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Aliases for ASTN2-AS1 Gene

Subcategory (RNA class) for ASTN2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ASTN2-AS1 Gene

  • ASTN2 Antisense RNA 1 2 3 5

External Ids for ASTN2-AS1 Gene

Summaries for ASTN2-AS1 Gene

GeneCards Summary for ASTN2-AS1 Gene

ASTN2-AS1 (ASTN2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ASTN2-AS1 Gene

Genomics for ASTN2-AS1 Gene

Regulatory Elements for ASTN2-AS1 Gene

Enhancers for ASTN2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G116546 1.8 FANTOM5 Ensembl ENCODE dbSUPER 20.6 +44.7 44716 5.3 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 TCF12 FOS MIER2 ASTN2-AS1 ASTN2 ENSG00000230894
GH09G116566 1.2 FANTOM5 ENCODE 20.9 +62.8 62774 2.0 ELF3 HNRNPUL1 TBP FOXA2 SIN3A ZNF48 RAD21 RARA YY1 ZNF207 ASTN2-AS1 ENSG00000230894
GH09G116686 1.6 FANTOM5 Ensembl ENCODE 14.1 +184.2 184231 4.6 PKNOX1 ATF1 CREB3L1 ZFP64 WRNIP1 SIN3A DMAP1 YY1 GLIS2 ZNF207 ASTN2-AS1 ASTN2 PAPPA TRIM32 GC09P116705
GH09G116572 1.1 Ensembl ENCODE 20.2 +68.2 68164 0.9 ELF3 HDGF RB1 SIN3A ZNF48 RAD21 ZNF143 CREM THAP11 ZNF654 ASTN2-AS1 ENSG00000230894 LOC105376240
GH09G116574 0.9 ENCODE 20.2 +70.3 70298 0.4 FOXA2 ATF1 MLX ARID4B ZBTB40 RAD21 RARA GATA4 HMG20B SP5 ASTN2-AS1 ENSG00000230894 LOC105376240
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ASTN2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ASTN2-AS1 Gene

Chromosome:
9
Start:
116,504,283 bp from pter
End:
116,562,293 bp from pter
Size:
58,011 bases
Orientation:
Plus strand

Genomic View for ASTN2-AS1 Gene

Genes around ASTN2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ASTN2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ASTN2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ASTN2-AS1 Gene

Proteins for ASTN2-AS1 Gene

Post-translational modifications for ASTN2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ASTN2-AS1 Gene

Domains & Families for ASTN2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ASTN2-AS1 Gene

Function for ASTN2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ASTN2-AS1 Gene

Localization for ASTN2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ASTN2-AS1 Gene

Pathways & Interactions for ASTN2-AS1 Gene

SuperPathways for ASTN2-AS1 Gene

No Data Available

Interacting Proteins for ASTN2-AS1 Gene

Gene Ontology (GO) - Biological Process for ASTN2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ASTN2-AS1 Gene

Drugs & Compounds for ASTN2-AS1 Gene

No Compound Related Data Available

Transcripts for ASTN2-AS1 Gene

mRNA/cDNA for ASTN2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ASTN2-AS1 Gene

No ASD Table

Relevant External Links for ASTN2-AS1 Gene

GeneLoc Exon Structure for
ASTN2-AS1
ECgene alternative splicing isoforms for
ASTN2-AS1

Expression for ASTN2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ASTN2-AS1 Gene

genes like me logo Genes that share expression patterns with ASTN2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ASTN2-AS1 Gene

Orthologs for ASTN2-AS1 Gene

Evolution for ASTN2-AS1 Gene

ENSEMBL:
Gene Tree for ASTN2-AS1 (if available)
TreeFam:
Gene Tree for ASTN2-AS1 (if available)

No data available for Orthologs for ASTN2-AS1 Gene

Paralogs for ASTN2-AS1 Gene

No data available for Paralogs for ASTN2-AS1 Gene

Variants for ASTN2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ASTN2-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000012959 -- 116,512,616(+) CTCTC(A/G)CTATT intron-variant
rs1000052718 -- 116,509,532(+) AATGG(G/T)ATGGC intron-variant
rs1000069596 -- 116,514,395(+) GTGAG(A/G)TGTCA intron-variant
rs1000118492 -- 116,505,862(+) TCAGT(A/C)TGGAG intron-variant
rs1000132781 -- 116,561,433(+) TACCA(G/T)TTATC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ASTN2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv7707n100 CNV gain 25217958
esv2761554 CNV loss 21179565
esv3545371 CNV deletion 23714750
esv3573372 CNV loss 25503493
esv3891719 CNV loss 25118596
nsv1044135 CNV loss 25217958
nsv615254 CNV loss 21841781
nsv7434 OTHER inversion 18451855
nsv831701 CNV gain 17160897

Relevant External Links for ASTN2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ASTN2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ASTN2-AS1 Gene

Disorders for ASTN2-AS1 Gene

Relevant External Links for ASTN2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ASTN2-AS1

No disorders were found for ASTN2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ASTN2-AS1 Gene

Publications for ASTN2-AS1 Gene

  1. Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. (PMID: 23284291) Hancock D.B. … London S.J. (PLoS Genet. 2012) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for ASTN2-AS1 Gene

Sources for ASTN2-AS1 Gene

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