene (see all 21
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
hypospadias
53.80
30
18804813 (9), 18426833 (6), 16306208 (4), 18001166 (3) (see all 5 )
adenovirus infections
31.38
1
16860366 (1)
tumors
28.95
29
18808719 (3), 17178897 (3), 15674352 (2), 17952119 (2) (see all 13 )
colon cancer
18.65
6
10965025 (3), 11341467 (1), 11589305 (1), 19063862 (1)
cancer
14.78
17
17952119 (3), 19136462 (3), 16628010 (2), 16847457 (1) (see all 6 )
inflammation
13.57
5
18794337 (2), 12161427 (1), 19155971 (1), 18315734 (1)
colorectal cancer
13.53
8
17964072 (2), 16489044 (2), 15897233 (1), 15670751 (1) (see all 6 )
leukemia t-cell
13.09
1
8007991 (1)
prostate cancer
12.62
19
18755691 (4), 16516039 (4), 17178897 (4), 18998462 (1)
breast cancer
8.72
1
9927194 (1)
About this table Human Genome Epidemiology Navigator: ATF3 (1 document)
Medical News for ATF3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ATF3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/188 PubMed articles for ATF3 gene (see all 188
): ATF3 and ATF3 delta Zip. Transcriptional repression versus activation by alternatively spliced isoforms. (PubMed id 7515060) 1, 2, 3, 4 Chen B.P.C.... Hai T. (1994) An unappreciated role for RNA surveillance. (PubMed id 14759258) 3, 4 Hillman R.T.... Brenner S.E. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Transcription factor ATF cDNA clones: an extensive family of leucine zipper proteins able to selectively form DNA-binding heterodimers. (PubMed id 2516827) 3, 4 Hai T.... Green M.R. (1989) Transcriptional regulation of activating transcription factor 3 involves the early growth response-1 gene. (PubMed id 16079301) 1, 3 Bottone F.G....Eling T.E. (2005) The regulation of ATF3 gene expression by mitogen-activated protein kinases. (PubMed id 17014422) 1, 3 Lu D....Hai T. (2007) Coxsackievirus B3 modulates cell death by downregulating activating transcription factor 3 in HeLa cells. (PubMed id 17599613) 1, 3 Hwang H.Y....Park S.I. (2007) ATF3 induction following DNA damage is regulated by distinct signaling pathways and over-expression of ATF3 protein suppresses cells growth. (PubMed id 12386811) 1, 3 Fan F....Zhan Q. (2002) Estradiol upregulates activating transcription factor 3, a candidate gene in the etiology of hypospadias. (PubMed id 18001166) 1, 3 Liu B....Baskin L.S. (2007) Activation of the ATF3 gene through a co-ordinated amino acid-sensing response programme that controls transcriptional regulation of responsive genes following amino acid limitation. (PubMed id 16989641) 1, 3 Pan Y.X....Kilberg M.S. (2007)
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Genome Databases showing ATF3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ATF3
(According to HUGE )
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Specialized Databases showing ATF3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ATF3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ATF3:
Recombinant Proteins (ATF3 ) Antibodies (ATF3 )
Search Tocris compounds for ATF3
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Aliases for ATF3
Databases for ATF3
Disorders for ATF3
Domains/Families for ATF3
Drugs/Compounds for ATF3
Expression for ATF3
Function for ATF3
Location for ATF3
Medical News for ATF3
Orthologs for ATF3
Paralogs for ATF3
Pathways/Interactions for ATF3
Proteins for ATF3
Publications for ATF3
SNPs for ATF3
Search Box for ATF3
Services for ATF3
Summaries for ATF3
Technologies for ATF3
Transcripts for ATF3
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009