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Aliases for ATE1-AS1 Gene

Subcategory (RNA class) for ATE1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ATE1-AS1 Gene

  • ATE1 Antisense RNA 1 2 3 5
  • ATE1 Antisense RNA 1 (Head To Head) 2

External Ids for ATE1-AS1 Gene

Previous GeneCards Identifiers for ATE1-AS1 Gene

  • GC10P123688

Summaries for ATE1-AS1 Gene

GeneCards Summary for ATE1-AS1 Gene

ATE1-AS1 (ATE1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATE1-AS1 Gene

Genomics for ATE1-AS1 Gene

Regulatory Elements for ATE1-AS1 Gene

Enhancers for ATE1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G121926 1.4 Ensembl ENCODE 56.3 +0.5 493 5.3 HDGF PKNOX1 FOXA2 ARNT WRNIP1 SIN3A DMAP1 ZNF2 YY1 ZNF766 ATE1-AS1 NSMCE4A ATE1 GC10P121933
GH10G121854 1 ENCODE 20.3 -73.3 -73307 1.3 FOXA2 ATF1 MLX ARID4B SIN3A DMAP1 ZNF48 YY1 SLC30A9 ZNF143 ATE1-AS1 ATE1 ENSG00000201884 GC10P121871
GH10G121993 1.2 Ensembl ENCODE dbSUPER 16.7 +66.8 66843 3.3 CTCF PKNOX1 ESRRA RBBP5 RAD21 CTBP1 GATA3 MAZ ZNF687 HLF ATE1-AS1 NSMCE4A TACC2 PIR33240
GH10G122012 1.1 ENCODE dbSUPER 14.2 +85.1 85092 1.5 FOXA2 BMI1 ZNF48 RAD21 YY1 ETV6 RELB CREM IKZF2 CBFB ATE1-AS1 NSMCE4A PIR33240 TACC2
GH10G121935 0.9 ENCODE 17 +7.7 7725 1.6 HNRNPUL1 FOXA2 ARID4B DMAP1 ZNF48 YY1 ZNF121 PPARG KAT8 RCOR2 ATE1-AS1 ATE1 GC10P121933 GC10M121942
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ATE1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ATE1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000034486 -512 2401 HDGF ARNT WRNIP1 SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF207 ZNF143

Genomic Location for ATE1-AS1 Gene

Chromosome:
10
Start:
121,928,312 bp from pter
End:
121,951,965 bp from pter
Size:
23,654 bases
Orientation:
Plus strand

Genomic View for ATE1-AS1 Gene

Genes around ATE1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATE1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATE1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATE1-AS1 Gene

Proteins for ATE1-AS1 Gene

Post-translational modifications for ATE1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATE1-AS1 Gene

Domains & Families for ATE1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATE1-AS1 Gene

Function for ATE1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATE1-AS1 Gene

Localization for ATE1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ATE1-AS1 Gene

Pathways & Interactions for ATE1-AS1 Gene

SuperPathways for ATE1-AS1 Gene

No Data Available

Interacting Proteins for ATE1-AS1 Gene

Gene Ontology (GO) - Biological Process for ATE1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATE1-AS1 Gene

Drugs & Compounds for ATE1-AS1 Gene

No Compound Related Data Available

Transcripts for ATE1-AS1 Gene

mRNA/cDNA for ATE1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATE1-AS1 Gene

No ASD Table

Relevant External Links for ATE1-AS1 Gene

GeneLoc Exon Structure for
ATE1-AS1
ECgene alternative splicing isoforms for
ATE1-AS1

Expression for ATE1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATE1-AS1 Gene

genes like me logo Genes that share expression patterns with ATE1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATE1-AS1 Gene

Orthologs for ATE1-AS1 Gene

Evolution for ATE1-AS1 Gene

ENSEMBL:
Gene Tree for ATE1-AS1 (if available)
TreeFam:
Gene Tree for ATE1-AS1 (if available)

No data available for Orthologs for ATE1-AS1 Gene

Paralogs for ATE1-AS1 Gene

No data available for Paralogs for ATE1-AS1 Gene

Variants for ATE1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATE1-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000000811 -- 121,939,576(+) AAAAA(A/G)AAAAA intron-variant
rs1000366794 -- 121,928,273(+) TGCGA(-/GCCT)GCCCT intron-variant, upstream-variant-2KB
rs1000423617 -- 121,952,454(+) TTCGG(G/T)GACTC downstream-variant-500B
rs1000592235 -- 121,929,616(+) CAGAG(A/G)TCGCG intron-variant, upstream-variant-2KB
rs1000667498 -- 121,941,859(+) AGCAG(C/T)TGAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ATE1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3814 CNV loss 18987735

Relevant External Links for ATE1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATE1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATE1-AS1 Gene

Disorders for ATE1-AS1 Gene

Relevant External Links for ATE1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ATE1-AS1

No disorders were found for ATE1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATE1-AS1 Gene

Publications for ATE1-AS1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 64

Products for ATE1-AS1 Gene

Sources for ATE1-AS1 Gene

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